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1 es of alphabetic sequences with one-mutation adjacency.
2 ined using arbitrary rules such as requiring adjacency, a minimum number of genes, a fixed window siz
5 that using the abstract shapes, which retain adjacency and nesting of structural features but disrega
8 of the reference genome into intervals; (ii) adjacencies between these intervals in the cancer genome
9 of in-frame stop codons within a window, the adjacency between peptides, and duplicate peptide matche
12 pe of alphabetic sequences with one-mutation adjacency, chosen from a larger class of landscapes, no
13 characteristics and clustered at the primary adjacency community unit, defined as the index block, pl
16 ethods' performance were assessed, including adjacency discovery quality, edge orientation accuracy,
17 f-the-art software pre-alignment techniques, Adjacency Filter and Shifted Hamming Distance (SHD), res
20 we compared 6 models of population movement (adjacency, gravity, radiation, radiation based on popula
22 atic mutations in many tumors, and the novel adjacencies (i.e. breakpoints) resulting from these rear
27 es of protein families, domain fusions, gene adjacency in genomes, and expression patterns, these met
30 s filled rows and columns of these networks' adjacency matrices tend to be subsets of the fuller rows
31 cer uptake was calculated and state specific adjacency matrices were constructed based on regional co
32 sensitivity to source biases in interaction/adjacency matrices: errors arising from systematic error
33 ransforms a MEDLINE record into a mixture of adjacency matrices; by performing a random walkover the
34 currence to construct a filtered, normalized adjacency matrix and use the Markov Clustering Algorithm
36 semicircle law, whereas the spectrum of the adjacency matrix of a power-law graph obeys the power la
38 ator is much better-behaved than that of the adjacency matrix or other commonly used matrices, mainta
39 rned by the maximum eigenvalue of a modified adjacency matrix, and we test this result by comparison
40 udy different approaches for transforming an adjacency matrix, e.g. using the topological overlap mea
47 xtends the I-sites library by describing the adjacencies of different sequence-structure motifs as ob
48 Near these fibroblastic foci, an abnormal adjacency of alveolar walls was seen, suggesting alveola
50 invasion of the sublingual space, and direct adjacency of the tumor to the enhanced lingual vasculatu
52 cencies than predicted by the PAPR (pentagon-adjacency penalty rule), (iii) the changes in regioisome
54 lel and anti- parallel beta strands, spatial adjacencies relating neighbouring SSEs, and the chiralit
55 canonical anatomy, such as connectedness and adjacency relations between anatomical parts, their shap
57 candidate motifs, we calculate corresponding adjacency scores, and then list descending-order motifs.
58 imilar FRET profiles when probed for subunit adjacency, suggesting similar underlying subunit arrange
60 ii) the appearance of more pentagon-pentagon adjacencies than predicted by the PAPR (pentagon-adjacen
61 lens subdomain fate maps, which reveal novel adjacencies that might determine corresponding developme
63 P=.01; 37.1% per year vs 25.6% per year) and adjacency to pleural surface (P=.05; 38.9% per year vs 3
65 does not require primary nucleotide sequence adjacency to the 5'ppp, suggesting that RIG-I recognizes
66 thermorubin and the ribosome, as well as its adjacency to the observed binding sites of three other a
67 tigated include alpha- and beta-methylation, adjacency to unsaturated functionality (allyl, benzyl, p
68 er, the assignment of each rearrangement, or adjacency, to an individual cancer genome in the mixture
69 O group in RCCO* intermediates, because such adjacency weakens C-C bonds, which also leads to much lo
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