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1 T-DNA and ALC loci were not linked, as indicated by rand
2 T-DNA and transposon-based mutagenesis has been widely e
3 T-DNA and virulence proteins presumably form T-complexes
4 T-DNA inactivation of both Tric proteins further resulte
5 T-DNA insertion lines for ZML2 and its homolog ZML1 demo
6 T-DNA insertion mutants (atg mutants) of these genes dis
7 T-DNA insertion mutants are a tool used widely in Arabid
8 T-DNA insertion mutants have been widely used to define
9 T-DNA insertions in At3g50740 cause a sugar-insensitive
10 T-DNA insertions in each of these genes were identified,
11 T-DNA insertions in the genes represented by some cDNAs
12 T-DNA insertions in UKL1 and UKL2 reduced transcript exp
13 T-DNA insertions were identified in four of the five Ara
14 T-DNA inserts are stable; no transgene rearrangements we
15 T-DNA knock-out mutants of At3g57630 showed a truncated
16 T-DNA knockout of AtcpFHy/PyrP1 did not affect the flavi
19 id occur in plants homozygous for the dcl3-1 T-DNA insertion and was unaffected by loss of function o
21 o add to these resources we sequenced 21 165 T-DNA lines, 15 569 of which were produced in this study
22 HC-Pro transgenic Arabidopsis and the arf8-6 T-DNA insertion mutant showed little effect on the P1/HC
33 erance of an ERF74 overexpression line and a T-DNA insertion mutant using flow cytometry, transactiva
34 distachyon, we identified a line carrying a T-DNA insertion in one of the two eukaryotic initiation
36 rk, Arabidopsis thaliana plants containing a T-DNA disruption of the bile acid sodium symporter BASS6
40 Seedling growth was severely reduced in a T-DNA insertion mutant of ICE1, ice1-2, when grown on 1/
49 combinase was delivered on the Agrobacterium T-DNA injected at the axillary bud site, resulting in th
50 is is typically achieved using Agrobacterium T-DNA, biolistics or by stably integrating nuclease-enco
52 a putative function of AtVDACs, we analyzed T-DNA insertion lines in each of the corresponding genes
54 pressing the wild type version of bZIP16 and T-DNA insertion mutants for bZIP68 and GBF1 demonstrated
55 ng term transgene expression consistency and T-DNA insert stability can be achieved in sugarcane, sug
56 ng term transgene expression consistency and T-DNA insert stability can be achieved in sugarcane, sug
57 The discrimination between glu-5-hmC-DNA and T-DNA by DB-JBP1 is about 2-fold less, but enough for DB
58 eutrons (used for the induction of rfc4) and T-DNA (used for the induction of ife, which is not linke
68 o transport measurements, analyses of atmrp1 T-DNA insertion mutants of Arabidopsis ecotypes Wassilew
70 sion of AtSLD1 in Arabidopsis plants, AtSLD1 T-DNA mutants showed large reductions in Delta8 unsatura
73 tumefaciens requires the import of bacterial T-DNA and virulence proteins into the plant cell that ev
77 of the DUF579 family have been disrupted by T-DNA insertions contain less xylose in the secondary ce
78 nent), which on simultaneous inactivation by T-DNA insertion lines displayed a severely delayed and c
79 lt plant while knocking down miR408 level by T-DNA insertions or the artificial miRNA technique cause
83 light and plastid signals by characterizing T-DNA insertion alleles of genes that are regulated by l
87 gh double knockdown mutant plants containing T-DNA insertions in both genes are embryonic lethal, und
90 RFA complex in tobacco resulted in decreased T-DNA expression, as determined by infection with A. tum
91 encoding histone H2A-1, results in decreased T-DNA integration into the genome of Arabidopsis roots,
93 ted T4SS in vitro, we show that Osa degrades T-DNA in the T-DNA-VirD2 complex before its translocatio
95 wth attenuation in plants of a transfer DNA (T-DNA) insertion mutant of WRKY70 (wrky70) suggest that
97 revealed that double-stranded transfer DNA (T-DNA) intermediates can serve as substrates by as yet u
99 arious plants by delivering transferred DNA (T-DNA) and virulence proteins into host plant cells.
103 evidence suggests that double-stranded (ds) T-DNA, converted from T-strands, are potent substrates f
106 Here, we show that complex extrachromosomal T-DNA structures form in A. tumefaciens-infected plants
112 s for two additional rice varieties and four T-DNA tagged transformants from the Taiwan Rice Insertio
116 N. benthamiana and Arabidopsis thaliana GOX T-DNA insertion mutants are compromised for nonhost resi
122 er we examine callose deposition patterns in T-DNA insertion mutants (cs7) of the Callose Synthase 7
127 ons of Arabidopsis thaliana sequence-indexed T-DNA insertion mutants are among the most important res
128 associated with the use of sequence-indexed T-DNA mutants are described, including the need to genot
130 so developed inexpensive methods for INTACT, T-DNA insertion mapping, and profiling of the complete n
132 iguration and genomic position of integrated T-DNA molecules likely affect transgene expression, and
133 T-DNA mutants we observed were all intronic T-DNA mutants and the T-DNA fragments in both the trigge
134 demonstrate that the suppression of intronic T-DNA mutants is mediated by trans-interactions between
137 ucosinolate profile of an Arabidopsis ipmdh1 T-DNA knock-out mutant could be restored to wild-type le
138 ositol synthesis in Arabidopsis, we isolated T-DNA knockout lines of VTC4 that exhibit small perturba
139 f the host cell, Agrobacterium transfers its T-DNA--as a complex (T-complex) with the bacterial VirE2
140 tterns include illegitimate DNA end joining, T-DNA truncations, T-DNA repeats, binary vector sequence
146 ation of a new tomato (Solanum lycopersicum) T-DNA mutant allowed for the isolation of the CALCINEURI
148 Arabidopsis reference genome sequence to map T-DNA flanking sequence tags (FST) for over 325,000 T-DN
149 Arabidopsis thaliana lines containing mapped T-DNA insertions have become an important resource for p
151 a CMP or Ubi promoter, were used to monitor T-DNA insert stability and consistency of transgene enco
152 d Arabidopsis GTG1 and GTG2 and isolated new T-DNA insertion alleles of GTG1 and GTG2 in both Wassile
154 ber, and the frequency of integration of non-T-DNA portions of the T-DNA-containing vector (backbone)
159 ene network modeling and characterization of T-DNA mutants indicated that acyl-activating enzyme enco
160 s are present in a widely-used collection of T-DNA insertion lines, we analyzed 64 independent lines
162 ium strains transfer a single-strand form of T-DNA (T-strands) and Virulence (Vir) effector proteins
168 inhibited the transient expression level of T-DNA and only reduced T-DNA integration by 50% suggests
173 iews our current knowledge of the process of T-DNA integration and proposes ways in which this knowle
174 signaling, we examined ABA sensitivities of T-DNA mutants of a number of Arabidopsis thaliana DWD ge
175 gation analyses from two independent sets of T-DNA insertion mutants indicate that a double disruptio
178 m attachment to plant cells and transport of T-DNA to the nucleus have been identified, but the T-DNA
180 enized loss-of-function bin2 alleles and one T-DNA insertional mutation each for BIN2 and its two clo
186 nd near the coding base of the template in P/T DNA complexes with Klenow fragment (KF) DNAP as the po
187 s coupled to conformational changes in the P/T DNA of the complex that are partially regulated by the
188 ions and the conformational changes in the P/T DNA that occur during template-directed DNA synthesis
190 conformational changes in primer-template (P/T) DNA are involved in the selective incorporation of dN
191 Characterization of an independent paf1 T-DNA insertion allele and complementation by PAF1 confi
198 t expression level of T-DNA and only reduced T-DNA integration by 50% suggests that double-stranded T
199 ter-trap transformation vector that requires T-DNA integration into the plant genome to activate a pr
203 alt stress-related genes with available SALK T-DNA mutagenesis lines for phenotypic screening and ide
204 el mutant screen, combining a confirmed SALK T-DNA insertion collection with traditional forward gene
205 of more than 3700 confirmed homozygous SALK T-DNA insertion lines for visible defects under prolonge
209 e used a reverse genetics approach to screen T-DNA insertion mutants corresponding to all 47 of the A
211 imental procedures for efficiently screening T-DNA lines for the presence of chromosomal abnormalitie
212 ophysical and structural studies of the 2-Se-T DNAs reveal that the bulky 2-Se atom with a weak hydro
215 Southern blot analyses indicated a single T-DNA insertion in the mutant, located on chromosome 10.
216 ith impaired pollen development and a single T-DNA insertion in the transcription factor gene bHLH142
217 pproximately 40% for Arabidopsis msr1 single T-DNA insertion mutants and by more than 50% for msr1 ms
218 lection, we phenotypically characterized six T-DNA lines with insertions in genes previously shown in
222 gration by 50% suggests that double-stranded T-DNA intermediates, as well as single-stranded T-DNA, p
223 of the T-complex include the single stranded T-DNA, bacterial virulence proteins (VirD2, VirE2, VirE3
225 NA intermediates, as well as single-stranded T-DNA, play significant roles in the integration process
226 opose that termini of linear double-stranded T-DNAs are recognized and repaired by the plant's DNA do
230 e-indexed Arabidopsis (Arabidopsis thaliana) T-DNA insertion mutants for a diverse set of phenotypes.
236 rved were all intronic T-DNA mutants and the T-DNA fragments in both the trigger T-DNA as well as in
238 sing primers specific to the adapter and the T-DNA; sequencing of the PCR products; and identificatio
239 to the nucleus have been identified, but the T-DNA integration step during transformation is poorly u
242 racterization of a mutant that contained the T-DNA insertion in the promoter region of the TK1a gene.
244 CR amplification of the regions flanking the T-DNA insert(s) using primers specific to the adapter an
246 the number of unique insertion sites in the T-DNA collection by 21 078, bringing the overall total t
247 ing that disruption of BRIZ1 or BRIZ2 in the T-DNA insertion lines is responsible for the observed ph
248 ter-directed cytokinin oxidase 1 gene in the T-DNA insertion lines reduces the endogenous cytokinin l
250 vent, but certain structural features in the T-DNA mutants are needed in order for the suppression to
252 yses of multiple itb2 alleles, including the T-DNA insertion alleles, showed that the loss of ITB2/AL
258 immediately flanking the right border of the T-DNA insertion, which encoded an uncharacterized Broad
259 he right and left borders (RB and LB) of the T-DNA inserts and consists of five steps: extraction and
261 e regions flanking both the LB and RB of the T-DNA inserts significantly improves FST retrieval and t
262 e presence of a translocation, all 11 of the T-DNA lines showing an abnormal pollen phenotype were fo
265 of integration of non-T-DNA portions of the T-DNA-containing vector (backbone) into the genome of Ar
268 our genetic mapping experiments was that the T-DNA junctions on the 5'- and 3'-sides of a targeted ge
270 induction of ife, which is not linked to the T-DNA present in the line) can result in the duplication
272 ght, heat and aluminum stresses, whereas the T-DNA insertion mutant erf74 and the erf74;erf75 double
273 romosomal translocations associated with the T-DNA insertion site, but the prevalence of these rearra
275 results revealed that exon 5, along with the T-DNA, is removed in this mutant, resulting in a truncat
279 Here, we report characterization of three T-DNA insertional mutants of the gene encoding cytochrom
285 um tumefaciens strains and five transferred (T)-DNA origins of replication on transformation frequenc
286 and the T-DNA fragments in both the trigger T-DNA as well as in the suppressed T-DNA shared stretche
288 gitimate DNA end joining, T-DNA truncations, T-DNA repeats, binary vector sequences, and other unknow
291 l the least complex transgenic loci have two T-DNA copies in an inverted repeat configuration, center
293 Compared to the segregation of uncoupled T-DNAs in conventionally produced progeny, the incorpora
297 e to A. brassicicola and B. cinerea, whereas T-DNA insertion alleles are embryonic lethal, suggesting
298 the past decade, phenotypes identified with T-DNA-induced mutants have played a critical role in adv
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