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1 and whether functional linkages between the aminoacyl (A) and E sites modulate the dynamics of prote
3 ccupies the ribosomal decoding center at the aminoacyl (A) site in a manner resembling that of the tR
4 ith elongation factor-Tu and GTP, enters the aminoacyl (A) site of the ribosome via a multi-step, mRN
5 ariety of three-nucleotide codons within the aminoacyl (A) site, but how these endonucleases achieve
8 is converted to EF-Tu.GDP, forms part of an aminoacyl(aa)-tRNA.EF-Tu.GTP ternary complex (TC) that a
12 it is processed releasing a non-hydrolyzable aminoacyl adenylate that inhibits an essential aminoacyl
13 nsfer editing, which hydrolyzes misactivated aminoacyl-adenylate intermediate via a nebulous mechanis
14 This selective rejection of a non-protein aminoacyl-adenylate is in addition to known kinetic disc
17 e can specifically detoxify non-hydrolyzable aminoacyl adenylates differing in their aminoacyl moieti
19 e enzymes may be used to avert various toxic aminoacyl-adenylates that accumulate during antibiotic b
20 ognate tRNA, IleRS exhibits a 10-fold faster aminoacyl-AMP hydrolysis and a 10-fold drop in amino aci
21 ds by acylation of cysteine with N-(Pg-alpha-aminoacyl)- and N-(Pg-alpha-dipeptidoyl)benzotriazoles (
22 lpha-hydroxycarboxylic acids with N-Pg(alpha-aminoacyl)benzotriazoles followed by deprotection produc
24 of steady-state kinetic parameters for both aminoacyl-beta-naphthylamide and unmodified dipeptide su
27 ed alanyl-PG then revealed hydrolysis of the aminoacyl linkage, resulting in the formation of alanine
29 ves an amide bond connecting the peptidyl or aminoacyl moieties of, respectively, intact and processe
32 trolling the stability and reactivity of the aminoacyl moiety and has important implications for the
33 The prediction of an interaction between an aminoacyl moiety and the adenine nucleobase was confirme
34 bstrates reveals the tRNA acceptor stem, the aminoacyl moiety, and the polar head group of PG as the
35 and YhhY protect bacteria from various toxic aminoacyl nucleotides, either exogenous or those generat
37 ove sequentially on the ribosome from the A (aminoacyl) site to the P (peptidyl) site to the E (exit)
40 ains were progressively added to cytoplasmic aminoacyl transfer RNA (tRNA) synthetases during evoluti
41 an expanded translation machinery, including aminoacyl transfer RNA synthetases with specificities fo
42 Here, we perform simulations of large-scale aminoacyl-transfer RNA (aa-tRNA) rearrangements during a
45 lation are conserved in evolution, bacterial aminoacyl-transfer RNA synthetases are unable to acylate
47 ring protein synthesis, the ribosome selects aminoacyl-transfer RNAs with anticodons matching the mes
48 ptide, a peptidoglycan precursor used by the aminoacyl-transferase FemXWv for synthesis of the bacter
51 by mTORC1-S6K1 induces its release from the aminoacyl tRNA multisynthetase complex, which is require
53 rther, we tested the hypothesis that the two aminoacyl tRNA synthetase classes have originated from a
54 ide II (EMAP II), one component of the multi-aminoacyl tRNA synthetase complex, plays multiple roles
55 he accumulation of parkin substrates, AIMP2 (aminoacyl tRNA synthetase complex-interacting multifunct
57 nscripts of many amino acid biosynthetic and aminoacyl tRNA synthetase genes contain 5' untranslated
58 he amino acid and the generation of a mutant aminoacyl tRNA synthetase that can selectively charge th
59 d that mutations in a tRNA gene, aspT, in an aminoacyl tRNA synthetase, AspRS, and in a translation f
60 tal sRNA pool after met-tRNAi was charged by aminoacyl tRNA synthetase, co-eluted with sRNA by size e
66 tion are also substrates, including multiple aminoacyl tRNA synthetases, ribosomal proteins, protein
67 GlyRS) provides a unique case among class II aminoacyl tRNA synthetases, with two clearly widespread
69 o acids on the surface of EF-Tu that contact aminoacyl-tRNA (aa-tRNA) are highly conserved among bact
71 (EF-Tu) bound to GTP chaperones the entry of aminoacyl-tRNA (aa-tRNA) into actively translating ribos
75 translation by modulating GTP hydrolysis by aminoacyl-tRNA * EF-Tu * GTP ternary complexes during th
77 erase center of the ribosome interferes with aminoacyl-tRNA accommodation, suggesting that during can
79 t which acts as an analogue of the 3'-end of aminoacyl-tRNA and terminates protein synthesis by accep
80 ctor-1A and its ternary complex with GTP and aminoacyl-tRNA are common targets for the evolution of c
81 fects were observed using the same, natural, aminoacyl-tRNA at the A site and all rates of accommodat
82 vent stable binding and accommodation of the aminoacyl-tRNA at the A-site, leading to inhibition of p
84 f eubacterial IF1, by blocking the ribosomal aminoacyl-tRNA binding site (A site) at the initiation s
87 m, glycine, serine and threonine metabolism, aminoacyl-tRNA biosynthesis and taurine and hypotaurine
88 athways (pentose phosphate, carbon fixation, aminoacyl-tRNA biosynthesis, one-carbon-pool by folate)
89 olyamine, lysine, tryptophan metabolism, and aminoacyl-tRNA biosynthesis; and in CSF involved cortiso
90 etermined the crystal structure of EF-Tu and aminoacyl-tRNA bound to the ribosome with a GTP analog,
92 al proofreading underlies the inability of D-aminoacyl-tRNA deacylase (DTD) to discriminate between D
95 conditions, such as amino acid starvation or aminoacyl-tRNA depletion due to a high level of recombin
97 steps in the accommodation process, wherein aminoacyl-tRNA enters the peptidyltransferase center of
101 e activity reduces the amount of the cognate aminoacyl-tRNA in a cell-free translation system resulti
103 otic binding should prevent the placement of aminoacyl-tRNA in the catalytic site, it is commonly ass
104 findings demonstrate an unexpected role for aminoacyl-tRNA in the formation of dehydroamino acids in
105 codon recognition by elongation factor-bound aminoacyl-tRNA is initiated by hydrogen bond interaction
106 S. pneumoniae depends in part upon MurM, an aminoacyl-tRNA ligase that attaches L-serine or L-alanin
107 SILAC experiments conducted in culture, the aminoacyl-tRNA precursor pool is near completely labeled
108 ent within intracellular free amino acid and aminoacyl-tRNA precursor pools in dividing and division-
113 racycline interfere with tRNA binding to the aminoacyl-tRNA site on the small 30S ribosomal subunit.
115 hydrophobic lipid substrate PG and the polar aminoacyl-tRNA substrate to access the catalytic site fr
117 s problem by fast kinetics using full-length aminoacyl-tRNA substrates with atomic substitutions that
124 ubstrate recognition properties of a natural aminoacyl-tRNA synthetase (aaRS) must be modified in ord
126 The anti-codon-binding domain of an archeal aminoacyl-tRNA synthetase (aaRS) was discovered to posse
127 ondria of Saccharomyces cerevisiae, a single aminoacyl-tRNA synthetase (aaRS), MST1, aminoacylates tw
128 hrough metadynamics simulations on a class I aminoacyl-tRNA synthetase (aaRSs), the largest group in
129 JTV1/AIMP2, a structural subunit of a multi-aminoacyl-tRNA synthetase (ARS) complex, has also been r
131 to amino acid (AA) limitation of the entire aminoacyl-tRNA synthetase (ARS) gene family revealed tha
133 synthesis demonstrates that the misacylating aminoacyl-tRNA synthetase (GluRS(ND)) and the tRNA-depen
135 sed as a sense codon, and an orthogonal tRNA/aminoacyl-tRNA synthetase (RS) pair is used to generate
136 in living cells relies on an engineered tRNA/aminoacyl-tRNA synthetase (tRNA/aaRS) pair, orthogonal t
137 ibits aminoacylation, a unique example of an aminoacyl-tRNA synthetase being inhibited by a toxin enc
140 3 to form a stable and conserved large multi-aminoacyl-tRNA synthetase complex (MARS), whose molecula
141 sequestered in a high-molecular-weight multi-aminoacyl-tRNA synthetase complex (MSC), restricting the
143 sgenic overexpression of a parkin substrate, aminoacyl-tRNA synthetase complex interacting multifunct
144 The long form is a component of the multiple aminoacyl-tRNA synthetase complex, and the other is an N
145 ar proteins, in the case of a heterotrimeric aminoacyl-tRNA synthetase complex, the aggregated protei
147 a GlnRS and provides a paradigm for studying aminoacyl-tRNA synthetase evolution using directed engin
148 s study provides insights into how auxiliary aminoacyl-tRNA synthetase genes are regulated in bacteri
149 ded expression of amino acid transporter and aminoacyl-tRNA synthetase genes downstream of the stress
150 ysyl-tRNA synthetase (PylRS), a polyspecific aminoacyl-tRNA synthetase in wide use, has facilitated i
151 along with the identification of its cognate aminoacyl-tRNA synthetase makes it possible to map trans
154 roduced a Methanocaldococcus jannaschii tRNA:aminoacyl-tRNA synthetase pair into the chromosome of a
155 Using E. coli cells with a special tRNA/aminoacyl-tRNA synthetase pair, two PPARalpha variants w
158 Isoleucyl-tRNA synthetase (IleRS) is an aminoacyl-tRNA synthetase whose essential function is to
159 aspects of tRNA recognition from the parent aminoacyl-tRNA synthetase, relaxed tRNA specificity lead
160 ation, accumulation of the parkin substrates aminoacyl-tRNA synthetase-interacting multifunctional pr
163 be a rapid approach for directly discovering aminoacyl-tRNA synthetase-tRNA pairs that selectively in
164 nd enables the direct, scalable discovery of aminoacyl-tRNA synthetase-tRNA pairs with mutually ortho
166 ves modifying cells to express an orthogonal aminoacyl-tRNA synthetase/tRNA pair to enable the incorp
168 ) by introducing orthogonal amber suppressor aminoacyl-tRNA synthetase/tRNA pairs into a thiocillin p
171 alian cells was achieved using an orthogonal aminoacyl-tRNA synthetase/tRNA(CUA) pair (CpKRS/MbtRNA(C
174 on 166 using an evolved orthogonal nitro-Tyr-aminoacyl-tRNA synthetase/tRNACUA pair for functional st
178 us enzyme) derived from Class I and Class II aminoacyl-tRNA synthetases (aaRSs) acylate tRNA far fast
179 ynthesis of cognate amino acid:tRNA pairs by aminoacyl-tRNA synthetases (aaRSs) and accurate selectio
180 nate amino acid:transfer RNA (tRNA) pairs by aminoacyl-tRNA synthetases (aaRSs) and inaccurate select
189 ytoplasmic and potentially all mitochondrial aminoacyl-tRNA synthetases (aaRSs) were identified, and
190 curring can result from mechanisms involving aminoacyl-tRNA synthetases (aaRSs) with inactivated hydr
192 mitochondrial translation machinery, such as aminoacyl-tRNA synthetases (aaRSs), can also lead to dis
197 nds on a cytosolic complex (AME) made of two aminoacyl-tRNA synthetases (cERS and cMRS) attached to a
200 However, when CP1 domains from different aminoacyl-tRNA synthetases and origins were fused to thi
201 -box riboswitches regulate the expression of aminoacyl-tRNA synthetases and other proteins in respons
202 WHEP domains exist in certain eukaryotic aminoacyl-tRNA synthetases and play roles in tRNA or pro
204 lasmids enables the bulk purification of the aminoacyl-tRNA synthetases and translation factors neces
205 and specialization (neofunctionalization) of aminoacyl-tRNA synthetases and tRNAs from common ancestr
206 duced the current set of mutually orthogonal aminoacyl-tRNA synthetases and tRNAs that direct natural
213 curate transfer RNA (tRNA) aminoacylation by aminoacyl-tRNA synthetases controls translational fideli
215 Strains releasing asynchronously the two aminoacyl-tRNA synthetases display aberrant expression o
219 cause of this important biological function, aminoacyl-tRNA synthetases have been the focus of anti-i
221 cyl-tRNA synthetase (IleRS) is unusual among aminoacyl-tRNA synthetases in having a tRNA-dependent pr
222 m for understanding the role of mutations in aminoacyl-tRNA synthetases in neurological diseases.
223 is predominately dictated by the accuracy of aminoacyl-tRNA synthetases in pairing amino acids with c
226 ent sporulation and suggests that editing by aminoacyl-tRNA synthetases may be important for survival
230 rchers in the scientific community requested aminoacyl-tRNA synthetases to be targeted in the Seattle
231 les that transfer activated amino acids from aminoacyl-tRNA synthetases to the ribosome, where they a
234 In this study, we identified two class-I aminoacyl-tRNA synthetases with high similarities to con
235 ns such as the ribosome, or proteins such as aminoacyl-tRNA synthetases, but is unprecedented for a c
236 YajL substrates included ribosomal proteins, aminoacyl-tRNA synthetases, chaperones, catalases, perox
238 of tRNAs with their cognate amino acids, by aminoacyl-tRNA synthetases, establishes the genetic code
240 translation system components, in particular aminoacyl-tRNA synthetases, shows that, at a stage of ev
241 ntibiotic activity by specifically targeting aminoacyl-tRNA synthetases, validating these enzymes as
242 F-P by PoxA evolved from tRNA recognition by aminoacyl-tRNA synthetases, we compared the roles of EF-
243 from a common ancestor related to glutaminyl aminoacyl-tRNA synthetases, which may have been one of t
244 o acids and deacylated tRNAs is catalyzed by aminoacyl-tRNA synthetases, which use quality control pa
254 secondary metabolic pathways by hijacking an aminoacyl-tRNA to the antibiotic biosynthetic pathway.
255 ies: while TET sterically hinders binding of aminoacyl-tRNA to the ribosome, NEG stabilizes its bindi
256 d by the TEF1 and TEF2 genes in yeast) is an aminoacyl-tRNA transferase needed during protein transla
257 diated by the base pairing of a near-cognate aminoacyl-tRNA with a PTC and subsequently, the amino ac
258 g the rate of ATP consumption to the rate of aminoacyl-tRNA(AA) formation demonstrated that pre-trans
260 ngation factor-1A ternary complex (eEF1A.GTP.aminoacyl-tRNA) as a specific target and demonstrate com
262 Using a simple method to prepare homogeneous aminoacyl-tRNA, we show that the Bacillus subtilis glyQS
263 and near-cognate tRNA anticodons explore the aminoacyl-tRNA-binding site (A site) of an open 30S subu
265 y the description of an increasing number of aminoacyl-tRNA-dependent enzymes involved in secondary m
266 This review describes the three groups of aminoacyl-tRNA-dependent enzymes involved in the synthes
273 ing intermediates of translation elongation (aminoacyl-tRNAeEF1A), termination (eRF1eRF3), and riboso
274 ding of either EF-G to the PRE complex or of aminoacyl-tRNAEF-Tu ternary complex to the POST complex
275 ryotic elongation factor 1A (eEF1A) delivers aminoacyl tRNAs to the A-site of the translating 80S rib
279 ) are enzymes that transfer amino acids from aminoacyl-tRNAs (aa-tRNAs) to phosphatidylglycerol (PG)
280 zes proteins using exclusively L- or achiral aminoacyl-tRNAs (aa-tRNAs), despite the presence of D-am
285 omes decode mRNA codons by selecting cognate aminoacyl-tRNAs delivered by elongation factor Tu (EF-Tu
287 mponents to study initial codon selection of aminoacyl-tRNAs in ternary complex with elongation facto
289 eEF1A is responsible for the delivery of all aminoacyl-tRNAs to the ribosome, aside from initiator an
290 EF-Tu), a translational GTPase that delivers aminoacyl-tRNAs to the ribosome, plays a crucial role in
293 different pattern of binding of 10 different aminoacyl-tRNAs, clearly showing that this position is c
294 ontrol mechanism, the editing of misacylated aminoacyl-tRNAs, provides a critical checkpoint both for
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