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   1 nd aromatic residues along the length of the TM domain.                                              
     2 ough specific interactions with the receptor TM domain.                                              
     3 esent in ANAC017 just prior to the predicted TM domain.                                              
     4 ity connected to the periplasmic exit of the TM domain.                                              
     5 ually strong interhelical interaction in the TM domain.                                              
     6 dent on a critical length of the hydrophobic TM domain.                                              
     7 d by either the BH3 domain or the C-terminal TM domain.                                              
     8 ng antibodies than peptides with a monomeric TM domain.                                              
     9 absence of a targeting signal other than the TM domain.                                              
    10 strates, however, as it stabilized the first TM domain.                                              
    11 teracts with SERCA1 at least in part via its TM domain.                                              
    12 -helix connected by a disordered loop to the TM domain.                                              
    13 stitute a Golgi-targeting signal or a second TM domain.                                              
    14 he interstices between the outer ends of the TM domains.                                             
    15 tive orientation, including both soluble and TM domains.                                             
    16 eractions formed between TM3 and neighboring TM domains.                                             
    17 nique 44-amino acid proteins with randomized TM domains.                                             
    18 perfamily are encoded at least partly in the TM domains.                                             
    19  the pair of inner helices from the second 6-TM domains.                                             
    20  among their membrane-embedded alpha-helical TM domains.                                             
    21 channel-forming alpha-helical transmembrane (TM) domain.                                             
    22  and F-actin via a C-terminal transmembrane (TM) domain.                                             
    23 eins containing only a single transmembrane (TM) domain.                                             
    24 e of the envelope counterpart transmembrane (TM) domain.                                             
    25  presenilin enhancer 2 in the transmembrane (TM) domain.                                             
    26 ain a predicted alpha-helical transmembrane (TM) domain.                                             
    27 main (CD) following the third transmembrane (TM) domain.                                             
    28 tial contribution of the TatA transmembrane (TM) domain.                                             
    29 e nitrilase domain fused to a transmembrane (TM) domain.                                             
    30  conserved HxxxW motif in the transmembrane (TM) domain.                                             
    31 lation of RNF144A through its transmembrane (TM) domain.                                             
    32 cally predicted to have 30-40 transmembrane (TM) domains.                                            
    33  of the recombinant lectin-like domain of TM-TM domain 1 (rTMD1)-in antiangiogenesis were investigate
  
    35 mutant transporters, predicts transmembrane (TM) domains 1, 3, 6, and 8 comprise the 5-HT-binding poc
  
  
  
    39 to interact with the alphaIIb transmembrane (TM) domain activate single alphaIIbbeta3 molecules in pl
  
    41 aramyxovirus parainfluenza virus 5 F protein TM domain, alanine scanning mutagenesis was performed.  
    42 ipid environments and can function as a real TM domain, although not as efficiently as the bona fide 
  
    44 ules in platelets by binding to the alphaIIb TM domain and causing separation of the alphaIIbbeta3 TM
    45 efore, understanding the extent to which the TM domain and ECL2 conformations are coupled is useful. 
  
    47 occurs when the JM domain is linked to FGFR3 TM domain and not simply anchored to the plasma membrane
    48 n important role for the self-associating L2 TM domain and the conserved GxxxG motifs in the transfer
    49 sults suggest a mechanism involving both the TM domain and the DD of p45 to regulate p75-mediated sig
    50 ds by a mechanism that is independent of the TM domain and the TM domain participates in the enlargem
    51 horin A (GpA) contain a GxxxG motif in their TM domains and form a homodimer, but the association aff
    52  of different factors (primary structures of TM domains and juxtamembrane regions, composition and ph
    53 on between the conformational changes of the TM domains and of the intracellular juxtamembrane domain
  
  
  
    57 t contain one of two possible transmembrane (TM) domain and flanking sequences that either restrict t
    58  which shares homology in the transmembrane (TM) domain and in a conserved region close to the BH3 do
    59 ox2/4) consisting of the Nox2 transmembrane (TM) domain and the Nox4 dehydrogenase (DH) domain showed
  
    61 ypeptide that contains seven trans-membrane (TM) domains and other motifs that are characteristics of
  
    63 allest separation between the transmembrane (TM) domains and the highest possible phosphorylation, a 
    64 pid nanoparticles using natural and designed TM domains, and antibody affinity was measured using imm
    65  extracellular (EC) domain, a transmembrane (TM) domain, and an intracellular domain that includes a 
  
  
  
    69 ceptor contacts within the extracellular and TM domains are critical for the establishment of the unl
    70 t share the extracellular and transmembrane (TMD) domains, as well as an intracellular domain known a
  
    72 complete fusion, the role of synaptobrevin's TM domain association in the fusion process remains poor
  
    74 es in the conformation of the transmembrane (TM) domain, brought about by changes in interactions of 
  
  
    77 rongly indicate that the proto-oncogenic Neu TM domain can adopt multiple (at least two) oligomeric c
    78 first time that class I viral fusion protein TM domains can self-associate as trimeric complexes in t
    79 nthetic peptides derived from transmembrane (TM) domains can interact with a full-length GPCR, blocki
    80 domain of the chimera with the glycophorin A TM domain causes intramembrane dimerization and conseque
    81 re both two-helical motifs, whereas the KdpD TM domain comprises a four-helical bundle with shorter s
  
  
  
  
  
    87 nker structure, dynamics, and resulting ecto-TM domain coupling of integrin alphaIIb in model constru
    88 -TM domain transition and the degree of ecto-TM domain coupling represents an important parameter in 
  
    90 of construct C8 (a construct that contains a TM domain deletion of eight amino acids from the C termi
    91 sment of dimerization heterogeneity of these TM domains demonstrated that 7 of them have a unique dim
  
    93 ion at i, i+4 positions at the center of the TM domain dimer eliminates the barrier and stabilizes th
  
    95 s intrinsic to the physical character of the TM domain dimer, with a significant energy barrier separ
  
    97 ce motifs for RTK dimerization and about how TM domain dimerization in model systems relates to RTK a
    98 dress this controversy by showing that ErbB1 TM domain dimerizes in lipid bilayers and by calculating
    99 volve more slowly than do EM domains, though TM domains display increased rate heterogeneity relative
  
   101 adhering to immobilized ligand, the integrin TM domains do not form homo-oligomers, suggesting that i
  
   103   Lipid intercalation between the separating TM domains during channel opening would be facilitated i
  
  
  
  
   108 absence of SRP this structure is lost as the TM domain exits the tunnel; however in the presence of S
   109 n cell membranes, they are limited to either TM domains expressed in an inverted orientation or captu
   110  Sequence-Structure (GRoSS) alignment of the TM domains for all human GPCR sequences is sufficient to
   111 reverse orientation, and are limited to only TM domains for proper membrane trafficking and integrati
  
   113 how that the receptor complex transmembrane (TM) domains form an intimately associated eight-helix bu
   114 s, which are coupled with the transmembrane (TM) domains forming the pathway for anion permeation.   
   115 regions (residues 618-660), we show that the TM domain forms an alpha-helical homodimer mediated by c
   116 iophysical methods, we find that the rat Neu TM domain forms strong oligomers and, similar to previou
   117  addition, chimeric GP64 proteins containing TM domains from CD4, GpA, HA, and OpMNPV F were incorpor
   118 4 proteins containing either a GPI anchor or TM domains from LdMNPV F or HIV-1 GP41 failed to localiz
   119 ity of a gp64 null virus, whereas those with TM domains from OpMNPV GP64 and thogotovirus GP75 rescue
  
   121 ct three-dimensional atomic structure of the TM domains from sequences for a set of 23 nonhomologous 
   122  by replacing this domain with the F protein TM domains from two other paramyxoviruses, Sendai virus 
   123      A potential hydrogen-bonding role for a TM domain glutamine was also investigated, and it was fo
   124 fect on the T3S process, indicating that the TM domain has no sequence-specific function in the assem
   125 ated receptor tyrosine kinase transmembrane (TM) domains have been shown to form sequence-specific di
   126 ins a V to E mutation at position 664 in the TM domain, have been analyzed to improve our understandi
  
   128 eptide containing the Ostbeta transmembrane (TM) domain heterodimerized with Ostalpha, although the r
   129 imal external region (MPER) connected to the TM domain: i.e., the missing parts of the EBOV GP2 struc
  
   131 e canonical hydrophobic groove displaces the TM domain in a competitive manner, allowing BclXL to dis
   132 sured the potential dimerization of the NS4A TM domain in a well-characterized two-hybrid TM protein 
   133 in and reveal a fundamental role of the NS4A TM domain in coordinating HCV RNA replication and virus 
   134 lecular dynamics simulations of the isolated TM domain in explicit lipid bilayers coupled to thermody
  
  
   137 cute respiratory syndrome virus has only one TM domain in micelles, whereas the predicted beta-coil-b
   138  as we observe that dimerization of the Neu* TM domain in the Escherichia coli inner membrane strongl
   139 in transmembrane (TM) domains implicated the TM domain in the fusion process, but the structural and 
   140 mbrane (TM) regions revealed that the second TM domain in the proposed 4-TM model of VKOR does not fu
  
  
  
   144 ) and helped to elucidate the association of TM domains in the epidermal growth factor family of rece
   145 copies of a Shaker-like six-transmembrane (6-TM) domain in each subunit and are ubiquitously expresse
   146 copies of a Shaker-like six-transmembrane (6-TM) domain in each subunit and are ubiquitously expresse
   147 l domains to their respective transmembrane (TM) domains in transmitting the conformational changes i
  
   149 embly of the membrane occurred with the syb2 TM domain inserted, as expected from experimental data. 
  
  
  
   153 lizing antibodies can bind the MPER when the TM domain is a three-helix bundle and this presentation 
   154 s basic role in membrane anchoring, the GP64 TM domain is critically important for GP64 trafficking, 
  
   156  p45 with the cysteine 257 of p75 within the TM domain is necessary for p45-p75 heterodimerization.  
   157 between TatA TM domains, suggesting that the TM domain is not the sole driving force behind oligomeri
  
  
  
  
   162 ion due to mutations in their transmembrane (TM) domain is not well understood, and different mechans
   163  ligand pocket located in the transmembrane (TM) domain is occupied, ligand-specific conformational c
  
   165 ane-proximal linker (LD), and transmembrane (TMD) domains is required and sufficient to trigger fusio
  
  
  
   169 antifying the effect of the pathogenic A391E TM domain mutation on the stability of the fibroblast gr
  
   171 actant micelle possesses a "GG kink," in the TM domain near the dynamic hinge located at G37/G38.    
   172 e region at the interface between the EC and TM domains, near the interlobe groove of NCT, emerges as
  
   174 es, our method can predict structures of the TM domain of beta-barrel membrane proteins of novel topo
  
   176 ly, replacement of the YscD TM domain with a TM domain of dissimilar sequence had no effect on the T3
  
   178  that equivalent F, D, and T residues in the TM domain of FcepsilonR1alpha markedly influence the bio
  
   180 embly by replacing the entire first or third TM domain of HBsAg with the transmembrane domain of HIV 
  
  
  
   184  a domain-swapped trans fashion, whereby the TM domain of one monomer occupies the canonical hydropho
  
   186 ed tryptophan-asparagine sequence within the TM domain of Ostbeta to alanines did not prevent cell su
  
   188 relies on a conformational change within the TM domain of PhoQ induced by a perturbation in cell memb
   189     Therefore, our data demonstrate that the TM domain of RNF144A has at least two independent roles,
  
   191 erization motif G(18)X(3)AX(2)G(25) in the N-TM domain of SR-BI contributes substantially to the homo
   192 the channel transmembrane (TM) domain to the TM domain of syntaxin 1A to trigger transmitter release.
   193 lar, the role of tapasin binding to the core TM domain of TAP1 single chains is mysterious because th
   194 infrared spectroscopy show that the isolated TM domain of the active W515K mutant has a helix tilt an
   195 gest that intersubunit crevices found in the TM domain of the ATP-bound crystal structure are not pre
  
  
   198 sults show that the specific sequence of the TM domain of the NDV F protein is important for the conf
   199 ai virus (SV) and measles virus (MV), or the TM domain of the unrelated glycoprotein (G) of vesicular
  
   201 have identified critical residues within the TM domains of ABCG1 that are both essential for sterol t
  
   203 ar interaction between the extracellular and TM domains of C99(15-55) is enhanced in the micelle envi
   204  G380 and A391E mutations in dimerization of TM domains of FGFR3 and their consecutive contributions 
   205 on was utilized to demonstrate that isolated TM domains of Hendra virus F protein associate in a mono
   206 G380R and A391E mutations on dimerization of TM domains of human fibroblast growth factor receptor 3 
  
   208  template had low sequence-similarity to the TM domains of the CNG channels, and to reconcile conflic
   209 ved region adjacent to the last two putative TM domains of the protein, that when mutated, affects un
   210  we report three backbone structures for the TM domains of the three classes of Escherichia coli hist
   211 es with known structures: the transmembrane (TM) domain of a bacterial channel, and the cyclic nucleo
   212 f the central residues of the transmembrane (TM) domain of M2 are significantly enhanced by Cu(II), a
   213 hydrophobic match between the transmembrane (TM) domain of membrane proteins and the surrounding lipi
   214  of specific sequences in the transmembrane (TM) domain of Newcastle disease virus (NDV) fusion (F) p
  
  
   217 extra interactions in seven-transmembrane (7-TM) domain of Smo due to an additional 2-pyridylmethyl g
   218 dentified in the N-terminal transmembrane (N-TM) domain of SR-BI a conserved glycine dimerization mot
   219 g site is present in the core transmembrane (TM) domain of TAP1 and is used only by the unassembled s
  
   221   However, replacement of the transmembrane (TM) domain of the chimera with the glycophorin A TM doma
  
   223   In this study, we align the transmembrane (TM) domains of all experimental GPCR structures to maxim
  
  
   226 ragment encoding the last six transmembrane (TM) domains of PC1 and the C-terminal tail (QIF38), a se
  
   228 the cytoplasmic tail (CT) and transmembrane (TM) domains of tetherin alone produced its characteristi
   229  analyses have identified the transmembrane (TM) domains of these subunits as active participants in 
  
   231 e approximately 3 kcal/mol energy barrier to TM domain opening and the approximately 2 kcal/mol energ
   232  virus 5 F (PIV5 F) and either the MPER, the TM domain, or the cytoplasmic tail of the F proteins of 
   233 that is independent of the TM domain and the TM domain participates in the enlargement or expansion o
   234  atomic structure of the pore-transmembrane (TM) domain peptide has been determined by x-ray crystall
   235 , particularly the length of the hydrophobic TM domain, play critical roles in membrane anchoring, me
   236   In aggregate, these data indicate that the TM domain plays a functional role in fusion beyond merel
  
  
   239  peptide with a trimeric, three-helix bundle TM domain recapitulates the binding profile of the nativ
  
  
  
   243  analyses have indicated that transmembrane (TM) domain residues can affect folding or function of vi
   244 such forces to the intravesicular end of the TM domain resulted in tilting motion of the TM domain th
   245 as found, and analysis of the Hendra virus F TM domain revealed a heptad repeat leucine-isoleucine zi
   246 s both functions contains the transmembrane (TM) domain (roughly residues 22-46) for the amantadine-s
   247    In addition to the classic transmembrane (TM) domain, RXFP1 possesses a large extracellular domain
   248     The single mutants had a small effect on TM domain separation and cell death, whereas the double 
   249 he double mutant significantly increased the TM domain separation and more than doubled the sensitivi
   250  TM domain with a nondimerizing poly-Leu/Ala TM domain sequence also blocked pilus production but not
   251 residue peptide having the IR transmembrane (TM) domain sequence activates IR, but not related growth
  
  
   254 M2 ectodomain and residues 24-36 of the A/M2 TM domain show 85% amantadine/rimantadine sensitivity an
   255 e free energy of association reveal that the TM domains show a significant affinity to self-associate
   256 s and validated in cytokine receptors by the TM domain structure of the cytokine receptor common subu
   257 ed relatively weak interactions between TatA TM domains, suggesting that the TM domain is not the sol
   258   To evaluate the role of the transmembrane (TM) domain, synthetic MPER-derived peptides were incorpo
  
  
   261 osed conformation, MscS shows a more compact TM domain than in the crystal structure, characterized b
   262 is studies identify critical residues in the TM domains that are important for ABCG1 to alter sterol 
  
  
   265 y, MAVS contains a C-terminal transmembrane (TM) domain that is essential for both type I interferon 
   266 nilins are proteins with nine transmembrane (TM) domains that function as catalytic subunits of the g
   267 partic acid residues in their transmembrane (TM) domains that mediate assembly, via interaction with 
   268 to previous observations for the human ErbB2 TM domain, the oncogenic mutation results in a reduced l
   269 /off switch in the integrin's transmembrane (TM) domain; the integrin's alpha and beta subunits each 
   270  TM domain resulted in tilting motion of the TM domain through the membrane with an activation energy
   271 equences corresponding to D1R transmembrane (TM) domains TM5 and TM6, which also selectively modified
   272 ail (CT) domain or its CT and transmembrane (TM) domains (TMCT) with counterparts from BPIV3 F, with 
   273 halves of P-gp each contain a transmembrane (TM) domain (TMD) with 6 TM segments followed by a nucleo
   274     Drug-binding sites in the transmembrane (TM) domains (TMDs) are connected to the nucleotide-bindi
   275  constructs containing immunotags before the TM domain to assess membrane insertion using proteinase 
   276 ation process, but the contribution of ErbB1 TM domain to dimer stability is not known, with publishe
   277 ization assay, we show a propensity for this TM domain to self-associate in a GxxxG-dependent manner.
  
   279 lar binding of its C-terminal transmembrane (TM) domain to the canonical hydrophobic groove in a doma
   280 s propagated from the channel transmembrane (TM) domain to the TM domain of syntaxin 1A to trigger tr
   281  is a conserved uncoupling motif of the ecto-TM domain transition and the degree of ecto-TM domain co
   282 o probe the importance of the closed-to-open TM domain transition in the overall energetics of recept
   283 iganded dimeric state of FGFR3 by its JM and TM domains via a mechanism that is distinctly different 
  
   285 xamine specific sequence requirements of the TM domain, we generated a variety of GP64 TM domain muta
   286 ions of various lengths and positions in the TM domain were also examined for their effects on viral 
  
   288 while mutant proteins with the VSV G protein TM domain were less efficiently expressed on cell surfac
   289  Mutant proteins with the SV or MV F protein TM domains were expressed, transported to cell surfaces,
   290 f pore-lining inner helices from the first 6-TM domains, whereas membrane potential only activates th
   291 we can identify weakly stable regions in the TM domain, which are found to be important structural de
   292 ogous copies of a six-transmembrane-helix (6-TM) domain, which has no sequence homology to the canoni
   293 but because of the unembedded transmembrane (TM) domain, which serves as a dose-dependent degradation
  
  
   296    However, structural studies involving the TM domain with or without the amphipathic helix differed
   297 ects of the V(664)E mutation in the isolated TM domain with respect to protein-protein and protein-li
   298 --> Leu substitutions) or by replacing the N-TM domain with those from other CD36 superfamily members
  
   300  it is not clear whether studies of isolated TM domains yield knowledge that is relevant to full-leng
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