ライフサイエンスコーパス: accession

1 null background in a regenerable Arabidopsis accession.

2 y identified thymol as being specific to the accession.

3 s between individual plants even of the same accession.

4 rance of a majority of anthocyanins for each accession.

5 n the genomes of root cells from a different accession.

6 4% of infections were present at the time of accession.

7 a wild (Solanum habrochaites LA1777) tomato accession.

8 ted through genome sequencing of 117 diverse accessions.

9 ion map for 352 wild and domesticated cotton accessions.

10 g sequence and expression across A. thaliana accessions.

11 und in a number of mustard (Brassica juncea) accessions.

12 est and least conserved in sequence for most accessions.

13 l side of the leaf, and is impaired in a few accessions.

14 st conserved in amino acid sequence for most accessions.

15 und to modulate Pst DC3000 resistance in two accessions.

16 n virus-host interactions in 190 Arabidopsis accessions.

17 chemicals in 398 modern, heirloom, and wild accessions.

18 tion of 267 georeferenced landraces and wild accessions.

19 identified and quantified 123 unique protein accessions.

20 worldwide collection of Arabidopsis thaliana accessions.

21 he yellow color fruits made by many F. vesca accessions.

22 57 (23.9%) are represented by fewer than ten accessions.

23 to two groups depending on the origin of the accessions.

24 nts for all traits vs. the cultivated pepino accessions.

25 ating entirely different haplotypes in these accessions.

26 nce/absence variants between 216 Arabidopsis accessions.

27 of wild photoperiodic and modern day-neutral accessions.

28 can and Andean genotypes, for a total of 577 accessions.

29 isting of 203 domesticated and 435 wild rice accessions.

30 MAFs) > 0.05 were found among the 512 tested accessions.

31 zation response in 216 wild and domesticated accessions.

32 eristics of the fruit and seeds of different accessions.

33 RNA gene sequence variation within and among accessions.

34 pport for strong synteny between bread wheat accessions.

35 nd partial ones, were delineated from all 19 accessions.

36 oil/dry matter contents among the different accessions.

37 n the expression level for host genes across accessions.

38 egulated in leaves from non-alkene-producing accessions.

39 te forms and their distribution varied among accessions.

40 total leaf O-AS was found among the natural accessions.

41 t of the edible pulp of six Mammea americana accessions.

42 T89A2 enzyme properties in the Col-0 and C24 accessions.

43 -populations plus some admixtures in the 672 accessions.

44 lti-labeled species tree for a subset of our accessions.

45 d comparing MITEs in 19 Arabidopsis thaliana accessions.

46 ess is widespread among Arabidopsis thaliana accessions(2).

47 bility of fruit characteristics of different accessions; 2) the effects of centrifugation and microwa

48 more pronounced gluconeogenesis in tolerant accessions, a response that included stress-induced alte

49 was crossed with the vernalization-dependent accession ABR6.

50 Purslane accessions Ac4, Ac5, Ac6 and Ac8 possessed potentials fo

51 e sequence for Ae. tauschii ssp. strangulata accession AL8/78, which is closely related to the wheat

52 tories for nucleotide sequences, they do not accession all the metadata required for ecological or ev

53 tibody-positive and chronic HCV infection at accession among younger recently deployed military perso

54 HCV infection status at the time of accession and following deployment was determined by eva

55 and the epidemiology of HCV in the applicant/accession and overall force populations.

56 The database provides an assembly accession and version to unambiguously identify the set

57 data provided to CEBS are manually curated, accessioned and subject to quality assurance review prio

58 .ncbi.nlm.nih.gov/assembly/) provides stable accessioning and data tracking for genome assembly data.

59 Here, we used 219 soybean accessions and 152 recombinant inbred lines genotyped wi

60 orphisms to investigate 417 wild common bean accessions and a representative sample of 160 domesticat

61 ngs are the evolutionarily oldest across all accessions and are the most conserved in amino acid sequ

62 Experiments with natural accessions and crosses between high- and low-O-AS access

63 rin.) Griseb. and P. maximum Jacq. germplasm accessions and cultivars.

64 found up to 74-fold fitness variation across accessions and environments.

65 acterized natural variation in O-AS among 26 accessions and examined their influence on two native fu

66 ion for INDICA/INDICA-like and JAPONICA rice accessions and find preliminary evidence for the benefic

67 g phenotypic variations among these F. vesca accessions and for mapping new mutations generated throu

68 We analyzed 349 Arabidopsis accessions and found extensive variation and high herita

69 type map through deep sequencing 241 diverse accessions and identified >28 million segregating varian

70 hirsutum and G. barbadense and between wild accessions and modern cultivars.

71 luorescent crossover reporters to 32 diverse accessions and observed hybrids with significantly highe

72 sions, including cultivated and wild cassava accessions and related species such as Ceara or India ru

73 form deep genome resequencing of 117 diverse accessions and reveal comprehensive models of apple orig

74 that rDNA cluster-usage varies greatly among accessions and that rDNA cluster-specific expression and

75 equencing and RNA-sequencing of 41 groundnut accessions and wild diploid ancestors, a total of 58,233

76 ing on average 600 to 1100g depending on the accession, and spherical to oblate-shaped.

77 correlated with lateral root development in accessions, and cyp79b2 cyp79b3 double mutants developed

78 psis thaliana) Columbia-0/Landsberg erecta-0 accessions, and S. lycopersicum/S. pennellii/Solanum tub

79 ll-characterized Utah 30th generation inbred accession--and grew 183 plants in the glasshouse for sta

80 f Arabidopsis, evaluate whether all of these accessions are defective in ACC2, and characterize genot

81 ealed that the clustering pattern of diverse accessions are in agreement with capsaicin content (CA)

82 Though all three accessions are inbred seven generations, each accession

83 t tolerance was conducted on 672 diverse pea accessions at three locations in Northern China in three

84 selective constraint, but among A. thaliana accessions, AtDDF2 has a higher level of nonsynonymous n

85 es can be inferred with high accuracy across accessions based on the expression profile of 283 genes.

86 ing accession Bd21 and the delayed-flowering accession Bd1-1 were grown in a variety of environmental

87 ved from a cross between the rapid-flowering accession Bd21 and the delayed-flowering accession Bd1-1

88 esticated grass, the reference B. distachyon accession Bd21 was crossed with the vernalization-depend

89 In most Brachypodium accessions BdODDSOC2 is down-regulated by cold, and in o

90 nd antioxidant activities of fourteen Thymus accessions belonging to ten species were evaluated.

91 to that of the reference S. pennellii LA716 accession but has a high error rate and was rich in homo

92 everity and extent of silencing in different accessions, but two correlations could be made.

93 es of chronic HCV cases from a single year's accession cohort was $9.3 million.

94 In contrast, in accession Col-0, HISN6A is essential because HISN6B is n

95 Two accessions, Col-0 and Bur-0, and a recombinant inbred li

96 ysis revealed that the majority (79%) of tea accessions collected in Africa belong to Indian Assam te

97 vP5CS1 among 287 barley (Hordeum vulgare L.) accessions collected worldwide, with 13 distinct haploty

98 n Arabidopsis (Arabidopsis thaliana) natural accession collection grown under common favorable condit

99 We found that grape accessions contained 5.2% more deleterious variants than

100 alt and Pi starvation within 330 Arabidopsis accessions could be grouped into four response patterns.

101 ivity phenotypes of the Arabidopsis thaliana accession Cvi-0 to a single amino acid substitution in M

102 In Arabidopsis thaliana accession Cvi-0, one of the two copies of a duplicated h

103 me assembly and annotation of two Sri Lankan accessions (denoted herein as CPP34 [PI 491423] and CPP3

104 vels are mainly determined by genetic (i.e., accession dependent) or physiological (i.e., time depend

105 onic microbial digestion of PFSP leads to an accession-dependent pattern for anthocyanin bioaccessibi

106 tion time-of-flight mass spectrometry showed accession-dependent variations in anthocyanin release an

107 on did not significantly influence liking of accessions, despite PAV/PAV 'supertasters' scoring highe

108 ing eight Arabidopsis (Arabidopsis thaliana) accessions differing significantly in sensitivity to sub

109 All tomato accessions displayed significant differences regarding m

110 nearby genes, and a major fraction of inter-accession DNA methylation differences were associated wi

111 rom whole-genome resequencing of 292 Cajanus accessions encompassing breeding lines, landraces and wi

112 of common epialleles in natural Arabidopsis accessions, epigenetic recombinant inbred lines (epiRILs

113 licing are included among the most sensitive accessions examined.

114 taxa associated with 63 crops, no germplasm accessions exist, and a further 257 (23.9%) are represen

115 levels among nearly 300 Arabidopsis thaliana accessions exposed to the same low water-potential sever

116 We found that all three accessions express HT proteins, which previously had bee

117 ese results highlight the utility of natural accessions for integrating ecoevolutionary and genetic r

118 ilized for selection of the most appropriate accessions for such approaches.

119 in each of three sets of 50 mostly polyploid accessions, for four loci, in three PacBio runs (one run

120 A germplasm set of twenty-five grapevine accessions, forming eleven groups of possible berry skin

121 We analysed Hordeum spontaneum accessions from 21 different locations to understand the

122 We highlight the diversity of E. sativa accessions from a sensory and phytochemical standpoint,

123 ine-derived glucosinolates using A. thaliana accessions from across Europe.

124 nalysis of the genetic diversity of eighteen accessions from different locations in Nigeria was inves

125 rkers in genetic diversity of V. unguiculata accessions from different regions in Nigeria.

126 markers showed highest genetic diversity in accessions from Ebonyi.

127 of 155 weedy and 76 locally cultivated rice accessions from four representative regions in China tha

128 Broadly, accessions from north and south of Mexico showed conside

129 ition and the genetic variation of 23 aibika accessions from the collection at the National Agricultu

130 ons was developed, mainly involving landrace accessions from the core set of the Watkins hexaploid wh

131 onveniently, and demonstrate its efficacy on accessions from the fern family Cystopteridaceae.

132 visible marker to discriminate asymptomatic accessions from those showing resistance.

133 enotyping to characterize VIR's 147 chickpea accessions from Turkey and Ethiopia, representing chickp

134 bis samples 36 from Iranian locations and 26 accessions from two germplasm collections.

135 cessions of cultivated pepino as well as six accessions from wild relatives were evaluated for conten

136 s in the micronutrient concentrations of the accessions from year to year and accessions that had the

137 TD) for a specific plant species, variety or accession, from all available sequence data, will immedi

138 In the Columbia accession, functional alleles of most of these genes opp

139 Of these, two accessions had a surface-based mechanism of resistance,

140 f shared and distinct SNPs among these three accessions have revealed that 'Rugen' and 'Yellow Wonder

141 d and compared the genomes of three F. vesca accessions: 'Hawaii 4', 'Rugen', and 'Yellow Wonder'.

142 sis genomes revealed more than 170 inversion accessions in Europe and North America.

143 The 7.4 million plant accessions in gene banks are largely underutilized due t

144 y of the 'mobilome' vary extensively between accessions in relation to climate and genetic factors.

145 ral variation among 347 Arabidopsis thaliana accessions in root system architecture (RSA) and identif

146 WCS417r, there was a large variation between accessions in the increase in shoot fresh weight, the ex

147 Slavice and Columbia are accessions in which plant regeneration is uncharacterize

148 -regulated by cold, and in one of the winter accessions in which this down-regulation was evident, Bd

149 dopsis thaliana) plants belonging to the C24 accession, in which expression of SRK and SCR had been s

150 ) glycosides in distinct Arabidopsis natural accessions, including Col-0 and C24.

151 o sequence a global collection of 58 Manihot accessions, including cultivated and wild cassava access

152 We resequence the genomes of 147 cotton accessions, including diverse wild relatives, landraces,

153 A total of 1324 apple accessions, including the 92 progenies of two mapping po

154 with phenotypic variation in the S. arcanum accessions indicating their potential role in EB.

155 tion of mini satellite region DNA placed the accessions into five groups.

156 Both ISSR and SCoT markers resolved the accessions into five major clusters based on dendrogram

157 w grain Cu was found in 67 of the 1,367 rice accessions investigated.

158 om the physiological characterization of the accessions is a reduced Cd accumulation in Bur-0.

159 The proportion of polymorphisms shared among accessions is a strong predictor of phenotypic resemblan

160 cant variation in folate levels among tomato accessions, little polymorphism was found in folate bios

161 iables are partitioned across rice germplasm accessions may be key to identifying potentially useful

162 Among different accessions, metabolite-RN correlations were maintained w

163 we demonstrate that sRNAs from shoots of one accession move across a graft union and target DNA methy

164 ikingly, one pathogenic mutation T233A (NCBI accession no.

165 tional Center for Biotechnology Information (accession no: GSE70469).

166 R/ORF74 mRNA, terminating at 130873 (GenBank accession number GQ994935), resulting in an approximatel

167 ) and deposited the sequence in GenBank with accession number KF898354.

168 h for relevant genomic data using a keyword, accession number of meta-data tag.

169 ariant-condition combination and assigned an accession number prefixed with RCV.

170 Each submitted interpretation is assigned an accession number prefixed with SCV.

171 Raw data is available at NCBI's SRA with accession number PRJNA271645.

172 ers to reference glycan structures simply by accession number, as opposed to by chemical structure, w

173 ched using multiple inputs such as ZFIN IDs, accession number, UniGene ID, or gene symbols from zebra

174 Transcript profiling: ArrayExpress accession number: E-MTAB-3278.

175 particular MYOC mutation, Gln368Stop (dbSNP accession number: rs74315329), is the most common geneti

176 pository for glycan structures, where unique accession numbers are assigned to every identified glyca

177 GenBank staff assign accession numbers upon data receipt.

178 the Gene Expression Omnibus public database (accession numbers: GSE32597 and GSE73396).

179 from root, leaf, spathe, and spadix from an accession of A. amnicola was assembled, resulting in 28,

180 ssemblies for a wilt-resistant South African accession of Mentha longifolia (L.) Huds., a diploid spe

181 Recently, a vernalisation-requiring accession of the Rosaceae model woodland strawberry (Fra

182 to root volatiles of three cultivars and one accession of the solanaceous plant, Capsicum annum again

183 ad length of 11,979 bp for a self-compatible accession of the wild tomato species Solanum pennellii W

184 contrast, lack of coalescence in conspecific accessions of abundant and often widespread species is m

185 Natural accessions of Arabidopsis (Arabidopsis thaliana) differ

186 ive manner by studying the responses of 1041 accessions of Arabidopsis thaliana to the foliar pathoge

187 scribe an expanded search for hypersensitive accessions of Arabidopsis, evaluate whether all of these

188 nes and three plastid DNA fragments from 109 accessions of Avena L.

189 obiota associated with wild and domesticated accessions of barley (Hordeum vulgare).

190 Pepino (Solanum muricatum) fruits from 15 accessions of cultivated pepino as well as six accession

191 d structural variation in the genomes of six accessions of cultivated potato (Solanum tuberosum L.),

192 We selected seeds from 43 accessions of different populations from the southwester

193 Seven accessions of Eruca sativa ("salad rocket") were subject

194 Here, we report on a screen of natural accessions of poplar (Populus trichocarpa), revealing th

195 Additionally, we sequenced 100 accessions of primitive, wild and cultivated citrus.

196 and fatty acid composition in forty Iranian accessions of Prunus scoparia L.

197 sory and chemical analyses were performed on accessions of rocket (Eruca sativa) to determine phytoch

198 d in the antioxidant response in forty-three accessions of sweet cherry fruits from Campania region.

199 ing 150 bp PE reads from a GBS library of 48 accessions of tetraploid kiwiberry (Actinidia arguta), G

200 We grew 35 natural accessions of the grass Brachypodium distachyon in four

201 Analysis of the 19 parental accessions of the multiparent advanced generation interc

202 hances leaf size in a broad range of natural accessions of this species, indicating a highly conserve

203 Screening of 327 accessions of wheat A genome progenitors using the three

204 and 219 G. barbadense cultivars and landrace accessions of widespread origin.

205 e to endogenous characteristics making these accessions particularly interesting for breeding program

206 Seeds of a primitive accession (PI251246) of lettuce exhibited high-temperatu

207 One accession, Pla-1, lacked both symptoms and silencing, an

208 .960 and in the ascending colonic vessel for accession PM09.812, corresponding to the appearance of a

209 appeared in the ascending colonic vessel for accession PM09.812.

210 estinal vessel relative to other vessels for accession PM09.960 whereas more species appeared in the

211 d, milled purple-fleshed sweet potato (PFSP) accessions, PM09.812 and PM09.960, underwent digestion i

212 ing efforts since only 4% of the African tea accessions possessed this genotype.

213 n the northern Norwegian woodland strawberry accession postpones flower induction until the spring, a

214 ned assembly based on 804,757 reads from two accessions produced 16,115 contigs with an N50 of 889 bp

215 between MITEs and homologous genes across 19 accessions provided a fine source for analyzing MITE tra

216 ic fatty acids showed high variability among accessions, ranging from 232.4 to 359.6g/kg oil and from

217 ytoplasmic substitutions among eight natural accessions reflecting within-species genetic diversity.

218 attracted to the three cultivars than to the accession, relative to controls.

219 We sequenced the genomes of 29 accessions representing 12 Phaseolus species.

220 gest taxon sampling, a total of 835 terminal accessions representing 80% of the genera, and encompass

221 l species sampling and inclusion of multiple accessions representing individual species in phylogenie

222 enome(6) and compared it with genomes of 109 accessions representing O. glaberrima diversity across W

223 We used a collection of 177 accessions representing the two C. melo subspecies and 1

224 199 Brassica rapa and 119 Brassica oleracea accessions representing various morphotypes and identifi

225 differentiation in resistant and susceptible accessions, respectively.

226 of these amino acid residues in more natural accessions revealed a strong correlation between the ami

227 enomic diversity among wild and domesticated accessions revealed genomic regions bearing the signatur

228 sions and crosses between high- and low-O-AS accessions revealed that total O-AS levels were associat

229 equencing of 120 cultivated and wild spinach accessions reveals more than 420 K variants.

230 Within an accession, RN correlated strongly with stored carbon sub

231 we report the RNA sequencing of 240 lettuce accessions sampled from the major horticultural types an

232 Each accession showed differences in proportions/types of vol

233 Accessions showed high variability in fruit weight and s

234 Fourteen accessions showed resistance to infection by Pst DC3000.

235 from a diversity panel of present-day barley accessions showed the close affinity of ancient samples

236 ity was measured in 67 soybean (Glycine max) accessions showing large variation in leaf Chl.

237 tein were associated with climate factors at accession sites of origin, indicating its potential invo

238 e report the metabolic profile of 300 tomato accessions (Solanum lycopersicum and related wild specie

239 Accession-specific differences suggested a more efficien

240 reads data are available under the NCBI SRA accession SRP066985.

241 ccessions are inbred seven generations, each accession still possesses extensive heterozygosity, high

242 y, these patterns were not identical for all accessions studied, and multiple strategies to integrate

243 ed only partially to the seeds in 5 of the 6 accessions studied, while the last one exhibited full ad

244 sequences of an additional 36 diverse cowpea accessions supported the development of a genotyping ass

245 The natural variation of C. reinhardtii accessions supports the hypothesis that, despite abundan

246 sequencing data for 211 Arabidopsis thaliana accessions taken from across the globe, we identify thou

247 Although virtually all Arabidopsis accessions tested responded positively to WCS417r, there

248 ILLING mutant abp1-5 We employed Coimbra, an accession that exhibits an amino acid exchange in the au

249 ions of the accessions from year to year and accessions that had the highest concentration of a parti

250 Solanum chmielewskii, was found to have many accessions that recognize only AvrPtoB.

251 translocation classes were found in several accessions, the most frequent one being the well-known T

252 ivated species has been studied with limited accessions, their population structure and genetic varia

253 s of genomes of diverse Arabidopsis thaliana accessions, there is so far only one full-length assembl

254 ral bud, and root of 19 Arabidopsis thaliana accessions to examine the age and sequence divergence of

255 xists in the available genetic repertoire of accessions to handle the combination of stresses.

256 is population by backcrossing 25 wild barley accessions to the six-rowed malting barley cultivar Rasm

257 y, we evaluated eleven globally diverse rice accessions under controlled conditions at two carbon dio

258 lied on resistant and susceptible S. arcanum accessions upon A. solani inoculation to unravel metabol

259 ored across a genetic diversity panel of 383 accessions using a transcriptome reference comprising 11

260 sity of Vigna unguiculata (L.) Walp (cowpea) accessions using informative molecular markers is impera

261 s estimated in tomato (Solanum lycopersicum) accessions using microbiological assay (MA) and by LC-MS

262 ted in 18 Arabidopsis (Arabidopsis thaliana) accessions using PHENOPSIS, an automated phenotyping pla

263 tion study on a set of 185 U.S. winter wheat accessions using single nucleotide polymorphism (SNP) ma

264 Empirical experiments with a 200-accession validation set chosen from the reference set c

265 ng page for submitters, a shift toward using accession.version identifiers rather than GI numbers, a

266 8 divisions, and GenBank staff assign unique accession.version identifiers upon data receipt.

267 The total phenolic content of each accession was determined using Folin-Ciocalteu assay, ra

268 The sustained common Cd response of the two accessions was dominated by processes implicated in plan

269 A subset of these accessions was evaluated in consumer panels, identifying

270 tion panel of 461 diverse plant-introduction accessions was evaluated using an end-to-end phenotyping

271 The Pto ortholog from one of these accessions was responsible for recognition of AvrPtoB an

272 A set of 299 accessions was selected as the training set to represent

273 A set of 384 accessions was used to test the array resulting in 54 56

274 expression in a diverse set of Brachypodium accessions, we find that it is a good predictor of the v

275 behavior on 350 natural Arabidopsis thaliana accessions, we identified the small heat shock-like SIEV

276 Using natural Arabidopsis thaliana accessions, we identified two major recombination quanti

277 footprinting in eudicots and in Arabidopsis accessions, we identify a cis-regulatory module, Regulat

278 lly restricted panel of Arabidopsis thaliana accessions, we identify allelic variation at the FRO2 lo

279 by analyzing the sequence of the respective accessions, we were able to estimate whether transcript

280 Seven accessions were assessed for changes in headspace VOCs o

281 First, a set of 962 biomass sorghum accessions were chosen as a reference set by germplasm c

282 Several-fold differences among accessions were found for most traits.

283 However, a large percentage of landrace accessions were genetically very close, although belonge

284 Sixteen accessions were identified as the most winter-hardy for

285 Several accessions were identified where sensitivity could not b

286 arole (Cichorium endivia L. var. latifolium) accessions were investigated for their sensory character

287 tion panel of 466 diverse plant introduction accessions were phenotyped in multiple field and control

288 s of 25 different populations from worldwide accessions were quantified and compared with each other.

289 The accessions were selected based on the expression levels

290 More than 500 diverse soybean accessions were sequenced using specific-locus amplified

291 Relatively old mungbean accessions were superior in protein, calcium (Ca), iron

292 To this end, 302 Arabidopsis accessions were tested for root architecture characteris

293 ld barley parents were selected from the 318 accession Wild Barley Diversity Collection (WBDC) to max

294 Our results highlight accessions with high antioxidant metabolites contents bu

295 momeric ACCase variants identified among 855 accessions with sequenced genomes.

296 Accessions with similar responses at these two levels we

297 y 49 panicle phenotypes in 242 tropical rice accessions with the imaging platform PANorama.

298 activities of MITEs among different ecotype accessions within a species, we conducted a genome-wide

299 typic correlations, we collected 809 soybean accessions worldwide and phenotyped them for two years a

300 sis of the vernalisation requirement in this accession would advance the development of strawberry cu