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1 UTR-seq provides a general strategy to uncover the rules
2 UTR-seq revealed two temporal degradation programs: a ma
5 ated region (UTR) lengthening in head and 3' UTR shortening in testis, and characterize new tissue an
6 lrn1-UTR (Clrn1 cDNA including its 5' and 3' UTR) under the control of regulatory elements (Atoh1 3'
9 a subset of stress-related genes exhibits 3' UTR extensions of their mRNAs during dehydration stress.
10 d to display APA, S. pombe showed greater 3' UTR size differences among APA isoforms than did S. cere
11 t (DSE) motifs drive broad alterations in 3' UTR isoform expression across the Drosophila phylogeny.
12 a novel function for these stress-induced 3' UTR extensions as long noncoding RNAs in the regulation
13 f one mouse in vivo can also regulate its 3' UTR reporter in the liver of another mouse through serum
15 al PASs lead to higher abundances of long 3' UTR isoforms than short ones, a feature that is opposite
16 In contrast, the translocation of longer 3' UTR mRNAs from RNPs to polysomes correlated with the pro
19 wnstream targets, transcriptome-wide mRNA 3' UTR interaction sites were experimentally determined at
20 e from mice carrying genomic deletions of 3' UTR selenocysteine-insertion-sequences (SECIS1 and SECIS
25 ex control of alternative tissue-specific 3' UTR formation and its consequences for post-transcriptio
27 d microRNA, miR-204, directly targets the 3' UTR of GLP1R and thereby downregulates its expression in
33 me accumulation at stop codons and in the 3' UTR, suggesting a global defect in termination in the ab
38 ehydration stress could induce transcript 3' UTR extensions and elucidate a novel function for these
39 r analysis suggests that transcripts with 3' UTR extensions have weaker poly(A) signals than those wi
43 tion (APA) generates mRNAs with different 3' UTRs, but the involvement of this process in stress resp
46 data suggest that transcripts with longer 3' UTRs tend to contain distal miRNA binding sites and are
48 observed a majority of miR-122 binding on 3' UTRs and coding exons followed by extensive binding to o
51 rget site utilization localizes mainly to 3' UTRs, in Chlamydomonas utilized target sites lie predomi
53 ression of two distinct forms of the HLA-A 3'UTR based on use of either the proximal or the distal PA
54 urvey the entire regulatory landscape of a 3'UTR, and apply it in a multiplex fashion to analyse comb
55 ound an enrichment of eccDNAs at exons and 3'UTR (enrichment folds from 1.36 to 3.1) as well as the D
56 ranslated region (UTR) hypomethylation and 3'UTR hypermethylation of the cellular epitranscriptome, r
57 e CACNA1A gene, including the promoter and 3'UTR regions, in 49 unrelated patients diagnosed with epi
58 -GWAS identified the associated exonic and 3'UTR variants within the FGF5 and RSPO2 genes, respective
60 ads us to suggest a novel relation between 3'UTR length and sensitivity to CPA factor expression.
61 lls, C/EBPbeta activation is suppressed by 3'UTR-mediated localization of Cebpb transcripts to a peri
62 clin levels and describe a recurrent CCND1 3'UTR mutation associated with increased expression in end
63 sum, our study unveils that the extensive 3'UTR editing of METTL7A is merely a footprint of ADAR bin
65 transfected with a plasmid containing FXI-3'UTR.These results should open the door to new therapeuti
67 binding, translation enhancer (TSS) in its 3'UTR that serves as a hub for interactions throughout the
68 or gene with multiple editing sites at its 3'UTR, we demonstrate that its expression could be repress
70 nally independent target sites in the KRas 3'UTR and clinically significant correlation between miR-1
73 anisms: local synthesis requiring the long 3'UTR form of CaMKII mRNA and a process that requires zygo
76 LA-A allotype that uses primarily the long 3'UTR, whereas an allotype expressing only the short form
79 enriched HuR binding to mRNAs with longer 3'UTR and with higher density of U/AU-rich elements, sugge
82 APA changes, including a general trend of 3'UTR shortening and activation of intronic APA isoforms.
83 ding on the target location site (5'UTR or 3'UTR), LIN41 triggers repression of translation or mRNA d
85 hermore, specific blocking of the proximal 3'UTR reduced surface expression without decreasing mRNA e
86 ry neurons and the 3' untranslated region (3'UTR) landscapes after unilateral sciatic nerve entrapmen
87 importance of 3 prime untranslated region (3'UTR) non-coding regulatory variants across neurodevelopm
88 ch elements of the 3' untranslated region (3'UTR) of numerous pro-inflammatory cytokines including IL
96 ls through canonical RNAi by targeting the 3'UTR of critical survival genes in a unique form of off-t
98 f editing events alter the sequence of the 3'UTR of targeted transcripts, and we focus on one cell ty
99 also found that MSI1 directly binds to the 3'UTR of Tensin 3 (TNS3) mRNA, a negative regulator of cel
101 revealed that miR-1 directly regulates the 3'UTR of the E3 ubiquitin ligase Nedd4 Analysis of embryon
102 entified a novel miR-SNP (rs713065) in the 3'UTR region of FZD4 gene linked with decreased risk of de
103 ns eliminated one-site RdRp binding to the 3'UTR, suggesting that RdRp binding to the adenylates disr
107 I-transcribed ES, as well as conserved VSG 3'UTR 16-mer sequences for the generation of functional le
108 mRNA enrichment in the affected axons with 3'UTR alterations potentially contributing to the mechanis
110 s suggest that further development of ZIKV-3'UTR-LAV is warranted for humans.Zika virus infection can
112 ated region of the Zika virus genome (ZIKV-3'UTR-LAV) prevent viral transmission during pregnancy and
113 ncovered an important role for variants in 3'UTRs, especially those affecting binding of the PUF fami
114 ssues produce mRNAs with particularly long 3'UTRs, suggesting that such extensions might be important
121 s (TSS1500 and TSS200), 1st exons, 5'UTRs, 3'UTRs, CpG islands, shores, shelves, open seas and FANTOM
129 emonstrates the duality and complexity of 3'-UTR sequences in regulation of gene expression and provi
130 1 by type I and II interferons depends on 3'-UTR post-transcriptional regulation, whereas the promote
131 teracted with the 3' untranslated region (3'-UTR) of Igf2r mRNA, and the association of CUGBP1 with I
136 de signal within the APOE region (rs6857, 3'-UTR=PVRL2, p=2.21x10(-12)), and a suggestive signal for
138 atively polyadenylated, producing a short 3'-UTR isoform that excludes regulatory elements, including
141 gh PRDM1 mRNA in CD38(-) cells lacked the 3'-UTR harboring miRNA binding sites regulating mRNA stabil
144 is caused by expanded CTG repeats in the 3'-UTR of the dystrophia myotonica protein kinase (DMPK) ge
155 by EBV miR-BHRF1-2-5p was confirmed using 3'-UTR luciferase reporter assays and Western blot assays.
160 However, targeting CXCL1, CXCL6 and CXCL8 3'-UTRs unexpectedly led to substantial mRNA decreases.
167 emonstrated that 3' untranslated regions (3'-UTRs) regulate gene expression by controlling mRNA stabi
168 promote the interaction of two subunits, 3'-UTRs enable the formation of protein complexes with dive
170 cted interactions between miR-153 and the 3'-UTRs of Cltc, Lamp1 (in a prior study), Clcn4 and Slc4a4
171 assays showed that targeting these three 3'-UTRs increased mRNA stability, as predicted by the repor
175 Here, we demonstrate that the full-length 5 UTR of the zorO type I toxin hinders its own translation
177 ive effects on translation imparted by the 5 UTR can be transferred onto a reporter gene, indicative
182 , these results indicated that both HIV-1 5' UTR and the 5' gag sequence are required for efficient p
183 t antisense lncRNAs interact first with a 5' UTR-containing promoter-spanning transcript, which is th
184 ely inhibits translation of mRNAs bearing 5' UTR methylation, but not mRNAs with 5' terminal oligopyr
185 e of the presence of G4 in human P1-HNF4A-5' UTR in vitro, and establishes a novel working model of s
187 egative correlations being more common in 5' UTR and positive correlations in the gene 'Body' region.
194 t with chemically modified ASOs targeting 5' UTR inhibitory regions in the mRNAs encoding these prote
195 vel variants (<5%) distributed across the 5' UTR and P1 genomic region in all three Sabin serotypes,
198 , we showed that a genetic variant in the 5' UTR of DDX39B reduces translation of DDX39B mRNAs and in
201 ndary structure, G-quadruplex (G4) in the 5' UTR of P1-HNF4A, the predominant HNF4alpha isoform(s) in
203 rved across mammals and overlaps with the 5' UTR of the interleukin 1 receptor-associated kinase (IRA
204 adding the 5' half of the gag gene to the 5' UTR strongly facilitates the packaging of two reporter R
205 ractions of RBPs with the G4 motif in the 5' UTR to promote cell proliferation during liver developme
206 putative protein-binding sites within the 5' UTR was necessary and sufficient to mediate a strong tra
210 quence coding region of NA into different 5' UTRs confirmed that NS1 can promote the translation of s
212 s (uORFs), located in transcript leaders (5' UTRs), are potent cis-acting regulators of translation a
213 half a million 50-nucleotide-long random 5' UTRs and assayed their activity in a massively parallel
215 l results indicated that G4 motifs in the 5' UTRs of other liver-enriched transcription factors also
217 134 mimic repressed translation of Sabin-1 5'UTR driven luciferase validating the mechanism of miR-13
224 nctional genome annotations (e.g., exon or 5'UTR), total linkage disequilibrium (LD) scores and heter
226 nslation, the SIN1 5' untranslated region (5'UTR) was fused with luciferase reporter and named as 5'S
228 thout the SIN1 5'UTR, suggesting that Sin1 5'UTR is necessary for Pdcd4 to inhibit Sin1 translation.
229 ot the control luciferase without the SIN1 5'UTR, suggesting that Sin1 5'UTR is necessary for Pdcd4 t
230 at, depending on the target location site (5'UTR or 3'UTR), LIN41 triggers repression of translation
236 s an antigen-presenting gene (CD1A), where 5'UTR mutations correlate significantly with decreased sur
237 promoters (TSS1500 and TSS200), 1st exons, 5'UTRs, 3'UTRs, CpG islands, shores, shelves, open seas an
238 by mTORC1 and Akt/S6K1 dissociates it from 5'UTRs and relieves its inhibitory activity on RP mRNA tra
239 nal regulation, and the importance of HAdV 5'UTRs for precisely coordinated viral protein expression
241 s supported by analysis of deleted/mutated 5'UTRs and two native regulatory single-nucleotide polymor
244 ents cause the fusion of the promoter and 5'-UTR of the androgen-regulated TMPRSS2 (transmembrane pro
249 e human KRAS transcript contains a G-rich 5'-UTR sequence (77% GC) harboring several G4 motifs capabl
251 wn TSSs and all but 18 nucleotides of the 5'-UTR had virtually no effect on the level of gene express
253 3' coding portion of the EGFR gene to the 5'-UTR of the SEC61G, yielding products lacking the entire
254 nd plays important roles beyond unwinding 5'-UTR structure is consistent with a recent proposal that
255 ms with 3' ends that lie within annotated 5'-UTRs were overrepresented in polysomes and were as stabl
256 latory program governed by their distinct 5'-UTRs and that this regulation ultimately determines alph
260 EV-enclosed mRNAs are mostly fragmented, and UTRs enriched; nevertheless, some full-length mRNAs are
263 ring a transgene, TgAC1, consisting of Clrn1-UTR (Clrn1 cDNA including its 5' and 3' UTR) under the c
266 n critical regions of the genome (promoters, UTRs, and introns), while being depleted in coding and i
267 tissue expression of UII and UII receptors (UTR) are increased in diabetic nephropathy, it remains u
268 method targeting the 5' untranslated region (UTR) and P1 genomic region to characterize vaccine-relat
270 (SLB) located in the 5' untranslated region (UTR) are critical for binding the viral polymerase NS5 t
271 Targeting the IL1R1 3' untranslated region (UTR) by EBV miR-BHRF1-2-5p was confirmed using 3'-UTR lu
272 ral complexity of the 5'untranslated region (UTR) derives from bacterial and other riboswitches.
273 consists of a short 3'-untranslated region (UTR) form lacking regulatory elements that guide local t
274 enomic variation in the untranslated region (UTR) has been shown to influence HLA class I expression
275 nt infection induces 5' untranslated region (UTR) hypomethylation and 3'UTR hypermethylation of the c
276 pecific APA, such as 3' untranslated region (UTR) lengthening in head and 3' UTR shortening in testis
277 in expression of the 5' untranslated region (UTR) of mRNAs in the yeast Saccharomyces cerevisiae.
279 lex structure in the 5' untranslated region (UTR) of NRF2 mRNA, as measured by circular dichroism, nu
280 region, the 5'- and 3'-untranslated region (UTR) of SAMHD1, and the mechanism responsible for the ce
282 quent variant in the 3' untranslated region (UTR) of the mutant allele, which disrupts the most dista
284 mechanism involving a 3 untranslated region (UTR) selenocysteine insertion sequence (SECIS) and the S
285 mRNAs possess a long 5 untranslated region (UTR) that serves as the target site of the corresponding
287 8-bp deletion in its 5'-untranslated region (UTR), conferring the spontaneous brown midrib trait and
288 a part of the viral 5' untranslated region (UTR), is critical for the initiation of dengue virus rep
289 otif within the mutS 5' untranslated region (UTR), repressing translation in the absence of sRNA part
290 n was located in the 5'-untranslated region (UTR), suggesting that the intron affects transcription i
291 NAs within the egl-1 3' untranslated region (UTR), which affect both mRNA copy number and translation
295 Thus far, only the 3' untranslated regions (UTRs) of MICA, MICB, and UL16-binding protein 2 were sho
296 ry structure in the 5'-untranslated regions (UTRs) of mRNAs to promote their recruitment to the eukar
299 challenged GMCs were attenuated by selective UTR antagonist, TRPC4 channel blocker, and CaMKII and CR
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