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1 of conserved nucleobases in ribonuclease P (RNase P).
2 ty that is hidden in cellular substrates for RNase P.
3 iple proteins, most of which are shared with RNase P.
4 ion and cleavage of a tRNA-like structure by RNase P.
5 bserved in cells deficient for mitochondrial RNase P.
6 observed with partially purified native Mma RNase P.
7 d a discussion of some research prospects on RNase P.
8 uggest a universal mechanism of catalysis by RNase P.
9 inity Mg(II) activates cleavage catalyzed by RNase P.
10 the environment of an essential metal ion in RNase P.
11 orresponding to G378 and G379 in B. subtilis RNase P.
12 l model for finding other potential roles of RNase P.
13 served and essential for tRNA recognition by RNase P.
14 that contributes to molecular recognition of RNase P.
15 ocessing of mitochondrial precursor tRNAs by RNase P.
16 cleolytic processing was solely dependent on RNase P.
17 RNAs that subsequently become substrates for RNase P.
18 in subunit shared by archaeal and eukaryotic RNase P.
19 iating the role of multiple Rpps in archaeal RNase P.
20 Rpp29 is a protein subunit of RNase P.
21 plex and larger endogenous ribonucleoprotein RNase P.
22 overy of antibacterial compounds that target RNase P.
23 fied as a new inhibitor of Bacillus subtilis RNase P.
24 stinguishes them from bacterial and archaeal RNases P.
27 NA and recruit intracellular ribonuclease P (RNase P), a tRNA processing enzyme, to degrade target mR
28 ns, we now add L7Ae as a subunit of archaeal RNase P, a ribonucleoprotein (RNP) that catalyzes 5'-mat
29 lso been identified as a subunit of archaeal RNase P, a ribonucleoprotein complex that employs an RNA
33 cular composition, the RNA and protein-based RNase P act as dynamic scaffolds for the binding and pos
34 ure of how metals coordinate to the putative RNase P active site in solution, and shed light on the e
36 of RNase P, we developed the first real-time RNase P activity assay using fluorescence polarization/a
38 The large stimulatory effect of Mma L7Ae on RNase P activity decreases to <or= 4% of wild type upon
39 h a chimeric RNase P as their sole source of RNase P activity exhibit extremely variable responses.
41 rotein subunits are associated with archaeal RNase P activity in vivo: RPP21, RPP29, RPP30, and POP5.
45 a and most Bacteria also encode an RNA-based RNase P; activity of both RNase P forms from the same ba
49 l component of mitochondrial Ribonuclease P (RNase P), an enzyme required for mitochondrial tRNA proc
50 We investigated Pyrococcus furiosus (Pfu) RNase P, an archaeal RNP that catalyzes tRNA 5' maturati
52 RNA substrates including tRNA precursors for RNase P and 5.8 S rRNA precursors, as well as some mRNAs
53 (snoRNAs), because these both copurify with RNase P and accumulate larger forms in the RNase P tempe
55 atomic-level information on the mechanism of RNase P and continue to expand our understanding of the
57 mmon RNA-mediated catalytic mechanism in all RNase P and help uncover parallels in RNase P catalysis
58 nces of pre-tRNAs may be common in bacterial RNase P and may lead to species-specific substrate recog
61 and image processing we show that eukaryotic RNase P and RNase MRP have a modular architecture, where
63 Pop6, and Pop7 proteins, known components of RNase P and RNase MRP, bind to yeast telomerase RNA and
64 lso the sites of greatest difference between RNase P and RNase MRP, highlighting the importance of th
65 maintenance of the MRPP1-HSD10 subcomplex of RNase P and that loss of HSD10 causes impaired mitochond
68 bles the D- and T-loop binding elements from RNase P and the ribosome exit site, suggesting that this
70 t is closely related to the RNA component of RNase P, and multiple proteins, most of which are shared
72 s for Bacillus subtilis and Escherichia coli RNase P are enhanced by sequence-specific contacts betwe
73 suggesting that rates of ptRNA processing by RNase P are tuned for uniform specificity and consequent
74 proK and proM transcripts, while PNPase and RNase P are utilized in the processing of proL The termi
76 coli cells forced to survive with a chimeric RNase P as their sole source of RNase P activity exhibit
77 In this study, we constructed a functional RNase P-based ribozyme (M1GS RNA) that targets the overl
78 owed that Salmonella can efficiently deliver RNase P-based ribozyme sequence in specific human cells,
80 entarity with a target RNA and the action of RNase P, but also to a non-gene-specific tight binding o
81 makes the latter a substrate for endogenous RNase P by rendering the bipartite target RNA-EGS comple
82 in all RNase P and help uncover parallels in RNase P catalysis hidden by plurality in its subunit mak
84 nctional group modifications of U51 decrease RNase P-catalyzed phosphodiester bond cleavage 16- to 23
88 ata are the first evidence that defective mt:RNase P causes mitochondrial dysfunction, lethality and
90 l be discussed using a model where bacterial RNase P cleavage proceeds through a conformational-assis
91 at the site immediately 5' of the canonical RNase P cleavage site, the -1 position, to study Escheri
92 ch mature 5' terminus is generated by single RNase P cleavage, while the 3' terminus undergoes exonuc
100 PP30), we show that addition of L7Ae to this RNase P complex increases the optimal reaction temperatu
102 3, form the mitochondrial ribonuclease P (mt-RNase P) complex that cleaves the 5' ends of mt-tRNAs fr
110 cRNAs NEAT1, MALAT1, and RPPH1, composing an RNAse P-dependent lncRNA-maturation pathway, were also u
111 m the H1 RNA, the RNA component of the human RNase P enzyme, appended to a nonimported RNA directs th
112 functional RNP intermediates en route to the RNase P enzyme, but provided no information on subunit s
114 NA complex that illustrates how protein-only RNase P enzymes specifically bind tRNA and highlights th
116 jugates as selective inhibitors of bacterial RNase P, especially once the structural differences in R
118 ncode an RNA-based RNase P; activity of both RNase P forms from the same bacterium or archaeon could
121 specially once the structural differences in RNase P from the three domains of life have been establi
125 primers and a probe that targeted the human RNase P gene to assess the presence of PCR inhibitors an
126 fs of the hemotropic Mycoplasma 16S rRNA and RNase P genes indicate the presence of a novel organism.
129 few individual model substrates of bacterial RNase P have been well described, the competitive substr
130 irm that the protein- and RNA-based forms of RNase P have distinct modules for substrate recognition
131 y, where ribozymes, such as the ribosome and RNase P, have evolved into protein-dependent RNA catalys
137 subunits, we have reconstituted in vitro the RNase P holoenzyme from the thermophilic archaeon Pyroco
140 eal (an experimental surrogate for eukaryal) RNase P holoenzyme lends promise to the design of aminog
142 the bacterial RNA component, and a bacterial RNase P holoenzyme/tRNA complex provide insights into th
143 fferent mesophilic and thermophilic archaeal RNase P holoenzymes, reconstituted in vitro using their
145 e identified an unknown type of protein-only RNase P in the hyperthermophilic bacterium Aquifex aeoli
147 ow that targeted destruction of HeLa nuclear RNase P inhibits transcription of 5S rRNA genes in whole
153 nal behavior of cells harboring the chimeric RNAse P is also perturbed, affecting the levels of at le
158 the endoribonucleolytic activity per se, of RNase P is critical for the function of Pol III in cells
159 ntify RNAs that do not change abundance when RNase P is depleted but accumulate as larger precursors,
171 random EGSs, the particular target RNA, and RNase P is used in the diagnostic procedure, which, afte
180 te nucleus, the endonuclease ribonuclease P (RNase P) is composed of a catalytic RNA that is assisted
182 The mitochondrial form of ribonuclease P (mt:RNase P) is responsible for 5'-end maturation and is com
185 bstrate recognition while assisting archaeal RNase P-mediated cleavage of a target RNA in vitro.
188 orted here will further our understanding of RNase P molecular recognition and facilitate discovery o
189 e further evidence of a conserved eukaryotic RNase P/MRP architecture and provide a strong basis for
190 ents universally found in all enzymes of the RNase P/MRP family, as well as with a phylogenetically c
192 myces cerevisiae RNase MRP in a complex with RNase P/MRP proteins Pop6 and Pop7 solved to 2.7 A.
193 s with existing data for the yeast and human RNase P/MRP systems enables confident identification of
195 ctural organization of the P3 RNA domains in RNases P/MRP and possible functions of the P3 domains an
198 d the three proteins composing Drosophila mt:RNase P: Mulder (PRORP), Scully (MRPP2) and Roswell (MRP
199 the ribonucleoprotein enzyme ribonuclease P (RNase P (P RNA) contains the active site, but binding of
200 ularly significant is the mechanism by which RNase P processes the valU and lysT polycistronic transc
203 ndependent transcription terminator inhibits RNase P processing of both transcripts leading to a decr
204 uctural and biophysical studies of bacterial RNase P propose direct coordination of metal ions by the
206 larly, the recently discovered proteinaceous RNase P (PRORP) possesses two domains - pentatricopeptid
208 tter form of the enzyme, called protein-only RNase P (PRORP), is widespread in eukaryotes in which it
211 active site, but binding of Escherichia coli RNase P protein (C5) to P RNA increases the rate constan
212 s comprised of three proteins; mitochondrial RNase P protein (MRPP) 1 and 2 together with proteinaceo
215 d of one catalytic RNase P RNA (RPR) and one RNase P protein (RPP), have helped understand the pleiot
216 tions in TRMT10C (encoding the mitochondrial RNase P protein 1 [MRPP1]) in two unrelated individuals
217 of pyrophosphate (PPi) to Bacillus subtilis RNase P protein as a model, we show that coupled reactio
218 est that an important biological function of RNase P protein is to offset differences in pre-tRNA str
220 ic RNase P RNA (RPR) and a varying number of RNase P proteins (RPPs): 1 in bacteria, at least 4 in ar
221 esent the most conserved region of bacterial RNase P proteins, exhibit negligible changes in catalyti
224 ntriguing possibility is that replacement of RNase P ribonucleoprotein particles (RNPs) by proteins m
227 lity of Salmonella-mediated oral delivery of RNase P ribozyme for gene-targeting applications in vivo
228 specificity domain of the Bacillus subtilis RNase P ribozyme undergoes a rate-limiting folding step
229 develop Salmonella-mediated gene transfer of RNase P ribozymes as an effective approach for gene-targ
230 n in animals and demonstrates the utility of RNase P ribozymes for gene targeting applications in viv
231 y, validate and analyze the genes coding for RNase P RNA (P RNA) from all published metagenomic proje
232 In particular, the precursor containing both RNase P RNA (RPM1) and tRNA(Pro) accumulated dramaticall
233 -maturation, typically comprises a catalytic RNase P RNA (RPR) and a varying number of RNase P protei
234 terial holoenzyme, composed of one catalytic RNase P RNA (RPR) and one RNase P protein (RPP), have he
235 The bacterial RNase P protein (RPP) aids RNase P RNA (RPR) catalysis by promoting substrate bindi
236 n all domains of life, it is a ribozyme: the RNase P RNA (RPR) component has been demonstrated to be
240 ic and structural gap that separates the two RNase P RNA classes, previous work suggested their inter
241 both types of experiments indicate that the RNase P RNA folds similarly in 1 M Na(+) and 10 mM Mg(2+
242 energy landscape of the catalytic domain of RNase P RNA from Bacillus stearothermophilus (C(thermo))
244 Li and Altman computationally identified the RNase P RNA gene in all but three sequenced microbes: Na
245 identified a radically minimized form of the RNase P RNA in five Pyrobaculum species and the related
247 y domain (S-domain) of the Bacillus subtilis RNase P RNA is more extended than its native structure.
248 roduct of the FAS II pathway is required for RNase P RNA maturation, which positively affects RNase P
249 were used to probe the binding sites on the RNase P RNA specificity domain of Bacillus subtilis.
251 of the B. subtilis and the Escherichia coli RNase P RNA that belong to different classes of P RNA an
253 acing the endogenous Type-A Escherichia coli RNase P RNA with a Type-B homolog derived from Bacillus
254 served noncoding RNAs from Escherichia coli, RNase P RNA, signal-recognition particle RNA, and tmRNA
257 aeal L7Ae in RNPs acting in tRNA processing (RNase P), RNA modification (H/ACA, C/D snoRNPs), and tra
263 The protein component of yeast mitochondrial RNase P, Rpm2, is not modified by lipoic acid in the wil
266 esults support and extend current models for RNase P substrate recognition in which contacts involvin
269 9 modestly decrease the cleavage activity of RNase P, suggesting outer-sphere coordination of O6 on G
271 arable to their IC50 value for inhibition of RNase P, suggesting that binding of these antibiotics to
273 RNA subunit of a ubiquitous endoribonuclease RNase P that consists of one RNA subunit and one or more
274 5), one of four protein subunits of archaeal RNase P that shares a homolog in the eukaryotic enzyme.
276 highly conserved P4 helix of ribonuclease P (RNase P), the ribonucleoprotein that catalyzes the dival
277 ciding with the publication of a treatise on RNase P, this review provides a historical narrative, a
278 loss of the universal and supposedly ancient RNase P through genomic rearrangement at tRNA genes unde
280 mately 25-fold more active in inducing human RNase P to cleave the mRNA in vitro than the EGS derived
283 our kinetic and footprinting studies on Pfu RNase P, together with insights from recent structures o
285 The active site structure and conserved RNase P-tRNA contacts suggest a universal mechanism of c
290 substrates compete for processing by E. coli RNase P, we compared the steady state reaction kinetics
291 ction studies and discovery of inhibitors of RNase P, we developed the first real-time RNase P activi
292 tent than neomycin B in inhibiting bacterial RNase P, we synthesized hexa-guanidinium and -lysyl conj
293 stand the assembly and catalysis of archaeal RNase P, we used a site-specific hydroxyl radical-mediat
294 of structure variation at sites contacted by RNase P, were determined by internal competition in reac
297 ns that aid an RNA catalyst, we use archaeal RNase P, which comprises one catalytic RPR and at least
298 onuclease MRP is an endonuclease, related to RNase P, which functions in eukaryotic pre-rRNA processi
299 ise, Mg(2+)-dependent reconstitutions of Pfu RNase P with its catalytic RNA subunit and two interacti
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