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1 UGA appears not to function as a stop codon and is in eq
2 UGA codon reassignment renders SR1 genes untranslatable
3 UGA translation as selenocysteine is absolutely dependen
9 e the unusual amino acid selenocysteine at a UGA codon, which conventionally serves as a termination
12 ntain a selenocysteine residue, encoded by a UGA codon, as the penultimate carboxyl-terminal amino ac
16 lutathione peroxidase 1 (Se-GPx1) contains a UGA codon that is recognized as a codon for the nonstand
17 that the percentage of ribosomes decoding a UGA codon as selenocysteine rather than termination can
18 n, we used a reporter gene system that has a UGA codon within the protein-coding region of the lucife
19 of selenoproteins requires the decoding of a UGA codon as selenocysteine (Sec) instead of translation
23 actors are necessary for "read-through" of a UGA stop codon that specifies selenocysteine incorporati
25 Functional evidence for the absence of a UGA suppressor tRNA in the cytosol, using a reporter gen
26 e conductance regulator (CFTR) W1282X PTC (a UGA codon) in the context of its three upstream and down
28 translational cofactors to "read-through" a UGA-stop codon that specifies SEC incorporation at the a
29 1 (NF1) mRNA changes an arginine (CGA) to a UGA translational stop codon, predicted to result in tra
30 ocysteine incorporation element along with a UGA codon into a reporter construct allows for read-thro
31 lch gene produces a single transcript with a UGA stop codon separating two open reading frames (ORF1
33 verexpressing eRF1 and eRF3, and of altering UGA codon context, on the efficiency of selenoprotein sy
34 teine Insertion Sequence (SECIS) element and UGA codon are sufficient for selenocysteine (Sec) insert
36 nd overexpression of the cysteine mutant and UGA-terminated proteins in the baculovirus insect cell s
38 a coli glutamine tRNA, suppress UAG, UAA and UGA termination codons, respectively, in a reporter mRNA
40 each of the three stop codons (UAG, UAA, and UGA) and facilitates release of the nascent polypeptide
42 tandard genetic code recognize UAA, UAG, and UGA as stop codons, whereas variant code species frequen
46 on in eukaryotes occurs cotranslationally at UGA codons via the interactions of RNA-protein complexes
49 that Sec is more efficiently incorporated at UGA codons positioned in the middle of the coding region
51 -kDa GFP/GPX1 proteins, Sec incorporation at UGA codons, formerly close to the 5' or 3' ends, was inc
53 , whereas Trp, Arg, and Cys were inserted at UGA, and the frequency of insertion of individual amino
55 nthesis and insertion of Cys into protein at UGA codons and suggest new biological functions for thio
63 to the primary sequence arrangement between UGA codons and SECIS elements, their proximity within th
64 steine incorporation as the distance between UGA codons is increased, and that efficient selenocystei
68 nd twenty second amino acids, are encoded by UGA and UAG, respectively, which are the codons that usu
69 are amino acid in protein that is encoded by UGA with the requirement of a downstream mRNA stem-loop
74 ncy of Sec incorporation can be modulated by UGA position; Sec incorporation at high efficiency appea
77 Furthermore, the deletion was found to cause UGA readthrough on its own, thereby implicating helix 73
78 also confirm here a previous report that CCC UGA is a translational frameshift site, in these experim
84 ted into selenoproteins in response to codon UGA with the help of the selenocysteine insertion sequen
88 er by replacing the natural tnaC stop codon, UGA, with UAG or UAA in a tnaC-stop codon-tnaA'-'lacZ re
92 ease factor to one of the three stop codons (UGA, UAA or UAG) results in the termination of protein s
94 n the four readthrough candidates containing UGA-CUAG, this motif is conserved not only in mammals bu
95 first is a conserved, inefficiently decoded UGA codon in the N-terminal region, which appears to ser
96 ons downstream of this inefficiently decoded UGA which confer the potential for nonsense-mediated dec
101 ec incorporation at the first and downstream UGA codons occurs with variable efficiencies to control
105 -nucleotide-long fragments representing each UGA codon context into a luciferase reporter construct h
106 n immediately downstream of the Sec-encoding UGA codon, whereas in eukaryotes a completely different
108 djacent to, or near, selenocysteine-encoding UGA codons in the Sps2, SelH, SelO, and SelT selenoprote
111 ncorporation (i.e., after decoding the first UGA codon as selenocysteine) are fully competent to term
112 Selenocysteine incorporation at the first UGA codon is inefficient but increases by approximately
113 G read-through element upstream of the first UGA codon or by providing a competing messenger RNA in t
114 fic expansion of the genetic code allows for UGA codons to specify the amino acid selenocysteine (Sec
115 he stem (G1922) is specifically critical for UGA codon recognition by the class 1 release factor RF2.
116 appears analogous to cis-acting elements for UGA translation as selenocysteine, although different me
120 n the 3'-untranslated region and an in-frame UGA codon are the requisite cis-acting elements for the
121 D helix in ribosomes stalled at the in-frame UGA codon of prfB generates tension on the mRNA that des
122 nic amino acid encoded by a recoded in-frame UGA codon that does not operate as the canonical opal st
124 from Metridium senile that has four in-frame UGA codons and two nearly identical SECIS elements.
126 s by translational recoding whereby in-frame UGA codons are redefined to encode the selenium containi
128 75)Se labeling showed that all four in-frame UGA codons supported Sec insertion and that both SECIS e
129 diated decay due to the presence of in-frame UGA codons that can be decoded as either selenocysteine
136 er protein synthesis levels exhibited higher UGA readthrough, which was confirmed with ribosome-targe
140 nt loops of this conserved rRNA structure in UGA-dependent translation termination and, taken with pr
141 etic code alterations in ciliates, including UGA --> tryptophan in Blepharisma americanum and the dis
142 c and metabolic features with SR1, including UGA to glycine reassignment and an archaeal-type ribulos
143 ncorporation is able to repress G418-induced UGA readthrough as well as eRF1-induced stimulation of t
144 the C terminus and the adjacent inefficient UGA termination codon act to recruit the SsrA-tagging sy
153 on model that incorporated Sec at non-native UGA codons at rates equal to those of endogenous glutath
159 SECIS) elements required for the decoding of UGA as a selenocysteine in the 3'-untranslated region (U
162 t increase in ribosome density downstream of UGA-Sec codons for a subset of selenoprotein mRNAs and t
163 le effects on ribosome density downstream of UGA-Sec codons that demonstrate gene-specific difference
165 don context in determining the efficiency of UGA readthrough at each of the 10 rat Sel P Sec codons,
170 elements conducting multiple occurrences of UGA redefinition to control the synthesis of full-length
171 tion RNA structures, the coding potential of UGA codons, and the presence of cysteine-containing homo
172 However, it is expressed in the presence of UGA suppressors, or when the structural gene for polypep
173 ant differences, spanning an 8-fold range of UGA readthrough efficiency, were observed, but these dif
176 136) whose expression caused readthrough of UGA nonsense mutations in certain codon contexts in vivo
180 incorporated into proteins via "recoding" of UGA from a stop codon to a sense codon, a process that r
181 oding genes, is essential for recognition of UGA as a codon for Sec rather than as a stop signal.
183 lian selenoprotein mRNAs, the recognition of UGA as selenocysteine requires selenocysteine insertion
185 of selenoprotein messages by redefinition of UGA codons, which normally specify termination of transl
187 nslation level by differential regulation of UGA redefinition and Sec incorporation efficiency, altho
188 ss that is characterized by up-regulation of UGA-selenocysteine recoding efficiency and relocalizatio
190 t the first reported 16 S rRNA suppressor of UGA mutations was not a C1054 deletion but rather the ba
193 coplasma genes encoding the P30 adhesin (one UGA) of Mycoplasma pneumoniae and methionine sulfoxide r
194 example, Tetrahymena species recognize only UGA as a stop codon, while Euplotes species recognize on
195 Ribosomes encountering premature UAA or UGA codons in the CAN1 mRNA fail to release and, instead
201 Sec or Cys in MsrBs, whereas the three other UGA codons evolved recently and had no homologs with Sec
203 co-translationally inserted at a predefined UGA opal codon by means of Sec-specific translation mach
207 ntified mutations in Eo/Sc eRF1 that restore UGA recognition and define distinct roles for the TASNIK
212 for Um, and tRNA(Pro(GGG)) for Am. tRNA(Ser(UGA)), previously observed as a TrmJ substrate in Escher
214 )UCA level was increased and the mt tRNA(Ser)UGA level was decreased, suggesting that TRIT1 may contr
215 p, only tRNA(Ser)AGA, tRNA(Ser)CGA, tRNA(Ser)UGA, and selenocysteine tRNA with UCA (tRNA([Ser]Sec)UCA
216 f these identity elements into the tRNA(Ser)(UGA) scaffold resulted in phosphorylation of the chimeri
218 as most selenoprotein mRNAs contain a single UGA codon and a single SECIS element, selenoprotein P ge
220 co-translationally incorporated at specific UGA codons that normally serve as termination signals.
224 rected by translational recoding of specific UGA codons located upstream of a stem-loop structure kno
226 ec-tRNA(Sec)) to the ribosome and suppresses UGA codons that are upstream of Sec insertion sequence (
229 enoenzyme, a cysteine mutant enzyme, and the UGA-terminated protein in mammalian cells and overexpres
231 the inefficient incorporation of Sec at the UGA codon during mRNA translation augments the nonsense-
233 Although the major readthrough event at the UGA codon was insertion of tryptophan, Sec was also inco
234 chain as compared with selenocysteine at the UGA codon, expression of the catalytically inactive Gpx4
242 loop RNA structure immediately following the UGA codon and forms part of the coding sequence in bacte
244 noproteins and for ribosome pausing near the UGA-Sec codon in those mRNAs encoding the selenoproteins
246 t immediately upstream and downstream of the UGA codon significantly affects termination to incorpora
252 of C to T seven nucleotides upstream of the UGA stop codon of ssfR was responsible for the phenotype
254 elenocysteine (Sec), through recoding of the UGA stop codon, creates a unique class of proteins.
257 on of selenocysteine (Sec) into protein, the UGA codon is transformed from one that signals translati
259 y incorporated into proteins by recoding the UGA opal codon with a specialized elongation factor (Sel
260 decoded by the same sequence that spans the UGA stop codon of rabbit beta-globin mRNA were detected.
261 high efficiency appears to require that the UGA be >21 nucleotides from the AUG-start and >204 nucle
263 uence element approximately 4.8 kb 3' to the UGA codon in the active center and three short open read
266 to three amino acids that correspond to the UGA stop codon site and/or one or two of the immediate d
267 the approximately 150 nt 3'-adjacent to the UGA, and RNA folding algorithms revealed the potential f
270 peroxidase-1 (F-GPX1) expression vector, the UGA at the native position (U47) was mutated to a cystei
272 asmic nonsense-mediated decay (NMD) when the UGA selenocysteine (Sec) codon is recognized as nonsense
273 xpression was reduced to 20 and 50% when the UGA stop codon was replaced by UAG or UAA, respectively,
274 oforms arise from the same mRNA and that the UGAs that specify the second, third, and seventh selenoc
280 n initiation, structures located adjacent to UGA codons, additional coding sequence regions necessary
281 ique tRNA with an anticodon complementary to UGA, a unique elongation factor specific for this tRNA,
282 trations of translational components lead to UGA readthrough heterogeneity among single cells, which
284 ocysteine (Sec) into proteins in response to UGA codons is directed by selenocysteine insertion seque
285 ocysteine (Sec) into proteins in response to UGA codons requires a cis-acting RNA structure, Sec inse
286 is inserted cotranslationally in response to UGA codons within selenoprotein mRNAs in a process requi
288 are amino acid selenocysteine in response to UGA stop codons have helped provide a better understandi
289 e sole Trp codon in the sequence (Trp271) to UGA, decreased both the number of flagella and the abili
296 d in about 50% inhibition of expression when UGA was replaced by UAG or UAA and the appropriate suppr
299 side-induced readthrough were observed, with UGA showing greater translational readthrough than UAG o
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