ライフサイエンスコーパス: Shewanella oneidensis

1 ases in the versatile respiratory network of Shewanella oneidensis .

2 ied by MS/MS from a different microorganism (Shewanella oneidensis).

3 cherichia coli, Saccharomyces cerevisiae and Shewanella oneidensis.

4 yses of global tryptic digest of the microbe Shewanella oneidensis.

5 ter for Kdo8N biosynthesis was identified in Shewanella oneidensis.

6 cerevisiae and TyrR-LiuR network in bacteria Shewanella oneidensis.

7 for Escherichia coli, Bacillus subtilis, and Shewanella oneidensis.

8 e a molecular pathway for H-NOX signaling in Shewanella oneidensis.

9 e of the mammalian peptide transporters from Shewanella oneidensis.

10 microbes such as Desulfovibrio vulgaris and Shewanella oneidensis.

11 ts were performed in a gamma-proteobacterium Shewanella oneidensis.

12 orces that characterize interactions between Shewanella oneidensis (a dissimilatory metal-reducing ba

13 species-specific function, were monitored in Shewanella oneidensis, a metal reducing bacterium, follo

14 e cloned and expressed the MsrBA enzyme from Shewanella oneidensis, a metal-reducing bacterium and fi

15 Previous claims that Shewanella oneidensis also produce conductive pili have

16 enomic analysis of the cis-regulatory map of Shewanella oneidensis, an important model organism for b

17 uter-membrane deca-heme cytochrome MtrC from Shewanella oneidensis and flavin mononucleotide (FMN in

18 In PIPES buffer at pH 7 with excess H(2), Shewanella oneidensis and Geobacter sulfurreducens both

19 e availability of whole genome sequences for Shewanella oneidensis and Geobacter sulfurreducens has p

20 Microbial (Shewanella oneidensis and Geobacter sulfurreducens) and

21 In contrast, Shewanella oneidensis and Pseudomonas putida have high i

22 the acnD and prpF genes from two organisms, Shewanella oneidensis and Vibrio cholerae, and found tha

23 a global proteome extract from the bacteria Shewanella oneidensis, and mouse plasma, as well as (18)

24 ergy in DNA-protein interactions between the Shewanella oneidensis ArcA two-component transcription f

25 urface power density of 89.4 muW/cm(2) using Shewanella oneidensis as a model biocatalyst without any

26 we applied QENS to study water transport in Shewanella oneidensis at ambient (0.1 MPa) and high (200

27 -host-range plasmid was poorly maintained in Shewanella oneidensis, but rapidly adapted through mutat

28 The facultative anaerobe Shewanella oneidensis can reduce a number of insoluble e

29 genomic expression patterns were examined in Shewanella oneidensis cells exposed to elevated sodium c

30 f energy by Fe(III)-reducing species such as Shewanella oneidensis could potentially control the redo

31 Shewanella oneidensis cytochrome c nitrite reductase (so

32 we show that an H-NOX protein (SO2144) from Shewanella oneidensis directly interacts with the sensor

33 hanococcus jannaschii, Pyro coccus furiosus, Shewanella oneidensis, Escherichia coli and Deinococcus

34 the effect of an insertional mutation in the Shewanella oneidensis etrA (electron transport regulator

35 found in the unannotated genome sequence of Shewanella oneidensis (formerly S. putrefaciens) MR-1.

36 Both standard proteins and a complex Shewanella oneidensis global protein extract were digest

37 ics of the respiratorily versatile bacterium Shewanella oneidensis grown under aerobic, lactate-limit

38 In Shewanella oneidensis, H-NOX-mediated NO sensing increas

39 crystal structures of the H-NOX protein from Shewanella oneidensis in the unligated, intermediate six

40 g bioenergy and bioremediation applications, Shewanella oneidensis, in minimal and rich media.

41 estris TDO and a related protein SO4414 from Shewanella oneidensis, including the structure at 1.6-A

42 Fe(II)-NO complex of the H-NOX protein from Shewanella oneidensis inhibits the autophosphorylation o

43 Shewanella oneidensis interacts with electrodes primaril

44 ulation of sigma(S) in the aquatic bacterium Shewanella oneidensis involves the CrsR-CrsA partner-swi

45 Shewanella oneidensis is a metal reducer that can use se

46 Shewanella oneidensis is a metal reducer that uses the c

47 Shewanella oneidensis is an important model organism for

48 Shewanella oneidensis is an important model organism for

49 Shewanella oneidensis is known for its ability to respir

50 Shewanella oneidensis is used as a model organism.

51 of the Fe(III)-reducing facultative anaerobe Shewanella oneidensis manipulated under controlled labor

52 alysis of the HexR regulatory network in the Shewanella oneidensis model system.

53 fied a conserved chromosomal gene cluster in Shewanella oneidensis MR-1 (locus tag: SO_1522-SO_1518)

54 nt chromium (Cr(VI)) were investigated using Shewanella oneidensis MR-1 (MR-1) as a biocatalyst and p

55 ional analysis of the cold shock response of Shewanella oneidensis MR-1 after a temperature downshift

56 PCR primers specific to individual ORFs from Shewanella oneidensis MR-1 and Deinococcus radiodurans R

57 physical barrier, the Gram-negative bacteria Shewanella oneidensis MR-1 and Geobacter sulfurreducens

58 AuNP samples was evaluated for the bacterium Shewanella oneidensis MR-1 and is quantitatively correla

59 mical techniques to probe intact biofilms of Shewanella oneidensis MR-1 and Shewanella sp. MR-4 grown

60 mutagenesis in the metal-reducing bacterium Shewanella oneidensis MR-1 and the pathogenic yeast Cand

61 the presence of the iron reducing bacterium Shewanella oneidensis MR-1 are investigated under contro

62 metabolic responses of metabolically active Shewanella oneidensis MR-1 biofilms to U(VI) (uranyl, UO

63 We found that in 12-hour-old Shewanella oneidensis MR-1 biofilms, a reduction in cell

64 ed that detachment of cells from biofilms of Shewanella oneidensis MR-1 can be induced by arresting t

65 In this paper, population-level taxis of Shewanella oneidensis MR-1 cells in the presence of a ra

66 enous method to increase power output from a Shewanella oneidensis MR-1 containing MFC by adding calc

67 kout collection of the electroactive microbe Shewanella oneidensis MR-1 containing representatives fo

68 Shewanella oneidensis MR-1 contains a gene encoding a pu

69 Shewanella oneidensis MR-1 exhibits diverse metal ion-re

70 Shewanella oneidensis MR-1 expresses two distinct types

71 echniques to investigate binding between the Shewanella oneidensis MR-1 extracellular electron transf

72 Anaerobic cultures of Shewanella oneidensis MR-1 grown with nitrate as the sol

73 lability of the complete genome sequence for Shewanella oneidensis MR-1 has permitted a comprehensive

74 The tetraheme c-type cytochrome, CymA, from Shewanella oneidensis MR-1 has previously been shown to

75 The decaheme cytochrome MtrC from Shewanella oneidensis MR-1 immobilized on an ITO electro

76 lectron transport chain of the DIR bacterium Shewanella oneidensis MR-1 in Escherichia coli, we showe

77 ure of the small tetraheme cytochrome c from Shewanella oneidensis MR-1 in two crystal forms and two

78 the extracellular electron transfer chain of Shewanella oneidensis MR-1 into the model microbe Escher

79 Shewanella oneidensis MR-1 is a facultative Fe(III)- and

80 Shewanella oneidensis MR-1 is a facultatively anaerobic

81 We previously reported that Shewanella oneidensis MR-1 is highly sensitive to UVC (2

82 (IR) dose that yields 20% survival (D20) of Shewanella oneidensis MR-1 is lower by factors of 20 and

83 Shewanella oneidensis MR-1 is purported to express outer

84 t the dissimilatory metal-reducing bacterium Shewanella oneidensis MR-1 lacks chemotactic responses t

85 Expression from the Shewanella oneidensis MR-1 nnrS gene promoter, cloned in

86 Shewanella oneidensis MR-1 possesses two different stato

87 Shewanella oneidensis MR-1 produced electrically conduct

88 determined that graphene oxide reduction by Shewanella oneidensis MR-1 requires the Mtr respiratory

89 Shewanella oneidensis MR-1 sequentially utilizes lactate

90 whole-genome analyses of DNA methylation in Shewanella oneidensis MR-1 to examine its possible role

91 The molecular response of Shewanella oneidensis MR-1 to variations in extracellula

92 iron) and the common metal-reducing microbe Shewanella oneidensis MR-1 under several endmember condi

93 t use FNR to regulate anaerobic respiration, Shewanella oneidensis MR-1 uses the cyclic AMP receptor

94 nder anaerobic or oxygen-limited conditions, Shewanella oneidensis MR-1 uses the serine-isocitrate ly

95 The gammaproteobacterium Shewanella oneidensis MR-1 utilizes a complex electron t

96 s extracted from the periplasmic fraction of Shewanella oneidensis MR-1 were further identified using

97 the toxicity of AgNPs to a bacterial model (Shewanella oneidensis MR-1) decreases most significantly

98 Shewanella oneidensis MR-1, a gammaproteobacterium with

99 Using Shewanella oneidensis MR-1, an environmentally versatile

100 trometry (MS/MS) to annotate the proteome of Shewanella oneidensis MR-1, an important microbe for bio

101 his study, we used a model organism in MFCs, Shewanella oneidensis MR-1, and (13)C pathway analysis t

102 echnique, we investigated single colonies of Shewanella oneidensis MR-1, Bacillus subtilis 3610, and

103 networks in the dissimilatory metal reducer Shewanella oneidensis MR-1, global mRNA patterns were ex

104 507, originally annotated as hypothetical in Shewanella oneidensis MR-1, were suggested to encode nov

105 vestigate extracellular electron transfer in Shewanella oneidensis MR-1, where an array of nanoholes

106 the dissimilatory metal-reducing bacterium, Shewanella oneidensis MR-1, whose electron transport sys

107 c foundation for carbon source metabolism in Shewanella oneidensis MR-1.

108 with MtrA, a decaheme c-type cytochrome from Shewanella oneidensis MR-1.

109 variations impact biocurrent generation from Shewanella oneidensis MR-1.

110 anowires in the model metal-reducing microbe Shewanella oneidensis MR-1.

111 l modeling with bioreactor experiments using Shewanella oneidensis MR-1.

112 an existing genome-scale metabolic model of Shewanella oneidensis MR-1.

113 d biogenic and abiogenic Fe(III) minerals by Shewanella oneidensis MR-1.

114 al membranes and the Gram-negative bacterium Shewanella oneidensis MR-1.

115 f the dissimilatory metal-reducing bacterium Shewanella oneidensis MR-1.

116 f the dissimilatory metal-reducing bacterium Shewanella oneidensis MR-1.

117 y the dissimilatory metal-reducing bacterium Shewanella oneidensis MR-1.

118 rrays constructed with full length ORFs from Shewanella oneidensis, MR-1, were hybridized with genomi

119 alyze the metabolite composition of streaked Shewanella oneidensis MR1 and Pseudomonas stutzeri RCH2

120 similar resources and manual annotations on Shewanella oneidensis MR1 genome.

121 t Crp and Fnr sites, and expression from the Shewanella oneidensis nrfA control region cloned in E. c

122 nipulating the lipopolysaccharide content in Shewanella oneidensis outer membranes, we observed the e

123 tion of this method to the identification of Shewanella oneidensis peptides/proteins exhibiting diffe

124 fferent tryptic peptides from >2000 distinct Shewanella oneidensis proteins ( approximately 40% of th

125 0 unique peptides that covered 1443 distinct Shewanella oneidensis proteins from a 300-ng tryptic dig

126 When applied to a global tryptic digest of Shewanella oneidensis proteins, an order-of-magnitude in

127 platform is demonstrated for the analysis of Shewanella oneidensis proteome, which has considerable i

128 tching system of the aquatic Proteobacterium Shewanella oneidensis regulates post-translationally sig

129 ntly supports 10 organisms (Vibrio cholerae, Shewanella oneidensis, Saccharomyces cerevisiae, Schizos

130 g three independently derived AMT databases (Shewanella oneidensis, Salmonella typhimurium, Yersinia

131 s, including those from Nostoc sp. PCC 7120, Shewanella oneidensis, Shewanella woodyi, and Clostridiu

132 he ferrous-oxy complexes of human (hIDO) and Shewanella oneidensis (sIDO) indoleamine 2,3-dioxygenase

133 act of dimerization upon the activity of the Shewanella oneidensis (So) bCcP by the preparation of si

134 we provide genetic evidence that AQDS enters Shewanella oneidensis strain MR-1 and causes cell death

135 , we measured the rate of U(VI) reduction by Shewanella oneidensis strain MR-1 as function of NaHCO3

136 Shewanella oneidensis strain MR-1 can respire using carb

137 FF (Fl FFF) methodology to separate cells of Shewanella oneidensis strain MR-1 from exopolymers prese

138 The gamma-proteobacterium Shewanella oneidensis strain MR-1 is a metabolically ver

139 The Mtr respiratory pathway of Shewanella oneidensis strain MR-1 is required to effecti

140 Shewanella oneidensis strain MR-1 is well known for its

141 Here, we identify two gene clusters in Shewanella oneidensis strain MR-1 that each contain homo

142 Shewanella oneidensis strain MR-1 utilizes soluble and i

143 of hydrogenotrophic iron-reducing bacteria (Shewanella oneidensis strain MR-1) on the corrosion rate

144 Here, we show that Shewanella oneidensis strain MR-1, a nonfermentative, fa

145 he non-arsenate-respiring Shewanella species Shewanella oneidensis strain MR-1, has pleiotropic effec

146 Compared to a previous whole-cell study with Shewanella oneidensis strain MR-1, our findings suggest

147 ry metal reducing bacteria which include the Shewanella oneidensis strain MR-1.

148 n in the Gram negative gamma-proteobacterium Shewanella oneidensis strain MR-1.

149 ated substrates are encoded in the genome of Shewanella oneidensis strain MR-1.

150 rved physiological and metabolic activity of Shewanella oneidensis strain MR1 and Escherichia coli st

151 by fibers derived from a distant homolog in Shewanella oneidensis that shares less than 30% identity

152 Performance was evaluated using a Shewanella oneidensis tryptic digest, and approximately

153 a tagged alpha-subunit of RNA polymerase in Shewanella oneidensis under controlled growth conditions

154 nent of the metal reduction (Mtr) pathway of Shewanella oneidensis under the control of an arsenic-se

155 ke in the nonmethylating facultative aerobe, Shewanella oneidensis, under both anaerobic and aerobic

156 The mineral-respiring bacterium Shewanella oneidensis uses a protein complex, MtrCAB, co

157 The crystal structure of SO1698 protein from Shewanella oneidensis was determined by a SAD method and

158 ransformation experiments in the presence of Shewanella oneidensis were modeled with this exercise re

159 ranscriptomic studies to characterize Fur in Shewanella oneidensis, with regard to its roles in iron

160 resolution structure of a YiiP homolog from Shewanella oneidensis within a lipid bilayer in the abse