ライフサイエンスコーパス: amino acid composition

1 called PseKRAAC (the pseudo K-tuple reduced amino acids composition).

2 n vitro could be predicted entirely based on amino acid composition.

3 uence does not reveal mutations altering its amino acid composition.

4 dn/dc of unmodified proteins based on their amino acid composition.

5 that the observed effects are independent of amino acid composition.

6 ins attached to functional domains of normal amino acid composition.

7 Yeast prion formation is driven primarily by amino acid composition.

8 complete sequence coverage regardless of the amino acid composition.

9 ing the CRS motif with respect to charge and amino acid composition.

10 lecular species and that calculated from the amino acid composition.

11 an important role in regulating fetal plasma amino acid composition.

12 to attach to all polypeptides, regardless of amino acid composition.

13 gistic changes in overall genome content and amino acid composition.

14 B) or non-TMB on the basis of whole sequence amino acid composition.

15 zing the gene product composition and pseudo amino acid composition.

16 tion/deletion events while preserving repeat amino acid composition.

17 nal domain composition as well as the pseudo amino acid composition.

18 ng peptide ligands that differ in length and amino acid composition.

19 lso developed using ML-SMOTE and grey pseudo amino acid composition.

20 ary at their carboxyl terminus in length and amino acid composition.

21 ic pattern also seems independent of bias in amino acid composition.

22 ingle peptide with its m/z value and partial amino acid composition.

23 rified LPXTGase, which represents 27% of the amino acid composition.

24 for the comparison of proteins with standard amino acid composition.

25 -seq, exon array, protein docking and pseudo-amino acid composition.

26 n New Zealand influenced protein content and amino acid composition.

27 e preference for chain length or neighboring amino acid composition.

28 no acid residues in length regardless of the amino acid composition.

29 in total protein content or protein-derived amino acid composition.

30 s affected by both codon biases and specific amino acid composition.

31 he) and its application individually on must amino acid composition.

32 nality of PR without affecting the essential amino acid composition.

33 ine fragments (LMWPs) of various lengths and amino acid compositions.

34 differ primarily in size but exhibit similar amino acid compositions.

35 IL internal standards of varying lengths and amino acid compositions.

36 epeats and regions with significantly biased amino acid compositions.

37 teria likely reflects common biases in their amino acid compositions.

38 precursors provides information about their amino acid compositions.

39 inin fusion peptide of different lengths and amino acid compositions.

40 ast-squares minimization analysis applied to amino acid compositions.

41 provide (1) a platform to directly determine amino acid composition, (2) an input for database search

42 at elongation stages, i.e., codon usage and amino acid composition (5.3-15.7% and 5.8-11.9% of the t

43 The amino acid composition (AAC) based SVM model had an accu

44 The analytical benefit of these specific amino acid composition (AAC) ions is to restrict the dat

45 ter [10, 12] display strong heterogeneity in amino acid composition across sites and taxa and that no

46 t-ER organelles show striking asymmetries in amino acid compositions across the bilayer that is linke

47 ) interaction was not sequence-specific, but amino acid composition affected binding.

48 Encouraged by the success of pseudo-amino acid composition algorithm, we developed a freely

49 uences with conserved local correlations and amino acid composition almost matches the signal from pr

50 e entire prediction process was based on the amino acid composition alone without including any seque

51 mong sites and captures spatial variation in amino acid composition along the secretion signal.

52 y similar to antimicrobial peptides in their amino acid composition, amphipathic design, cationic cha

53 by mass spectrometry, Edman degradation, and amino acid composition analyses.

54 The amino acid composition analysis on the proteins, which w

55 The amino acid composition analysis showed that all three tr

56 Furthermore, amino acid composition analysis, coupled with scanning e

57 The modified Ser and Thr can be analyzed by amino acid composition analysis, N-terminal Edman degrad

58 and histidine modification as determined by amino acid composition analysis.

59 tal prediction accuracy reached to 71.8% for amino acid composition and 77.0% for amino acid pair com

60 to predict the subcellular location based on amino acid composition and amino acid pair composition.

61 uctures of the CDR-H3 base and loop, and the amino acid composition and average hydrophobicity of the

62 eeding could support elicitation, to improve amino acid composition and be considered as a tool for v

63 main was randomly shuffled while keeping the amino acid composition and C-terminal domain unchanged.

64 was investigated by the determination of the amino acid composition and calculation of several nutrit

65 different CDR-H3 diversities by varying the amino acid composition and CDR length.

66 mpass 19 amino acids, and only differ in the amino acid composition and charge at the six most carbox

67 ps 1 and 2, caused by modulations in length, amino acid composition and charge can play an important

68 lm and vesicle formation is dependent on the amino acid composition and charge of the peptides.

69 ough other components of dairy foods such as amino acid composition and conjugated linoleic acid may

70 CagY is distinguished by unusual amino acid composition and extensive repetitive sequence

71 (FPI) was extracted from flaxseeds, and its amino acid composition and functional properties (solubi

72 reate random coding sequences with specified amino acid composition and GC content for the purpose of

73 y that enables precise positional control of amino acid composition and incorporation frequencies.

74 y distinct from its human counterpart in its amino acid composition and its predicted range of struct

75 Here, we show that the amino acid composition and length of the IDL affects the

76 neration of substrate libraries of arbitrary amino acid composition and length that are self-renewing

77 significantly from Fab-protein interfaces in amino acid composition and light-chain participation.

78 t-exposed loops were diversified in terms of amino acid composition and loop length.

79 for phase separation depends on the overall amino acid composition and not the precise sequence of N

80 nfolded state energies are dependent only on amino acid composition and not the specific arrangement

81 l model of molecular evolution predicts that amino acid composition and nucleotide composition are dr

82 ng a wide range of lengths (33-300 residues) amino acid composition and number of secondary structura

83 first- and second-order statistics regarding amino acid composition and pairing at different relative

84 nd that the two differ substantially in both amino acid composition and protein secondary structure.

85 s are employed to control for differences in amino acid composition and protein size that reflect dif

86 using small angle X-ray diffraction (SAXS), amino acid composition and racemization analyses.

87 The amino acid composition and sequence complexity of SR pro

88 dered proteins are highly dependent on their amino acid composition and solution conditions, especial

89 Thus, the amino acid composition and stereochemistry of ATCUN meta

90 aracteristics of osteopontin with respect to amino acid composition and susceptibility to thrombin cl

91 at the optimum pH results from two factors - amino acid composition and the organization of the titra

92 hat allow the direct characterization of the amino acid composition and the protein secondary structu

93 Fractions showed different amino acid compositions and angiotensin I-converting enz

94 ics program is based on searching for biased amino acid compositions and for particular protein motif

95 Comparisons of family 2 beta-galactosidase amino acid compositions and modeling studies with the La

96 The amino acid compositions and sequences were determined by

97 Taking amino-acid composition and amino acid pair composition i

98 e a preferred repertoire in terms of length, amino acid composition, and average hydrophobicity.

99 adult cells, the length distribution, global amino acid composition, and charge distribution of the C

100 nce of gene expression on synonymous codons, amino acid composition, and intron presence and size in

101 designed with a single tryptophan, identical amino acid composition, and peptide bond as the only kno

102 ny of a gene's features, such as codon bias, amino acid composition, and size.

103 are CDR3 structural features such as length, amino acid composition, and unique amino acid residues a

104 osition, quite similar to the PseAAC (pseudo amino acid composition) approach widely used in computat

105 gene ontology, functional domain and pseudo amino acid composition approaches, a new method has been

106 L-NH(2) (3F-2), were designed using the same amino acid composition as 3F(3) and 3F(14).

107 ns formed by supercharging while eliminating amino acid composition as a potential confounding factor

108 Chemical and amino acid composition as well as functional properties

109 able to obtain preparations of well balanced amino acid composition as well as proved functional prop

110 n article, the number of ECD/ETD product ion amino acid compositions as a function of nominal mass in

111 to random sequences with uniform and natural amino acid compositions, as observed by a lower average

112 tive analogues of compstatin by altering its amino acid composition at positions 4 and 9.

113 o acids in the triad likewise imply that the amino acid composition at the nucleotide site could modu

114 gested that the resulting correlations among amino acid compositions at different sequence positions

115 the present study, copolymers with modified amino acid compositions (based on the binding motif of m

116 We compare the amino acid composition between groups of regulated and u

117 ions were consistently lower, and nucleotide/amino acid composition bias and codon bias higher, in mo

118 results from this same mechanism, as well as amino acid composition bias and increases in AT content.

119 itution of the LBD with peptides of the same amino acid composition but different sequence is not spe

120 its virocidal activity, which depends on its amino acid composition but not its primary sequence or c

121 he differentiation of peptides with the same amino acid composition but with a different sequence (ho

122 Using four aS variants with identical amino acid compositions but rearranged pseudorepeat moti

123 ble, such as global characteristics like the amino-acid composition (C), predicted secondary structur

124 vealed a putative receptor binding site with amino acid compositions characteristic for polysaccharid

125 Amino acid composition comparison of the predicted tubul

126 Its unique amino acid composition containing Asp-Ser (DS)-rich repe

127 to obtain wines of higher quality since must amino acid composition could affect the wine volatile co

128 Additionally, we present amino acid composition data and average protein length c

129 astodon samples pass these tests, absence of amino acid composition data, lack of evidence for peptid

130 logically conserved "orthosteric site" whose amino acid composition defines the pharmacological speci

131 Here we show that LCR abundance and amino acid composition depend largely, but not exclusive

132 e murine gastric mucosa, suggesting that the amino acid composition-dependent oxidant-quenching role

133 igands; instead, the pockets yield different amino acid compositions despite very similar distributio

134 but also functional homologues, albeit their amino acid composition differences are likely to influen

135 ein concentration, expression domain, or ICD amino acid composition does not account for the differen

136 Ure2 and Sup35 prion domains while retaining amino acid composition does not block prion formation, i

137 er significantly in primary sequence but not amino acid composition, equally activate DFF40/CAD.

138 Ae has been determined to 1.45 A, and L7Ae's amino acid composition, evolutionary conservation, funct

139 red small protein-like peptide with a simple amino acid composition features a temperature-driven alp

140 bias plays a significant role in shaping the amino acid composition for a large class of cellular pro

141 on that are derived from heuristics based on amino acid compositions for IDRs with low proline conten

142 RFCRYS utilizes mono-, di-, and tri-peptides amino acid compositions, frequencies of amino acids in d

143 case silk closely aligns with the predicted amino acid composition from the primary sequence of TuSp

144 rotein content, ash and minerals content and amino acid composition), functional properties (protein

145 igated for physico-chemical characteristics, amino acid composition, functional properties and antiox

146 The total amino acid composition had high proportions of Lys, Ala

147 Knowledge of how proteomic amino acid composition has changed over time is importan

148 ding the effects that particular active site amino acid compositions have on autodephosphorylation ra

149 The variant with the amino acid composition HEHEHE placed in the N-terminus g

150 discriminates between degradation signals by amino acid composition, implying the use of sequence-spe

151 Characterizing the amino acid composition in cell culture and fermentation

152 tRNA abundance but there is no difference in amino acid composition in differentially expressed genes

153 cted nucleosomes and affects codon usage and amino acid composition in genes.

154 ation supported by precursor feeding on must amino acid composition in grapevines.

155 Proteome-wide patterns of amino acid composition in microbes appears to reflect na

156 howed a remarkable degree of conservation of amino acid composition in spite of sequence differences.

157 hangers may be important determinants of the amino acid composition in the fetal circulation.

158 It has been proposed that the amino acid composition in the human variant of FOXP2 has

159 a measure of translation rates, we show that amino acid composition in the proteomes of Escherichia c

160 Analysis of the similarity based on the amino acid composition indicated the existence of differ

161 Comparison of their amino acid compositions indicates conservation of predom

162 ng or destabilizing effects, suggesting that amino acid composition influences mRNA stability.

163 relationship between intrinsic disorder and amino acid composition is emphasized.

164 dex increment, a substantial global shift in amino acid composition is required, which can naturally

165 electronic transport via peptides and their amino-acid composition is still absent.

166 into the predictor, the 'amphiphilic pseudo amino acid composition' is introduced to represent the s

167 that [URE3] formation is driven primarily by amino acid composition, largely independent of primary s

168 ionization (MALDI) extraction delay, peptide amino acid composition, matrix, and ammonium sulfate con

169 ys), this finding suggests that selection on amino acid composition may be a general feature of the e

170 within the paratope region and (b) tailored amino acid composition mimicking antibody binding-site c

171 a prion-forming domain with strongly biased amino acid composition, most notably enriched for Q or N

172 the primary sequence has been scrambled, the amino acid composition mutated, or the location of vario

173 s not block prion formation, indicating that amino acid composition, not primary sequence, is the pre

174 Overall, amino acid composition, nucleotide similarities, and rep

175 These results imply that conservation of amino acid composition occurs through amino acid replace

176 The discovery that the amino acid composition of a polypeptide, not the specifi

177 The method was then used to infer the amino acid composition of a set of proteins in the LUA.

178 By modeling the preferences between the amino acid composition of a socket and knob, we undertak

179 Here we show the location and amino acid composition of all of the B-cell epitopes in

180 hanges are associated with difference in the amino acid composition of alpha1(I) and alpha2(I) chains

181 se of LC-MS/MS method for analysing the free amino acid composition of amaranth grain.

182 The amino acid composition of Asphodeline peshmeniana was we

183 The amino acid composition of BAM1 and BAM3 orthologs reflec

184 The amino acid composition of collagen is unique due to its

185 The amino acid composition of each region remains similar ac

186 ich can naturally explain the highly unusual amino acid composition of gamma-crystallins and their fu

187 everal published estimates of the endogenous amino acid composition of ileal digesta in humans, to ou

188 size of this scaffold determines the unusual amino acid composition of its binding sites, mimicking t

189 crambled peptide (Mel-SCR) that contains the amino acid composition of melittin with minor rearrangem

190 rvature generation places constraints on the amino acid composition of membrane disruptive peptides.

191 and using tailored codons that mimicked the amino acid composition of natural CDR-H3 sequences.

192 The amino acid composition of Nephila clavipes dragline silk

193 The amino acid composition of NORS regions differed from tha

194 oteins are employed to determine whether the amino acid composition of peptides reflects natural sele

195 demonstrated that, properly represented, the amino acid composition of protein sequences contains the

196 this metabolic cycling has likely biased the amino acid composition of proteins across the S. cerevis

197 Third, overall amino acid composition of proteins closely resembles tRN

198 with a simple model of weak selection on the amino acid composition of proteins in which codon reassi

199 Amino acid composition of proteins varies substantially

200 mammalian genome affecting the SC usage, the amino acid composition of proteins, and the primary stru

201 Analysis of the amino acid composition of raw egg case silk closely alig

202 ands was remarkably similar to the predicted amino acid composition of the AcSp1-like protein, which

203 protein structures showed differences in the amino acid composition of the active site that could exp

204 e dependence of substrate specificity on the amino acid composition of the active-site loop displays

205 essed VH and VL genes and by influencing the amino acid composition of the Ag binding site.

206 tumor-to-organ ratios were influenced by the amino acid composition of the binding surface of the tra

207 that can bind I-E(d) and variability in the amino acid composition of the C and N termini of these p

208 otein design force field by constraining the amino acid composition of the designed sequences to that

209 The resulting reduction in cognate amino acid composition of the enzymes comprising a parti

210 The amino acid composition of the fibroins extracted from th

211 g BLUF domains show little difference in the amino acid composition of the flavin binding pocket, the

212 reducing the protein content of formula, the amino acid composition of the formula protein becomes im

213 ding accessibility of the modification site, amino acid composition of the glycosylation consensus se

214 Therefore, both the sequence length and the amino acid composition of the insert were important.

215 to interact with integrins is related to the amino acid composition of the integrin-binding loop in t

216 The proteomic amino acid composition of the Last Universal Ancestor (L

217 In this way, the amino acid composition of the ligand-binding site can be

218 However, the amino acid composition of the MSD core does influence th

219 The substantial modification in the amino acid composition of the must seems to be a crucial

220 The amino acid composition of the paratope reflects the libr

221 Since the algorithm employed depends on the amino acid composition of the peptide and not its sequen

222 h of the interpeptide bridge, as well as the amino acid composition of the peptide, confers the maxim

223 n can occur is seen to depend heavily on the amino acid composition of the peptide.

224 ) can be accounted for with reference to the amino acid composition of the protein-based binding medi

225 unction, of proteins may act globally on the amino acid composition of the proteome, but are less fir

226 l difference between the NOS isoforms is the amino acid composition of the pterin cofactor binding si

227 hidden semi-Markov model to characterize the amino acid composition of the signal, thus providing a c

228 [PSI+] formation is driven primarily by the amino acid composition of the Sup35p prion domain, and t

229 osed to originate from subtle differences in amino acid composition of the surface grooves on an amyl

230 We also observed that the amino acid composition of the V4 region contributes to t

231 : the V and J gene choice and the length and amino acid composition of the variable region.

232 nes the effects of changes in the length and amino acid composition of this linker on catalytic activ

233 Additionally, we found the inferred amino acid composition of this protein set in the LUA to

234 bicity, number of transmembrane helices, and amino acid composition of transmembrane segments.

235 ccurrence was shown to be conditioned by the amino acid composition of two surface-exposed alpha-heli

236 This "design rule" is consistent with the amino acid compositions of 1080 known cationic AMPs.

237 The amino acid compositions of bovine, porcine and fish gela

238 le most important source of variation in the amino acid compositions of functionally related proteins

239 he differential in the idealized "canonical" amino acid compositions of native and trap layers.

240 ology, and the correlation between the total amino acid compositions of proteins.

241 The amino acid compositions of proteobacterial proteins were

242 dy by Piez et al. in which they compared the amino acid compositions of rat skin and tail tendon type

243 Based on amino acid compositions of several peptides, the treS ge

244 We show that amino acid compositions of the channel significantly dif

245 The amino-acid composition of proteins dictates that many sy

246 table bonds) and hydrophobicity), and to the amino-acid composition of the caseins.

247 ides, revealing new details of the effect of amino acid composition on TGase substrates.

248 roteins, and most of these have very unusual amino acid composition or sequence.

249 cture, which may be caused by alterations in amino acid composition or solution conditions (e.g., tem

250 OM64, showing that slight differences in the amino acid composition or structure of the chaperones in

251 form: is this phenomenon driven primarily by amino acid composition, or, as a recent computational an

252 derived the most probable parameters (e.g., amino acid composition, peptide hydrophobic content, and

253 Our results indicate that specific amino acid composition plays a fundamental role in molec

254 aracterised by measurement of fatty acid and amino acid composition, primary and secondary lipid oxid

255 of the amino acid mixture, and provides both amino acid composition profiles and D/L ratios for ~11 a

256 gene translation initiation signal, protein amino acid composition, protein structure, tRNA abundanc

257 zing the functional domain (FunD) and pseudo-amino acid composition (PseAA), a new strategy called Fu

258 -coupled information into the general pseudo-amino acid composition (PseAAC) and introducing the cova

259 special focus on the introduction of pseudo amino acid composition (PseAAC), its different modes and

260 equency of self-interactors as a function of amino acid composition ranged over five orders of magnit

261 n thought to rely mostly on their particular amino acid composition, rather than on their sequence.

262 own protein isoforms differing in C-terminal amino acid composition, referred to as RET9 and RET51.

263 These changes in amino acid composition result in stronger correlations b

264 Analysis of amino acid composition revealed that cocoa autolysates w

265 hydrolysates or peptides are related to the amino acid composition, sequence and length.

266 molecular and structural attributes such as amino acid composition, sequence variants, and post-tran

267 nce of diverse protein features, such as its amino acid composition, sequence-order effects, terminal

268 We observed that amino acid compositions, sequence complexity, hydrophobi

269 These evolved bacteria with new-to-nature amino acid composition showed robust growth in the compl

270 Degree of hydrolysis (DH), amino acid composition, solubility, emulsion and foaming

271 be sub-divided by expression level, length, amino-acid composition, solubility, secondary structure

272 to compare proteins with markedly different amino acid compositions, such as transmembrane proteins

273 The predicted domain profile and amino acid composition suggest that its N-terminus may b

274 r of repeat units, as well as nucleotide and amino acid composition, suggesting that natural selectio

275 xin protein of comparable size but different amino acid composition, suggesting that the physical pre

276 Using this X-ray data, we analyze the amino acid composition surrounding the 19 Xe sites and c

277 These mbtins are shorter, and have different amino acid compositions, than the characterized mbtin fr

278 t discriminant algorithm based on the pseudo-amino acid composition that has incorporated quasi-seque

279 We introduce a method to estimate ancestral amino acid composition that is based on expectation-maxi

280 simulations of two archetypal sequences with amino acid compositions that are mixtures of charged, hy

281 n are used to compare protein sequences with amino acid compositions that differ markedly from the ba

282 we show that despite their nearly identical amino acid composition, the functional roles of Lhcb1 an

283 e significant changes in sequence length and amino acid composition, the general architecture of the

284 rich proteins is predominantly determined by amino acid composition, the nucleation and oligopeptide

285 ces by the Sec61 translocon depends on helix amino acid composition, the positions of the amino acids

286 mbers are the components of the conventional amino acid composition; the next 2lambda numbers are a s

287 In addition to the peptide amino acid composition, this study investigated several

288 d a random sequence polypeptide of identical amino acid composition to CDelta4.

289 ss a CDR-H3 repertoire similar in length and amino acid composition to the DFL16.1 subset of the wild

290 anking the R&R Consensus have diversified in amino-acid composition to a much greater extent in RR-2

291 e amino acid concentration was not affected, amino acid composition was changed with proline and aspa

292 ements of the protein isolates, as a similar amino acid composition was found among the protein isola

293 The amino acid composition was less affected by both geograp

294 compared to the original flour, although the amino acid composition was similar to that of the flour.

295 By focusing exclusively on amino acid composition, we have developed a prion aggreg

296 The differences in protein and amino acid composition were not significant, and there w

297 eins, including electrostatic properties and amino acid composition, were calculated from their amino

298 c core of TNfn3 appears to be related to its amino acid composition, which makes it more fluid-like.

299 acid monomer of the Ocr dimer has an unusual amino acid composition with 34 negatively charged side c

300 to be very effective in estimating ancestral amino acid composition, with accuracy improving as the n