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1 SSR analysis allowed the detection of 157 alleles across
2 SSR dose-related suppression of the nickel CHS response
3 SSR growth requires Ral and the exocyst component Sec5 a
4 SSR had the same effect as cis-UCA, but trans-UCA had no
5 SSR loci also exhibit the highest percentage of 'extende
6 SSR loci are least conserved with 12.71 polymorphic base
7 SSR markers and Real Time qPCR analysis showed that diff
8 SSR processes provide a new alternative to understand th
9 SSR-based cluster analysis revealed that varieties with
10 SSRs (simple sequence repeats) have been shown to have a
11 SSRs are subject to slipped-strand mutations and a commo
12 SSRs can affect neuronal differentiation, brain developm
13 SSRs, on the other hand, are found at low frequency dist
16 agronomic traits relative to 26 RFLP and 15 SSR chromosome 3A-specific markers on 95 single-chromoso
20 agonists such as nicotine, choline, GTS-21, SSR-180711A and PNU-282987 in the presence of the positi
21 enerated in this study was screened using 22 SSR markers located on linkage group 2 which contains a
24 rent study, we simultaneously genotyped 3105 SSRs in eight rice varieties, which were further validat
25 ingerprints of the rice varieties using 3105 SSRs, which offer much greater discriminative power than
26 s in variation of amino acid repeats, and 4) SSRs are stable molecular markers for genetic studies in
28 constructed using 2,467 SLAF markers and 43 SSRs, which were distributed on seven linkage groups spa
31 WI [CNN(WI3A)], with 142 RFLP probes and 55 SSR markers revealed that the extent of polymorphism is
36 ntial have been reported, we now show that a SSR also impacts small RNA-mediated posttranscriptional
37 haracterized the distribution of 19 abundant SSR types (AST), which account for 71% of total SSRs in
38 netics and forensics, which require accurate SSRs to calculate intra- and inter-species interactions.
39 tinic acetylcholine receptor (nAChR) agonist SSR 180711 (3.0 mg/kg) eliminated the TTX-induced perfor
43 l method for SSR genotyping, named as AmpSeq-SSR, which combines multiplexing polymerase chain reacti
44 results showed that the accuracies of AmpSeq-SSR were nearly 100 and 94% with a single base resolutio
46 the work we present focused on rice, AmpSeq-SSR can be readily extended to animals and micro-organis
48 he method and a case study with 201 AFLP and SSR markers scored on 228 full-sib individuals of autote
49 sing a full-sib population of 238 plants and SSR and STS markers to access the degree of preferential
50 f SNPs (single nucleotide polymorphisms) and SSR (simple sequence repeat) variation as a means of tra
51 h that combines Phenotype MicroArray(TM) and SSR genotyping appeared useful to assess the performance
52 The genes up-regulated by both cis-UCA and SSR were associated with apoptosis, cell growth arrest,
53 pid peroxidation were induced by cis-UCA and SSR, but not trans-UCA, suggesting possible upstream eve
55 suggest a diverse array of interspersed and SSRs in the common ancestor of amniotes and a genomic co
61 This study identified highly polymorphic BES-SSRs containing tri- to hexanucleotides motifs and bring
62 cally between chromosomes as well as between SSR types, 2) the size variation of tri-nt SSRs in exons
63 atistically significant associations between SSRs and gene functional classifications were detected,
64 fic SNP genotyping primers, and Brachypodium SSR flanking primers in several genome projects have bee
65 hereditary neurodegenerative disorders, but SSR alleles can also contribute to normal variation in b
67 thousands of transgenic insertions carrying SSR recognition sites have been distributed throughout t
69 of tri-nucleotide (nt) SSRs, the most common SSRs in N. crassa, was significantly biased in exons.
73 rocess that generalises the recently defined SSR processes and is able to produce power laws with arb
74 high-throughput software tool for designing SSR flanking primers and SNP genotyping primers is incre
79 tology (GO) terms with abundance of (AG)3-Di-SSRs shared by the VP strains were associated with purin
80 he numbers of triplexes formed from (AG)n-Di-SSRs between VP and N_VP in Mycoplasma suggested the pot
83 of (AG)n dimeric simple sequence repeats (Di-SSRs) in the genomes, coding and non-coding regions than
84 d Syndapin colocalize with Past1 in distinct SSR subdomains and collapse into Amphiphysin-dependent m
85 ast, the sheep isolates representing diverse SSR genotypes closely resembled the global gene expressi
86 number of different bands detected for each SSR primer pair using a LI-COR- DNA Analyzer ranged from
87 and polymorphism information content of each SSR locus was calculated with an adapted formula taking
88 ng fruiting body development and develop EST-SSR markers assessing the genetic value of breeding mate
89 developed 26 polymorphic and informative EST-SSR markers to assess the genetic diversity in 82 strain
90 variation (no more than two variants per EST-SSR genotype) and recently published chromosomal evidenc
91 sed-sequence tag simple-sequence repeat (EST-SSR)) primers to survey genetic variation in populations
92 at is known about the transferability of EST-SSRs from one taxon to another with particular reference
93 cuss the advantages and disadvantages of EST-SSRs in the context of population genetic applications.
97 steomyelitis and cystic fibrosis carry fewer SSRs than do isolates from patients with acute infection
100 etic marker, we developed a novel method for SSR genotyping, named as AmpSeq-SSR, which combines mult
103 lated, positively for TEs and negatively for SSRs, with relative nucleosome binding affinities along
117 l homozygosity underlying fixed heterozygote SSR genotypes, which in turn reflect a selfing mating sy
118 ch finds all SSRs faster than most heuristic SSR identification algorithms in a parallelized, easy-to
119 We discuss several applications showing how SSR processes can be used to understand Zipf's law in wo
120 tions, accurately and intuitively identifies SSRs quickly and in a more user-friendly manner than any
122 we show that imposing energy conservation in SSR cascades allows us to recover Fermi's classic result
127 eta11 (imp-beta11) and dfz2 mutants had less SSR, and some boutons lacked the postsynaptic marker Dis
130 erally rare in prokaryotic genomes, and long SSRs composed of iterations of mono-, di-, tri-, and tet
131 results concerning associations between long SSRs and genes related to different cellular functions i
132 ons were detected, suggesting that most long SSRs are not related to a particular cellular function o
136 th greater effect than the RE leads to lower SSR using the CE regardless of the AE proportion and the
137 or their placement with independently mapped SSRs, demonstrating the previously un-utilized power tha
139 genotypes and an established microsatellite (SSR) framework map, we produced a high-density genetic m
140 to genotype potentially more than a million SSRs at once using the current sequencing techniques.
141 SSR is 100% accurate and detected >1000 more SSRs than the second best algorithm, while offering grea
143 sporter 1 (GlyT1) inhibitors including NFPS, SSR 504734, Lu AA21279, Org 25935, SB-710622, GSK931145,
145 n SSR types, 2) the size variation of tri-nt SSRs in exons might be an important mechanism in generat
146 The distribution of tri-nucleotide (nt) SSRs, the most common SSRs in N. crassa, was significant
147 her Populus linkage studies, and addition of SSR loci from the poplar genome project provided coarse
153 to account for miR-8-mediated regulation of SSR architecture, consistent with its localization in th
154 ective of this study was to develop a set of SSR markers useful for genetic studies in sainfoin and t
157 ecific genes in human and mouse, in terms of SSR types and distributions in different regions includi
158 ence repeats (SSRs) constitutes the basis of SSRs as an effective genetic marker with various applica
159 d 2,000 were suitable for the development of SSRs, of which 194 were evaluated in low-resolution scre
161 enic bacteria, we observe over enrichment of SSRs near protein N-termini significantly beyond expecta
165 gnaling in eradication of S. aureus, loss of SSRs may represent an advantageous mechanism to adapt to
167 and immune cells, depending on the number of SSRs, which leads to differences in neutrophil recruitme
168 In order to fully exploit the potential of SSRs as genetic marker, we developed a novel method for
171 d that ESTs are a potentially rich source of SSRs that reveal polymorphisms not only within the sourc
174 We also characterized the size variation of SSRs among natural accessions using Polymorphic Index Co
175 was to adapt a genotyping approach based on SSR (Simple Sequence Repeat) marker to a discriminating
179 were identified, with a distribution of one SSR (simple sequence repeat) per 8.36 kbp and 2,000 were
183 th an average of 4.8 polymorphic markers per SSR across 34 Peronosclerospora, Peronospora and Scleros
184 To identify more biologically pertinent SSRs, we also developed several filters that allow users
186 of primer designs including generic primers, SSR primers together with SSR detection, and SNP genotyp
191 red the effect of solar-simulated radiation (SSR) on the elicitation phase of contact hypersensitivit
192 s were induced by solar-simulated radiation (SSR), 16 of which were also up-regulated by cis-UCA.
193 It was found that surface solar radiation (SSR) decreased considerably with wind stilling in heavil
195 tera venom without systemic sting reactions (SSRs) is commonly observed in the general population.
196 15-crown-5 ether, a selective shift reagent (SSR), was added after the last chromatographic dimension
198 scribe a simple site-specific recombination (SSR) strategy that simultaneously removes pre-defined DN
200 emonstrate that these sample-space-reducing (SSR) processes necessarily lead to Zipf's law in the ran
201 (referred as to single surface referencing (SSR)) uses a single functionalized surface split into th
204 ors, with 50 nuclear simple sequence repeat (SSR) (also known as microsatellite) primer pairs and a p
205 ted QTL, we analyzed simple sequence repeat (SSR) diversity from 102 markers dispersed throughout the
206 n many forest trees (simple sequence repeat (SSR) FST=0.21), with major genetic groups corresponding
207 , regardless of their short sequence repeat (SSR) genotype, induced similar global gene expression pa
208 DNA, genomic DNA and simple sequence repeat (SSR) loci were re-sequenced in Gossypium herbaceum (A1 g
210 andraces assessed by simple sequence repeat (SSR) markers and allelic variation at the GmTfl1 locus s
211 er analysis with 151 simple sequence repeat (SSR) markers in 90 individuals of the population indicat
212 iously characterised Simple Sequence Repeat (SSR) markers to estimate genetic differentiation across
213 639033]), developing simple sequence repeat (SSR) markers, and identifying single nucleotide polymorp
214 ed on a whole-genome simple sequence repeat (SSR)-based genetic map and on mapping sex determination
215 M in the preexisting simple sequence repeat (SSR)-based map, while 111 genes mapped in 19 of the 26 g
217 Microsatellite (simple sequence repeat - SSR) and single nucleotide polymorphism (SNP) markers ar
219 ait loci (QTLs) and simple sequence repeats (SSR) markers linked to three QTLs for PM resistance.
220 orphisms (AFLP) and simple sequence repeats (SSR)] we have generated genetic linkage maps for Physcom
221 stribution of SNPs, simple sequence repeats (SSRs) and isozyme alleles and a graphical view of the pl
226 cient genotyping of simple sequence repeats (SSRs) constitutes the basis of SSRs as an effective gene
231 ion of hypermutable simple sequence repeats (SSRs) is a widespread and stochastic mechanism to genera
232 ct, by carrying out simple sequence repeats (SSRs) markers analysis, we characterise the genetic prof
234 lyzed the multilocus short sequence repeats (SSRs) of 211 and 56 isolates of Mycobacterium avium subs
235 hether the number of short sequence repeats (SSRs) present in the polymorphic region modulates the in
236 n instances such as Simple Sequence Repeats (SSRs), a 'good enough' solution may not accurately portr
237 informative marker simple sequence repeats (SSRs), as long as a sufficient number of loci are employ
240 ymerase slippage of simple sequence repeats (SSRs), to generate phenotypic variation and enhanced fit
243 I) were scanned for Simple Sequence Repeats (SSRs); unique SSRs were then tested for amplification an
246 f the subsynaptic muscle membrane reticulum (SSR) at the Drosophila melanogaster larval neuromuscular
248 ic development of the subsynaptic reticulum (SSR), an elaboration of the postsynaptic plasma membrane
250 d elements (LINEs) and a paucity of A-T rich SSRs, characterize turtles and archosaur genomes, wherea
251 issect the genetics of Sclerotinia stem rot (SSR) [caused by Sclerotinia sclerotiorum (Lib.) de Bary]
253 Here, we present an innovative algorithm, SA-SSR, based on suffix and longest common prefix arrays fo
256 he integrated linkage map with gene-specific SSR markers coupled with computational prediction of AFL
257 One hundred and seventy-nine gene-specific SSR markers were mapped in 46 linkage groups, and 1574 p
262 recting the choice of the most appropriate T-SSR system for genetic engineering include that, wheneve
263 Tyrosine-type site-specific recombinases (T-SSRs) have opened new avenues for the predictable modifi
264 in our mechanistic understanding of simple T-SSRs and their application in developmental and syntheti
266 Taken together, our results suggest that SSRs may have an effect on gene expression and may play
268 the relative overlap, can help to define the SSR in specific situations and it should be considered f
272 the elaboration of increasing layers of the SSR and uncover new roles for an EHD protein at synapses
274 during persistent carriage by analyzing the SSRs of eight loci in multiple isolates from 21 carriers
275 we conclude that 1) the distributions of the SSRs in the sequenced N. crassa genome differ systematic
276 f LSSR(5-11) in some genomes may reflect the SSRs' general tendency to expand rather than their speci
282 types (AST), which account for 71% of total SSRs in the N. crassa genome, using a Poisson log-linear
283 ific genes and CGG, the dominant type of tri-SSR in 5'-UTR, accounts for 74-79% of the tri-SSRs in ho
285 SR in 5'-UTR, accounts for 74-79% of the tri-SSRs in housekeeping genes, as compared to 42-57% in tis
288 g that these species may evolutionarily tune SSR positions in coding regions to facilitate phase vari
289 large genomic segment that lies between two SSR recognition-site insertions can be "captured" as a t
290 d to the distal part of chr.3 flanked by two SSR markers within an interval of 1.8 cM corresponding t
292 d for Simple Sequence Repeats (SSRs); unique SSRs were then tested for amplification and polymorphism
295 icant epistatic interactions associated with SSR resistance, with candidate genes involved in a wide
296 g generic primers, SSR primers together with SSR detection, and SNP genotyping primers (including sin
297 , at least some of the genes associated with SSRs encode potential antigens, which is expected if the
298 ulation might also apply to other genes with SSRs, which could be targeting sites of cis- or trans-en
299 rresponding SR of 93.9%, whereas the 16-year SSR and SR for the R implants were 97.2% and 95.2%, resp
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