ライフサイエンスコーパス: align to

1 y. yoelii contiguous DNA sequences (contigs) aligned to 14 P. falciparum chromosomes reveals marked c

2 d by an almost continuous contig of 736 YACs aligned to 597 contigs of cosmids.

3 , while the expressed sequence tag sequences aligned to 73% of the nucleotides.

4 The available maize GSSs aligned to 75% of the FLC nucleotides used to perform se

5 h many nucleotide substitutions difficult to align to a reference sequence with existing tools, preve

6 Manually segmented prostate capsules were aligned to a BCR (-) template for statistical comparison

7 To build DMDM, all human proteins were aligned to a database of conserved protein domains using

8 re, we show that short sequence reads can be aligned to a genome assembly containing a single rDNA re

9 All sequences were pairwise-aligned to a model sequence using the Hidden Markov Mode

10 When there are many transcripts aligned to a particular locus, local variation of the cl

11 S100 calcium-binding protein A4 (S100A4) was aligned to a principal axis associated with metastasis.

12 z makes it easy to display features as boxes aligned to a protein sequence with zooming functionality

13 etween the two subunits with its 2-fold axis aligned to a pseudo 2-fold axis of the protein.

14 zing variants from a de novo genome assembly aligned to a reference genome.

15 ce reads from NGS platforms, which have been aligned to a reference sequence.

16 lumn yields a higher substitution score when aligned to a related than to an unrelated column.

17 The reconstructed time-framed images were aligned to a selected reference frame using either EMT o

18 axes of these nonplanar surfaces were often aligned to a set of three color directions that were pre

19 The resulting DNA sequences can be aligned to a single family with two conserved stretches

20 teins of 200 residues or smaller, 93% can be aligned to a single template structure (with average seq

21 Each dataset contains a query RNA aligned to a target RNA (of the same family) embedded in

22 ed reads generated by high-quality libraries aligned to a transcript, but approximately 70% of them a

23 ng from a sequencing run are first "mapped" (aligned) to a reference sequence to infer the read from

24 e mechanistic models that assume nucleotides aligning to a given reference position are sampled from

25 None of the prostate cancer risk variants aligns to a known gene or alters the coding sequence of

26 In a typical run, a query structure is aligned to all structures in one of several databases of

27 ose-binding protein (MBP) are proposed to be aligned to allow residues in both domains to interact si

28 ibraries being the most highly enriched (31% align to an EST contig), while the HMPR clones exhibited

29 sed single cells and microparticles are self-aligned to and retained without light illumination.

30 ddition, at least 30% of the 454-ESTs do not align to any of the approximately 648,000 extant maize E

31 Additionally because users can align to arbitrary template alignments, a feature not av

32 aled that two glutamic acids in amadoriase I align to Arg(112) and Arg(114) in amadoriase II.

33 equirement so that a long read region can be aligned to at least one contig region, including its tru

34 Sequences aligning to Balamuthia mandrillaris ribosomal RNA genes

35 es at the catalytic cleft are more optimally aligned to bind ATP and mediate phosphoryl transfer.

36 Although 34 of 36 lines aligned to bladder tumors rather than other histologies,

37 ble nuclei and determine the transition from aligning to buckling.

38 These DNA segments need to be aligned to build a PSSM.

39 C(pos)/Ly6C(neg) subsets could not have been aligned to canonical M1/M2 profiles.

40 Results of cosinor analysis of group data aligned to CBT circadian minimum revealed significant ci

41 cleotide sequence of the human DIPP cDNA was aligned to chromosome 6; the candidate gene contains at

42 nd that gene expression profiles of 17 lines aligning to colorectal tumors and selected based on thei

43 Scan data were re-aligned to correct for movement artefacts and cross-refe

44 ctive of other genomic CTCF sites and can be aligned to create a functional consensus.

45 ctural reference state of two protofilaments aligned to create the "agitated" protofibril as determin

46 rm an a--c crosslink, the c subunit properly aligned to crosslink to subunit a was found to contain v

47 o allows the analysis of data that have been aligned to custom genomes rather than to a standard refe

48 remove RNA left after polymerization, the RT aligns to cut 18 nucleotides in from the 5' RNA end.

49 Furthermore, when these compounds are aligned to delta 9-THC according to the proposed pharmac

50 d, the redundant copies within each read are aligned to derive a consensus sequence of their initial

51 env sequences were aligned to determine intra- and intermonkey variation ov

52 Moreover, these top hit proteins are aligned to different parts of the target protein, so tha

53 f ecosystems when global and local processes align to drive intense heating, with devastating consequ

54 erphase microtubule behavior is more closely aligned to dynein than EB1 or CLIP170.

55 o its parent protein family and subsequently aligned to each other by transferring the parent domain

56 e chromosomal DNA sequence duplications were aligned to each other by using MUMmer.

57 The new probe sequence is then aligned to each target protein structure in the library

58 Locations of maximum PN concentrations were aligned to eastern, downwind jet trajectories during pre

59 e POTRA and barrel domains must be precisely aligned to ensure efficient OMP insertion.

60 efficiently separated by electronic type and aligned to ensure optimal and reproducible electronic pr

61 cessed, it is important that the spectra are aligned to ensure that the same protein intensities are

62 In multiciliated cells, BB orientation aligns to ensure coherent ciliary beating, but the mecha

63 embled genomic islands (MAGIs) that had been aligned to ESTs.

64 anized inputs from the retina and V1 must be aligned to facilitate integration.

65 ch by accurate SNP predictions in human ESTs aligned to finished and working-draft quality genomic se

66 Trial records were aligned to forearm rotation onset in order to compare th

67 At high protein concentrations, NFs align to form a nematic liquid crystalline gel with a we

68 rows that subsequently rotate 90 degrees and align to form a single longitudinal row.

69 of rP172, these nanoparticles were found to align to form linear needle-like particles that subseque

70 rials, but not the rectangle-based material, align to form simple one-dimensional channels.

71 with polyethylenimine (PEI) and SWCNTs were aligned to form a 2 x 2 junction array, functionalized w

72 tissues raising the question of how they are aligned to form a functional eye.

73 n cells and neurons in visual cortex must be aligned to form a visuotopic map, but the basic mechanis

74 ic phase of graphene oxide (GO) can be shear aligned to form highly ordered, continuous, thin films o

75 Three of the four mutant PrPs aligned to form intermolecular beta-sheets.

76 ral elements of the kinase domain C-tail are aligned to form novel interactions to the nucleotide and

77 Compared to Z-discs that are initially aligned to form shorter periodic dots and expanded longi

78 ses of neighboring astrocytes were spatially aligned, to form the apertures through which the bundles

79 ompact with the four helices in each subunit aligning to form a unicornate-type four-helix bundle.

80 notations, no matter the granularity, can be aligned to genomic sequences and therefore annotated by

81 ns of mRNAs using 3'-ESTs with poly(A) tails aligned to genomic sequences.

82 When MS VH sequences were aligned to germline segments, about 60% of different VH

83 These sequences are multiply and locally aligned to give an anchor motif from which further chara

84 quence quality is such that 88% of the reads align to human reference sequences, allowing us to compu

85 which modules composed of tandem repeats are aligned to identify repeat-specific features.

86 as replaced with three stents telescopically aligned to improve anchoring.

87 ts with spatial and temporal expression well aligned to interventional requirements, pose difficultie

88 he most ancient duckweed genome, needs to be aligned to its chromosomes as a reference and prerequisi

89 arget sizes, more segment angle variance was aligned to kinematic deviations with the goal of maintai

90 ptide sequences from MAGE-1, 2, 3, 4a, and 6 aligned to MAGE-12:170-178 were not recognized by F001-T

91 agnetism, graphene flakes can respond and be aligned to magnetic field like a ferromagnetic material.

92 We also use TM-align to match the models predicted by TASSER for solved

93 eudogenes are of processed origin and can be aligned to match the entire coding region of the functio

94 the redox centres of the three proteins are aligned to maximize the efficiency of electron transfer

95 by-step guide suitable for printing proteins aligned to micron-sized sensors and subsequent integrati

96 : GD6.5-14.5; 3: GD14.5-16.5; 4: GD0.5-16.5) aligning to milestones during human development.

97 Gate electrodes were self-aligned to minimize overlap capacitance by inkjet printi

98 Fourth, sequences aligned to miRNAs with mismatches are remapped to a refe

99 exact match to at least one RNA-Seq read; 15 aligned to more than 100 RNA-Seq reads.

100 tion timing profiles were significantly more aligned to mouse epiblast-derived stem cells (mEpiSCs) t

101 he continuation phase for the beta-band when aligned to movements, and a bias toward the synchronizat

102 at a sizable fraction of the fragments/reads align to multiple locations of the genome.

103 , a considerable fraction of the short reads align to multiple locations on the reference genome (mul

104 ity is also high: <7% of the rat contigs are aligned to multiple places in human, and 97% of all alig

105 Sequences aligning to multiple Cache Valley virus genes were ident

106 were stronger when the target frequency was aligned to neuronal best frequency.

107 f the molecules, which changes from prolate (aligned) to oblate (anti-aligned) in 300 fs.

108 lly the sequences from PDB and UniProtKB are aligned to obtain a residue-level mapping.

109 ns, the correct/incorrect mean phases became aligned to one another before they diverged and coded fo

110 e manner in which the stimulus waveforms are aligned to one another during the calculations.

111 t, where individual proteins in networks are aligned to one another, are performed to achieve higher

112 sequences during retrieval, so that they are aligned to one another.

113 ntifies how well one sequence residue can be aligned to one template residue based on context-specifi

114 realigned from a representation that was box-aligned to one that was room-aligned.

115 tter of one sequence is constrained to being aligned to only one letter of the other.

116 When in metaphase, the duplicated cores align to opposite sides of the kinetochores in a linear

117 nd the alignment must change from vertically aligned to parallel to the slab.

118 ch subthalamic and pallidal populations were aligned to phases that left beta-amplitude unchanged wit

119 In cultured cells, this capacity is tightly aligned to phosphorylation of ShcD CH1 region tyrosine m

120 and enables identification of chicken clones aligned to positions in other sequenced genomes.

121 or global sequence changes without having to align to previously known genomes.

122 ucratic systems but will remain most closely aligned to primary care as a concept.

123 airs detected from multiple samples are then aligned to produce a CSV file that contains the metaboli

124 ructures, which were similarly minimized and aligned to produce the 3D-QSAR models.

125 If federal and state policies were aligned to promote prairie strips, the practice would be

126 Ideally, complete domains are aligned to protein subsequences, in a 'semi-global align

127 contigs were plotted on the rice genome and aligned to QTL likelihood intervals for ratooning and rh

128 ventricular cardiomyocytes are strategically aligned to reproduce key electrophysiological features o

129 Ninety percent of mycoplasma-mapped reads aligned to ribosomal RNA.

130 ach individual, the number of mappable reads aligned to RNA references was ~5.4 million including miR

131 l by averaging the time course of the noise, aligned to saccade initiation, across all trials with sa

132 itiation factor (eIF)2alpha kinase (HRI) was aligned to sequences in the NCBI data base using ENTREZ

133 Sequences were aligned to SILVA database and Clostridiales and Erysipel

134 neous treatment with BRAF and MEK inhibitors aligned to standard-of-care combination therapy, suggest

135 d to known folds and 58% of the residues are aligned to structures.

136 ment, where whole subgraph of one network is aligned to subgraph of another, and protein-to-protein a

137 The structure of the Orsay S domain is best aligned to T = 3 plant RNA viruses but exhibits substant

138 was highly specific; 90% of sequencing reads aligned to targeted loci.

139 e of this apparent sensitisation was closely aligned to that of ATP turnover, which was lower in the

140 ription start point of the proximal promoter aligns to that of mouse promoter P3 and lies within a co

141 significantly higher percentage of sequences align to the 500-bp segment upstream of the transcriptio

142 n the active site remain immobile and do not align to the changes in the substrate electric field.

143 estigated an average of 40% of reads fail to align to the corresponding genome, with some datasets ha

144 replicates, and the percentage of reads that align to the genome as well as exons.

145 cessive ('hyper') editing that do not easily align to the genome.

146 mportant role in how molecular energy levels align to the graphene Dirac point, and may significantly

147 HIV-1 matrix protein trimer unit structures align to the His-HIVCA trimer units such that residues p

148 Two of these regions align to the putative ATP-binding domain and catalytic s

149 These have been aligned to the 79,000 gene models predicted from the soy

150 that peak discrimination performance was not aligned to the adaptor but to test amplitudes 3-9 mum hi

151 the beta(1) integrin, residues 786-797, were aligned to the available PTB-peptide structures to gener

152 arge tilt angle are the hydrophilic residues aligned to the channel axis.

153 sive hydrogel with cell-mediated degradation aligned to the chondrogenic differentiation of human mes

154 TBB were aligned to the closest TBB surveillance schedule.

155 This sequence was assembled and aligned to the Columbia ecotype sequence produced by the

156 ous mammalian P450s have been identified and aligned to the corresponding residues in the substrate-h

157 ts showed that all of the peptides sequenced aligned to the deduced amino acid sequence of either chi

158 al fibers are integrated into the device and aligned to the detection volume to improve the automatio

159 ructure, including novel spatial differences aligned to the developing chambers.

160 trol techniques has always been very closely aligned to the development of dentistry.

161 of the border tissue; this latter structure aligned to the disc margin.

162 In 23 eyes, the NCO aligned to the disc margin.

163 movements, head direction cells must be kept aligned to the external world by sensory inputs, which a

164 When strain in a coordinate system aligned to the fibers is estimated, cross-fiber shorteni

165 ngation and formation of actin stress fibers aligned to the flow direction.

166 Reads from the initial population, when aligned to the full-length viral sequence (11,161 nucleo

167 SNPs found to be associated with colour, 35% aligned to the genome and 10% to the transcriptome.

168 The resulting ambiguity sequence is aligned to the genome, identifying one template sequence

169 transcript assembly from expressed sequences aligned to the genome.

170 a transcript, but approximately 70% of them aligned to the genome.

171 GBD contains a collection of annotation data aligned to the genomic sequence.

172 s are masked to remove non-genomic sequence, aligned to the host genome and assembled into contiguous

173 We show that such sequence can be accurately aligned to the human genome and used to identify most of

174 Each resulting consensus was aligned to the human genome draft.

175 NP map with fosmid end-sequence pairs (ESPs) aligned to the human genome reference sequence, we have

176 The mouse contigs were aligned to the human genome sequence on the basis of 51,

177 of novel coding sequences that could not be aligned to the human reference genome, which include at

178 rangement of vertical cells is tonotopic and aligned to the innervation pattern of the AN.

179 Digital dental cast models were aligned to the interocclusal records.

180 ining SNP analysis of whole-genome sequences aligned to the JH1 interval and subsequent SNP validatio

181 a single voxel (12 x 15 x 25 mm(3) = 4.5 ml) aligned to the long axis of each hippocampus in nine pro

182 hus the animal-vegetal axis of the oocyte is aligned to the nuclear axis of the bouquet.

183 When the data are temporally aligned to the onset of movement, visual contrast sensit

184 on was determined from peri-event histograms aligned to the onset of the behavior.

185 While neither state is optimally aligned to the OPSA, each input state is equally amplifi

186 bases in length, which can be unambiguously aligned to the phi X 174 reference genome, and demonstra

187 SPW-R-triggered fMRI maps show that ripples aligned to the positive peak of their SPWs have enhanced

188 Atomic models of the ribosomal subunits were aligned to the programmed ribosome from Thermus thermoph

189 ed PCR, and resulting product sequences were aligned to the recently published tomato genome.

190 to ABACAS is a set of contigs which will be aligned to the reference genome, ordered and orientated,

191 bscura subclade using 18 resequenced genomes aligned to the reference genome.

192 ted from sequence reads that were abnormally aligned to the reference genome.

193 vides a comprehensive catalog of transcripts aligned to the reference sequence.

194 Sequencing reads were processed and aligned to the reference to identify possible single-nuc

195 rons and octavolateral efferent neurons were aligned to the reticulospinal scaffold by mapping neuron

196 rge transmission through a C-shaped aperture aligned to the sharp apex (<10 nm radius) of a template-

197 d a periodic pattern cycling at ~10 Hz phase-aligned to the sound.

198 nning of the task, especially when LFPs were aligned to the stimuli.

199 ynchronization phase for the gamma-band when aligned to the stimuli.

200 dentally, the plane of cell division becomes aligned to the surface plane of the embryo and oriented

201 The SPECT images were first aligned to the Talairach-Tournoux atlas and then analyze

202 mes that have been sequenced, annotated, and aligned to the target genome provide evidence of existen

203 The reads are then aligned to the targets to discover variants.

204 The poly(dimethylsiloxane) channel is aligned to the transducers on the top surface of the sub

205 chical models of the isotopic niche, closely aligned to the trophic niche, reveal the degree of segre

206 It included 353 amino acids that aligned to the U. ramanniana DGAT2A protein and a 243-am

207 from our results that area 19 in cat is more aligned to the ventral stream and area 18 to the dorsal

208 e ventricular wall, with GFAP-positive cells aligned to the ventricle.

209 ligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 x 76 bp paire

210 in without any measurable novelty correlates aligning to the human MMN.

211 ad only a reference database is required for aligning to the query sequences, making our method easil

212 the Xenopus larval skin, where ciliary flow aligns to the anterior-posterior (A-P) axis.

213 to have a rough estimate of where the contig aligns to the reference genome, specifically, by identif

214 itional galactose-binding site in vSGLT that aligns to the S1 site of LeuT.

215 PyMOL and receive a stream of search results aligned to their query within a few seconds.

216 onnected if their preferred orientations are aligned to their topographic separation.

217 utation simulator and the perfect cDNAs were aligned to them using Pairagon and 12 other aligners.

218 astomeric micropillars and microspheres self-aligned to them, could widen the scope of soft material-

219 inciples that determine how circadian clocks align to these external cycles are not well understood.

220 ed in a specific gene to visualize the reads aligned to this gene to estimate cell-specific preferenc

221 e internal genes of ca B/Ann Arbor/1/66 were aligned to those of other influenza B viruses.

222 The piRNAs were aligned to transposons with a maximum of three mismatche

223 ays with greater than 98.5% of the nanowires aligned to within +/-1 degrees of the combing direction.

224 sion tensor calculated from the NMR data are aligned to within 12-23 degrees of the principal axes of