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   1  151 diverse E. coli isolates incorrectly as Shigella.                                               
     2 d modules for membrane antigens (GMMA), from Shigella.                                               
     3 is located on the large virulence plasmid of Shigella.                                               
     4 n different steps of the invasive process of Shigella.                                               
     5 action of MSD cases that are attributable to Shigella.                                               
     6 irulence genes icsA, virB, icsB, and ipaB in Shigella.                                               
     7 says and found that SE-1 reduced invasion by Shigella.                                               
     8 -expression of heat-labile enterotoxin), and Shigella.                                               
     9 ens were positive by traditional culture for Shigella.                                               
    10 ears) with dysentery or laboratory-confirmed Shigella.                                               
    11 haea, and 72 strains of Escherichia coli and Shigella.                                               
    12 ria, Staphylococcus, Klebsiella, Proteus and Shigella.                                               
  
    14  cases (Campylobacter: 738, Salmonella: 624, Shigella: 376, Yersinia: 17) were identified and followe
  
  
    17 iagnostic value, and antibiotic treatment of Shigella and dysentery), and meta-analyses where appropr
  
    19 mplications for virulence gene regulation in Shigella and other pathogens that control gene expressio
    20 and reliably detected Salmonella, EHEC O157, Shigella, and Campylobacter at concentrations 1- to 2-lo
  
    22 c relationships between different species of Shigella, and identified emerging pathoadapted lineages.
    23 and an increase in Enterobacter, Escherichia/Shigella, and Pseudomonas in stool after ABX + DS for 10
    24 ance in Escherichia, Salmonella, Klebsiella, Shigella, and Yersinia opportunistic pathogens, the stru
  
  
    27  by a conserved gatekeeper protein, MxiC, in Shigella As its molecular mechanism of action is still p
    28 porter gene assays with Escherichia coli and Shigella, as well as in vitro DNA binding assays with pu
    29 hogens, such as Salmonella, Escherichia, and Shigella, as well as ubiquitin/ubiquitin-like cross-reac
  
    31  aimed to systematically review and evaluate Shigella-associated and dysentery-associated mortality, 
  
    33 eneity was reported for meta-analyses of the Shigella-associated mortality studies (I(2)=78.3%) and d
  
    35 bundances of Pseudobutyrivibrio, Escherichia/Shigella, Blautia, and Streptococcus, while relative abu
    36 7:H7 and non-O157 EHEC strains as well as in Shigella boydii Furthermore, a truncated version of EspW
  
    38  to culture for the detection of Salmonella, Shigella, Campylobacter, and Shiga toxin-producing enter
    39 or each of enterotoxigenic Escherichia coli, Shigella, Campylobacter, Cryptosporidium, norovirus GII,
  
    41 ted for 5.0% and 5.4%, respectively, of 1130 Shigella case isolates; S. flexneri comprised 65.9% and 
    42  We were able to identify 90% of E. coli and Shigella clinical isolates correctly to the species leve
  
  
    45 hia coli genomes defined exclusive clades of Shigella; conserved genomic markers that can identify ea
    46 ria antagonize these responses; for example, Shigella delivers OspC3 to inhibit caspase-4, a potentia
  
  
  
    50  against Escherichia coli, Salmonella typhi, Shigella dysenteriae, Streptococcus pneumoniae and Staph
  
    52 dition, several enteropathogenic E. coli and Shigella effectors were found to inactivate members of t
    53 e cultures for Campylobacter, Salmonella, or Shigella entero-pathogens in traditional culturing metho
    54 chia coli (AF, 18.4% [95% CI, 12.9%-21.9%]), Shigella/enteroinvasive E. coli (AF, 14.5% [95% CI, 10.2
    55 [EPEC], and Shiga-toxigenic E. coli [STEC]), Shigella/enteroinvasive E. coli (EIEC), protozoa (Crypto
    56 cing E. coli (OR: 1.55; 95% CI: 1.04, 2.33), Shigella/enteroinvasive E. coli (OR: 1.65; 95% CI: 1.10,
    57 a, the major virulence factor of the strain, Shigella enterotoxin 1, H4 flagellin, and O104 lipopolys
    58 ination with bacterial genetics explains how Shigella evades a broad spectrum of immune surveillance 
    59 Our data demonstrate for the first time that Shigella evades the XIAP-mediated immune response by ind
  
    61 olysaccharide of the Gram-negative bacterium Shigella flexneri (S. flexneri) as a first step of bacte
    62 g unit from the O-specific polysaccharide of Shigella flexneri 2a, a major cause of bacillary dysente
    63 regative and uropathogenic Escherichia coli, Shigella flexneri 2a, and the hybrid enteroaggregative/S
    64 re observed for the NleE homologue OspZ from Shigella flexneri 6 that also bound TAB3 through the (49
    65 ected the transcriptional immune response to Shigella flexneri across different infection stages in b
  
  
    68 retained the ability to protect mice against Shigella flexneri and S. sonnei in the lethal pulmonary 
    69 e leading cause of bacterial dysentery, with Shigella flexneri and Shigella sonnei accounting for aro
    70  of the cytoplasmic regions of the vT3SSs of Shigella flexneri and the vT3SS and fT3SS of Salmonella 
    71 acter rodentium, Salmonella typhimurium, and Shigella flexneri are sensed in an ill-defined manner by
    72 arized epithelial Caco-2 cell monolayers and Shigella flexneri as a model enteropathogen, we found th
  
  
    75 entify candidate interaction partners of the Shigella flexneri effector proteins OspE1 and OspE2, whi
    76  contrast, the professional cytosol-dwelling Shigella flexneri escapes from LUBAC-mediated restrictio
    77 ield showing that Listeria monocytogenes and Shigella flexneri have evolved pathogen-specific mechani
  
    79 y of guanylate-binding proteins (GBPs) coats Shigella flexneri in a hierarchical manner reliant on GB
    80 els of enteropathogenic Escherichia coli and Shigella flexneri infection, WASp deficiency causes defe
    81 nal structure of Yersinia enterocolitica and Shigella flexneri injectisomes in situ and the first str
  
  
  
  
    86 ing the putative NF-T3SS C-ring component in Shigella flexneri is alternatively translated to produce
  
    88 e of the type-III secretion system needle of Shigella flexneri is determined to a precision of 0.4 A.
    89   The Gram-negative enteroinvasive bacterium Shigella flexneri is responsible for the endemic form of
    90 h-quality reference genome of the historical Shigella flexneri isolate NCTC1 and to examine the isola
    91 e show that the type III effector IpgB1 from Shigella flexneri may bind to acidic phospholipids and r
    92  E. coli isolates that were misidentified as Shigella flexneri or S. boydii by the kmer ID, and 8 wer
  
  
  
    96 mic analysis, we sequenced the oldest extant Shigella flexneri serotype 2a isolate using single-molec
    97  whole-genome sequenced clinical isolates of Shigella flexneri serotype 3a from high-risk and low-ris
    98 s research highlighting induced virulence in Shigella flexneri strain 2457T following exposure to bil
    99 Global proteomic analysis was performed with Shigella flexneri strain 2457T in association with three
   100 ) to visualize intact machines in a virulent Shigella flexneri strain genetically modified to produce
  
  
  
   104  Pseudomonas aeruginosa covalently linked to Shigella flexneri type 2a O-antigen (Sf2E) produced by e
   105 tigen J (IpaJ), a previously uncharacterized Shigella flexneri type III effector protein with cystein
   106  report the identification of two homologous Shigella flexneri type III secretion system effector E3 
   107 a pig model increased bacterial clearance of Shigella flexneri upon colonic infection, strongly sugge
   108 tro, plasma-derived IgA and SIgA neutralized Shigella flexneri used as a model pathogen, resulting in
  
   110 ng Escherichia coli, Salmonella typhimurium, Shigella flexneri, and Burkholderia thailandensis activa
  
  
   113 t attachment and invasion by deoxycholate in Shigella flexneri, deoxycholate negatively regulates Ics
   114  vivo studies with three omp null mutants of Shigella flexneri, including classic phage plaque assays
   115 ted with invasion and cell-to-cell spread by Shigella flexneri, including multiple components of the 
  
  
  
  
  
  
  
  
   124 glennhickey/progressiveCactus The E.coli and Shigella genome hub is now a public hub listed on the UC
   125 bly hub containing 57 Escherichia coli and 9 Shigella genomes and show examples that highlight their 
  
   127 -resistant strain, Ty21a-AR-Ss, by inserting Shigella glutaminase-glutamate decarboxylase systems coe
   128 ase burden and the emerging threats posed by shigella have accelerated interest in development of shi
  
  
   131 lled signal amplification was used to detect Shigella in stool and blood matrixes at the single-digit
   132 ed a quantitative PCR (qPCR) assay to detect Shigella in the stool samples of 3,533 children aged <59
   133 significantly decreased, whereas Escherichia-Shigella increased with reduction of protein concentrati
   134 tions accumulate in a long-lasting manner in Shigella-infected cells, causing subsequent formation of
   135 inflammasome-mediated release of IL-1beta in Shigella-infected macrophages; and (vi) iLPS exhibits a 
   136 d. vaccination with IpaB and IpaD to prevent Shigella infection and support further studies in humans
   137 ction of MSD cases that were attributable to Shigella infection increased from 9.6% (n = 129) for cul
   138 sentery for identification and management of Shigella infection might miss an opportunity to reduce S
  
   140 value of dysentery for the identification of Shigella infection, and the efficacy of antibiotics for 
  
  
  
  
  
  
  
  
  
   150  dysentery identified 1.9-85.9% of confirmed Shigella infections, with sensitivity decreasing over ti
  
  
  
  
  
   156  combined with an amplicon for the conserved Shigella invasion antigen, IpaH3, into a multiplex PCR a
   157 gle protein component of the T3SA translocon-Shigella IpaC, Salmonella SipC, or Chromobacterium CipC-
   158      Apoptotic B lymphocytes in contact with Shigella-IpaD are detected in rectal biopsies of infecte
  
  
  
  
   163 ble tool for rapid typing of uncharacterized Shigella isolates and provides a framework that can be u
   164 onships between antibiotic susceptibility of Shigella isolates and travel destination or other risk f
   165 patterns and risk factors for acquisition in Shigella isolates using routinely collected data for not
  
   167 ents notified during the study period, where Shigella isolates were tested for antimicrobial sensitiv
   168 correctly identifying 218 of 221 presumptive Shigella isolates, and sensitivity, by not identifying a
  
   170 s that the hydrophobic translocator (IpaB in Shigella) likely binds to a region within the tip protei
   171 era, Mycobacterium, Salmonella, Escherichia, Shigella, Listeria and Bartonella, using published liter
   172  cytosolic bacteria, including Burkholderia, Shigella, Listeria, Francisella, and Mycobacterium speci
   173 essed the question of the role played by the Shigella LPS in eliciting a dysregulated inflammatory re
  
  
   176 at co-expression of full-length IcsA and the Shigella membrane protease IcsP yields highly pure IcsA 
   177 nd genetic experiments to determine host and Shigella metabolism during infection in a cell culture m
   178 x and modulated the infectious properties of Shigella Moreover, structural elucidation of several Ipa
  
  
   181 The demonstrated ultrasensitive detection of Shigella on the single-digit CFU level suggests the feas
  
   183  of a gene and pathway previously unknown in Shigella pathogenesis and provides a framework for furth
  
  
   186  that the proximity of VirB binding sites to Shigella promoters does not necessarily correlate with t
   187 urthermore, we describe a mechanism by which Shigella promotes its own invasion by altering the sumoy
   188 ion of zebrafish containing a lethal dose of Shigella promotes pathogen killing, leading to increased
   189 ny pathogens, including the genera Yersinia, Shigella, Pseudomonas, and Salmonella, to deliver effect
  
  
   192 reactivity studies were conducted by testing Shigella, Salmonella spp., Salmonella typhimurium and St
   193 f the translocator components of the T3SA of Shigella, Salmonella, and Chromobacterium, we demonstrat
   194  Enterobacteriaceae (SPATEs) are secreted by Shigella, Salmonella, and Escherichia coli pathotypes.  
  
   196 TLR2 agonists, i.e., porins from Neisseriae, Shigella, Salmonella, Haemophilus influenzae, and Fusoba
  
   198 pecific multidrug-resistant (MDR) lineage of Shigella sonnei (lineage III) is becoming globally domin
   199 terial dysentery, with Shigella flexneri and Shigella sonnei accounting for around 90% of cases world
  
  
   202 analyze the largest surveillance data set of Shigella sonnei in the United States from 1967 to 2007 w
  
  
  
  
  
   208 ocytogenes, Salmonella entericaserovartyphi, Shigella sonnei, Campylobacter jejuni and Helicobacter p
   209 horylation intermediate (E2.Pi) of ZntA from Shigella sonnei, determined at 3.2 A and 2.7 A resolutio
  
  
   212 Common Structural Antigen, Listeria sp., and Shigella sp., dose-response curves were obtained, and li
  
  
   215 of E. coli are biochemically very similar to Shigella species and thus pose a greater diagnostic chal
  
  
  
  
  
   221    From 2000 to 2012, Vibrio cholerae O1 and Shigella species isolates from urban Dhaka and rural Mat
   222 was to characterize the genomic diversity of Shigella species through sequencing of 55 isolates repre
  
  
  
  
  
  
   229 norovirus genogroup II, Cryptosporidium, and Shigella species/enteroinvasive Escherichia coli were si
   230 tes representing members of each of the four Shigella species: S. flexneri, S. sonnei, S. boydii, and
  
   232 at-stable enterotoxigenic E coli, rotavirus, Shigella spp and enteroinvasive E coli, and Vibrio chole
   233 ected and 2063 (38.9%) had two or more, with Shigella spp and rotavirus being the pathogens most stro
  
   235 ly for adenovirus 40/41 (around five times), Shigella spp or enteroinvasive Escherichia coli (EIEC) a
   236 marily associated with Campylobacter spp and Shigella spp, fever and vomiting with rotavirus, and vom
   237 table pathogens became, in descending order, Shigella spp, rotavirus, adenovirus 40/41, ST-ETEC, Cryp
   238 E. coli (stx2), Campylobacter jejuni (mapA), Shigella spp. (ipaH), and a Salmonella enterica-specific
   239 hogens Shiga-toxin producing E. coli (STEC), Shigella spp. , Salmonella spp , Campylobacter jejuni/co
  
  
  
  
  
  
  
  
   248  protein of the type III secretion system in Shigella spp. that downregulates the human inflammatory 
   249 .2% for Salmonella spp., 99.1% and 99.7% for Shigella spp., 97.2% and 98.4% for C. jejuni and C. coli
   250 9.8% for Salmonella spp., 99.2% and 100% for Shigella spp., 97.5% and 99.0% for C. jejuni and C. coli
   251 ns IpaB and IpaD, which are conserved across Shigella spp., are candidates for a broadly protective, 
   252 ulture for the detection of Salmonella spp., Shigella spp., Campylobacter jejuni, and Campylobacter c
   253 oli (ETEC), enteropathogenic E. coli (EPEC), Shigella spp., Campylobacter jejuni, Salmonella enterica
   254 ttributed to Salmonella (nontyphoidal) spp., Shigella spp., Campylobacter spp. or Yersinia enterocoli
   255 eria (Campylobacter jejuni, Salmonella spp., Shigella spp., enterotoxigenic Escherichia coli [ETEC], 
   256 erall, the standard culture methods detected Shigella spp., EPEC, ETEC, and EAEC in smaller proportio
   257 er spp., Enterobacter spp., Escherichia coli/Shigella spp., Klebsiella oxytoca, Klebsiella pneumoniae
   258 ens, including Vibrio spp., Salmonella spp., Shigella spp., Yersinia spp., Citrobacter spp., enteroto
   259 cluding specific detection of E. coli O157), Shigella spp./enteroinvasive E. coli, Cryptosporidium sp
   260 rdia lamblia; 94% for ETEC and STEC; 93% for Shigella spp.; 92% for Salmonella spp.; 91% for C. diffi
  
   262 entions targeting five pathogens (rotavirus, Shigella, ST-ETEC, Cryptosporidium, typical enteropathog
   263 rcontinental dissemination of multiresistant shigella strains, facilitated by travellers and men who 
  
   265 s into how exposure to bile likely regulates Shigella survival and virulence during host transit and 
  
   267 uely complementing the multitude of included Shigella T3SS phenotype assays and providing a more comp
   268 nts of the exposed needle tip complex of the Shigella T3SS, invasion plasmid antigen D (IpaD) and Ipa
   269 eted effector kinase from the human pathogen Shigella that is required for the reduction of immune re
  
   271 ontinental spread of antimicrobial-resistant shigella through established transmission routes emphasi
  
   273 vantage of the ability of the enteropathogen Shigella to convert the phosphothreonine residue of the 
  
   275 the transcriptional regulation necessary for Shigella to effectively adapt to the mammalian host cell
  
   277  Escherichia coli, Salmonella, Yersinia, and Shigella, to subvert cell signaling and host responses. 
  
   279 knowledge, a direct physiologic role for the Shigella type III secretion apparatus (T3SA) in mediatin
   280 relates precisely with the activation of the Shigella type III secretion apparatus, thus evidencing i
  
  
   283 strate that the introduction of a functional Shigella type III secretion system, but none of its effe
   284 l imaging of infected zebrafish reveals that Shigella undergo rounding induced by the invasive predat
   285 human colonic lamina propria, encountered by Shigella upon its crossing of the mucosal barrier, are a
  
  
  
  
   290  have accelerated interest in development of shigella vaccines, many of which are being tested in cli
  
   292 neages of E. coli via the acquisition of the Shigella virulence plasmid and, in some cases, the Shige
  
  
  
   296 re and its similarity with that of MxiC from Shigella, we definitively confirm CopN as the Chlamydia 
  
  
   299 f SE-1 on invasion required preincubation of Shigella with SE-1, in agreement with the hypothesis tha
   300 bacteria, including Salmonella, Escherichia, Shigella, Yersinia, Pseudomonas, and Chlamydia spp.     
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