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1 Tn complexes containing cTnT1 and cTnT4 (both fetal isof
2 Tn is composed of TnC, TnI, and TnT.
3 Tn syndrome is a rare autoimmune disease in which subpop
4 Tn-Seq is a high throughput technique for analysis of tr
5 Tn-Seq is an experimental method for probing the functio
6 Tn-seq is based on the assembly of a saturated Mariner t
7 Tn-seq measures the frequency of actual members of a het
8 Tn-seq was used to identify genes essential for phototro
12 employing 22 million Europeans in a euro 1.5 Tn endeavour, being the premier global economic growth o
13 C. burnetii clone was isolated containing a Tn insertion within the C terminus of the cell division
17 h may be important in understanding aberrant Tn antigen expression in human diseases, including IgA n
20 ing of the intensity profiles obtained after Tn exchange at pCa 5.8 suggest that the profiles are bes
21 tic efficacy of CAR T cells directed against Tn-MUC1 and present aberrantly glycosylated antigens as
22 molecule, also known as EpCAM) and mucin Ags Tn, sialylated Tn, Thomsen Friedenreich (TF), and MUC1 a
24 r of ways that the periodic occurrence of An/Tn clusters could reflect evolution and function of gene
25 s, characterized by 10-base pair periodic An/Tn-clusters (PATCs), can license transgenes for germline
27 cal methods have been proposed for analyzing Tn-Seq data to identify genetic interactions, including
28 te HMM provides an improved way of analyzing Tn-seq data and assessing different levels of essentiali
29 s, Tn(c)-keyhole limpet hemocyanin (KLH) and Tn(c)-palmitic acid (PAM) with the saponin immunologic a
33 analysis available for most transposons and Tn-Seq associated approaches (e.g. TraDis, HiTS, IN-Seq)
35 (ZPS) PS A1 and the well-known tumor antigen Tn has been designed, synthesized, and studied for immun
37 mmon tumor-associated carbohydrate antigens, Tn and sialyl Tn (STn), result from somatic mutations in
38 s of tumor-associated carbohydrate antigens, Tn and STn, were assembled on a single cyclic peptide sc
39 a cluster of the most common TACA (known as Tn antigen) covalently attached to T-cell peptide epitop
40 oped a CAR that recognized cancer-associated Tn glycoform of MUC1, a neoantigen expressed in a variet
42 melanoma-derived cells lines, expressed both Tn and STn antigen due to loss-of-function mutations in
44 role of eight additional genes identified by Tn-seq in A. baumannii resistance to killing by NHS but
45 nditionally essential proteins identified by Tn-seq were analyzed by targeted proteomics, and 70% of
48 cal model in which strong A-M binding and Ca-Tn binding independently activates the rate of A-M weak-
49 on actin either through calcium-troponin (Ca-Tn) binding or by actin-myosin (A-M) strong binding.
54 A3-presenting asialofetuin and the clustered Tn-rich asialo-bovine submaxillary mucin, were subsequen
55 netic interactions, which involves comparing Tn mutant libraries generated in different genetic backg
57 esponse to immunization with two conjugates, Tn(c)-keyhole limpet hemocyanin (KLH) and Tn(c)-palmitic
59 prior to this work, the size of the discrete Tn cluster remained at T3, with only 10 metal sites (e.g
62 nge in rigor myofibrils was used to estimate Tn dissociation rates from the nonoverlap and overlap re
63 as tested on simulated data and experimental Tn-Seq data from Serratia marcescens transposon mutant l
68 The higher affinities of SBA and VML for Tn-PSM relative to Fd-PSM indicate the importance of car
69 The higher affinities of SBA and VML for Tn-PSM relative to its two shorter chain analogs demonst
71 gests that Ca(2+) binding to each functional Tn activates < 7 actins of a structural regulatory unit
72 y exposed in the absence of core 1 O-glycan, Tn antigen, in the colon epithelium of a subset of UC pa
76 osamine-transferases (GalNAc-Ts) drives high Tn levels in cancer cell lines and in 70% of malignant b
77 h Ca(2+) dissociated from site II of cTnC in Tn complexes also depended on the cTnT isoform present.
79 identifying conditionally essential genes in Tn-Seq experiments with high detection sensitivity and s
80 eletal) muscle, Ca(2+) binding to individual Tn complexes is insufficient to completely activate thei
81 , screened genome-wide transposon insertion (Tn-seq) and transcriptome (RNA-seq) libraries to charact
84 se activity as a function of pCa and labeled Tn exchange in rigor myofibrils was used to estimate Tn
88 fluorescently labeled Tm to directly measure Tn binding, we show that binding of Tn to both isoforms
89 high-throughput strategy based on the method Tn-seq that can be applied to any genetically manipulata
91 These T4 clusters are the largest molecular Tn clusters known to date and can be made in various com
93 II-phosphorylated Tn complex with the native Tn complex in the fiber bundles resulted in inhibition o
94 n concomitant Ca(2+) binding at neighbouring Tn sites and/or crossbridge feedback effects on Ca(2+) b
95 synthase instead expressed the nonsialylated Tn antigen in these cells and developed brain hemorrhage
99 measure Tn binding, we show that binding of Tn to both isoforms is similar (0.1-0.5 microm) and both
102 erived 81 amino acid tandem repeat domain of Tn-PSM containing approximately 23 alpha-GalNAc residues
110 th the hypothesis that Tm in the presence of Tn and Ca2+ exerts a positive allosteric effect on actin
111 was tested by measuring the apparent rate of Tn dissociation from rigor skeletal myofibrils using lab
114 hanism of calcium enhancement of the rate of Tn dissociation is by favoring a TnI-TnC interaction ove
119 This report reveals the protective role of Tn fetal isoforms as they rescue the increased Ca(2+) se
120 R-regulated TTSS repressor, another round of Tn mutagenesis was carried out in the background of a pr
121 ived 38/40 amino acid cleavage product(s) of Tn-PSM containing approximately 11-12 alpha-GalNAc resid
124 nin (Tn) isoform expression and/or status of Tn phosphorylation, we studied fiber bundles that had be
125 ange influence of the strong cross-bridge on Tn to enhance its dissociation rate, tens of nanometers
126 timulation of cell migration is dependent on Tn-bearing proteins present in lamellipodia of migrating
128 lts that show exon 6 has little influence on Tn affinity to actin.Tm or its ability to fully inhibit
130 However, the affinity of bound SBA for other Tn-PSM molecules during cross-linking is much higher tha
131 ed chaperone may have implications for other Tn-related disorders such as IgA nephropathy, a conditio
132 ty of bound SBA for GalNAc residues on other Tn-PSM molecules appears to be due to the favorable entr
134 Moreover, exchange of ROCK-II-phosphorylated Tn complex with the native Tn complex in the fiber bundl
136 ecretion, and the number of IL-17A-producing Tn cells were elevated in Il17ra(-/-) and Il17ra(-/-)Itg
137 The total number of CD3+ IL-17A-producing Tn cells were significantly reduced in the spleen and la
144 in mZP3) are exclusively core 1 and related Tn sequences, whereas core 2 O-glycans predominate at th
145 show that expression of the disease-related Tn antigen can result from deregulation or loss of Cosmc
146 nd approximately 2300 alpha-GalNAc residues (Tn-PSM) binds to the soybean agglutinin (SBA) with a K(d
147 mately 2300 GalNAcalpha1-O-Ser/Thr residues (Tn-PSM) has been ascribed to an internal diffusion mecha
148 d be regarded as conformationally restricted Tn antigen mimics, as we have demonstrated by biological
149 n (Tm) resulting from changes in troponin's (Tn) interaction with actin-Tm: a blocked (B) state preve
151 tigated the DNA methylation pattern of an SB Tn as well as the flanking genomic region at insertion s
152 aken together, these results suggest that SB Tn insertions into the mouse genome can be discriminated
153 l part of the eGFP coding sequence in the SB Tn exhibited high levels of CpG methylation in transgeni
156 suggested that a fluorescent reporter cis SB-Tn system can be used to enrich mammalian cells harborin
157 ere a novel dual fluorescent reporter cis SB-Tn system that permitted nonselective fluorescent-activa
159 ant enrichment (>60%) of cells exhibiting SB-Tn-mediated genomic insertions and long-term expression
164 ere assessed using ToxT and in vivo RNA-seq, Tn-seq, and cholera stool proteomic and other genome-wid
165 transposon mutagenesis and deep sequencing (Tn-seq) to identify T6SS immunity proteins in Vibrio cho
168 e used transposon insertion site sequencing (Tn-seq) to comprehensively assess the contribution of ne
170 next-generation high-throughput sequencing (Tn-seq) promises to revolutionize systems level analysis
171 um resistance, a transposon (Tn) sequencing (Tn-seq) approach was used to identify genes contributing
172 previously reported a transposon sequencing (Tn-seq) system for performing genomewide assessment of g
175 tory factors, we used transposon-sequencing (Tn-Seq)(5) to screen for mutations affecting the growth
177 ociated carbohydrate antigens, Tn and sialyl Tn (STn), result from somatic mutations in the gene Cosm
179 scrimination of the cancer-associated sialyl-Tn (STn) antigen was developed by using Sambucus nigra a
180 alylated O-glycans, the disaccharide, sialyl-Tn (sialic acid alpha2,6GalNAc), is expressed by 30% of
181 corporation into the carcinoma marker Sialyl-Tn, and is the first example of such a novel mechanism f
182 ing ST6GalNAc-I and the expression of sialyl-Tn is evident, demonstrating that the expression of sial
183 demonstrating that the expression of sialyl-Tn results from switching on expression of hST6GalNAc-I.
186 known as EpCAM) and mucin Ags Tn, sialylated Tn, Thomsen Friedenreich (TF), and MUC1 all reacted comp
191 C-ms proteomics), gene essentiality studies (Tn-seq), genome wide protein localization studies, and g
196 mmune responses derived from single naive T (Tn) cells, single primary, and single secondary central
197 f IL-17A-expressing neutrophil-regulatory T (Tn) cells; CD4(-)CD8(-)alphabeta(low), CD4(+)CD8(-)alpha
198 ocked down in ESCC cell lines (KYSE450 and T.Tn), immortalized normal esophageal epithelial cell line
202 ero-inflated Poisson model for analyzing the Tn-seq data that are high-dimensional and with an excess
203 In cancer cells, some glycans (such as the Tn antigen) are highly up-regulated, but this remains la
204 n with terminal GalNAc moieties, such as the Tn antigen, on CD45 of effector T cells, thereby down-re
206 tures of MUC1-like glycopeptides bearing the Tn antigen (alpha-O-GalNAc-Ser/Thr) in complex with an a
207 Identification of the genes disrupted by the Tn revealed 24 distinct loci required for anaerobic grow
211 of a scFv antibody fragment specific for the Tn-glycoform of MUC1 had potent activity in preclinical
213 ase, the only enzyme that galactosylates the Tn antigen (GalNAcalpha1-Ser/Thr-R) to form core 1 Galbe
214 g synthetic glycopeptides with O-GalNAc (the Tn antigen) or O-GlcNAc, we demonstrated that the method
215 address this question in the context of the Tn 10 transposition reaction, in which the DNA cleavage
216 T-synthase and consequent expression of the Tn antigen (GalNAcalpha1-Ser/Thr), which is associated w
217 sm underlying the abnormal expression of the Tn antigen, which may be important in understanding aber
218 evidence that ROCK-II phosphorylation of the Tn complex, most likely at cTnT, has an important role i
222 ncer specimens that showed expression of the Tn/STn antigens were also found to have mutations in Cos
224 tion of antibodies that are selective to the Tn-antigen glycan and cross-reactive toward mucin protei
225 ate construct confers specificity toward the Tn antigen alone, and specific carbohydrate immunoglobul
230 ion (R = tert-butyl, R' = H, Me, 2'-thienyl (Tn), L = Cl(-), NCS(-), NCO(-), N(3)(-)), has been chara
231 riation and morphological trends within this Tn library, and in various C. jejuni wild type strains,
232 rs Gal from UDP-Gal to GalNAcalpha1-Ser/Thr (Tn antigen) to form the core 1 O-glycan Galbeta1-3GalNAc
234 time course of myosin-S1 binding to actin-Tm-Tn filaments in solution at various calcium levels with
235 n of native Tm and troponin (Tn) complex (Tm-Tn) in cardiac myofibril preparations has been developed
237 udies showed that 1) depletion of >80% of Tm-Tn from myofibrils resulted in a complete loss of the Ca
238 2) reconstitution of exogenous wild-type Tm-Tn resulted in complete regain in the calcium regulation
243 teractions and favored by calcium binding to Tn, and an open or M state allowing strong myosin intera
244 ing negative cooperativity of SBA binding to Tn-PSM correlates with a decreasing level of internal di
247 pC, we identified mutants from a transposon (Tn) insertion library which lack surface-exposed Ebp pil
249 A. baumannii serum resistance, a transposon (Tn) sequencing (Tn-seq) approach was used to identify ge
252 red for anaerobic growth, random transposon (Tn) mutagenesis was used to screen for mutants that demo
253 d potential drug targets, random transposon (Tn) mutants derived from the A. baumannii strain AB307-0
255 system, the Sleeping Beauty (SB) transposon (Tn) to insert a wild-type beta-globin expression cassett
256 the wide activity of the Mariner transposon, Tn-seq has the potential to contribute to the exploratio
257 t least in part by the troponin-tropomyosin (Tn-Tm) switch on the thin (actin-containing) filaments.
261 on/reconstitution of native Tm and troponin (Tn) complex (Tm-Tn) in cardiac myofibril preparations ha
262 nd Lethocerus tropomyosin (Tm) and troponin (Tn) regulate the binding of rabbit myosin to rabbit acti
263 ils by replacing endogenous Tm and troponin (Tn) with recombinant Tm mutants and purified skeletal Tn
265 en years ago, mutations in cardiac troponin (Tn)T and alpha-tropomyosin were linked to familial hyper
266 force-pCa relationship, endogenous troponin (Tn) was exchanged in rat ventricular trabeculae with eit
267 To rule out any alterations in troponin (Tn) isoform expression and/or status of Tn phosphorylati
268 In skeletal and cardiac muscles, troponin (Tn), which resides on the thin filament, senses a change
269 ropomyosin (Tm) in the presence of troponin (Tn) and Ca2+ enhances both force and velocity, and a tru
270 uence data suggest the presence of troponin (Tn) components, consistent with actin-linked regulation,
271 nteraction with and functioning of troponin (Tn) has been studied using recombinant fibroblast Tm iso
273 ding and dissociation of Ca(2+) on troponin (Tn) to the movement of tropomyosin on actin filaments.
274 Ca(2+) via the regulatory proteins troponin (Tn) and tropomyosin (Tpm), which are associated with act
275 ase the calcium sensitivity of the troponin (Tn) complex or reconstituted thin filaments with or with
276 of synthetic filaments of actin-Tm-Troponin (Tn), and weakens Tm binding to the actin-myosin subfragm
277 ning of Tm along the actin (Ac):Tm:troponin (Tn) thin filament to block or expose myosin binding site
278 was further reconstituted without troponin (Tn), and the kinetic constants of the elementary steps o
283 ysis of a saturated mutant GAS library using Tn-sequencing and generation of a conditional-expression
284 sequenced in a high throughput manner using Tn-seq to identify potential mechanisms of xds regulatio
286 on bottlenecks in a murine host, we utilized Tn-seq to monitor the composition of mixed populations o
288 imilar reduction also could be observed when Tn contained cTnI(Thr>Pro) (deltaEC50=0.24+/-0.04 microm
290 a(2+) dissociation rates (k(off)) from whole Tn complexes containing sTnC (26 +/- 0.1 s(-1)), cTnC (3
291 vors exhibited abnormalities correlated with Tn antigen expression that are related to several human
296 ed myocardium was further reconstituted with Tn, and the effect of MgATP on the rate constants (K(1),
300 icular trabeculae with either wild-type (WT) Tn, non-phosphorylatable cTnI (S23/24A) Tn or phosphomim
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