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1 igated using the fluorescent purine analog 2-aminopurine.
2 using a primer-template complex containing 2-aminopurine.
3 itherto undetected physicochemical form of 2-aminopurine.
4 ted by PKR, and this could be inhibited by 2-aminopurine.
5 e fluorescent adenosine analogue 2'-deoxy, 2-aminopurine.
6 with an emission maximum characteristic of 2-aminopurine.
7 mutator background or after treatment with 2-aminopurine.
8 ctively incorporated the fluorescent probe 2-aminopurine 2'-O-methylriboside (2-AP) into the RRE sequ
11 substitutions of the fluorescent A-analog 2-aminopurine (2-AP) at -11 and two other positions in pro
13 a synthetic DNA primer/template containing 2-aminopurine (2-AP) at the template position opposite the
14 erone activity in the DIS conversion using 2-aminopurine (2-AP) fluorescence and nuclear magnetic res
15 ptophan fluorescence in the polymerase and 2-aminopurine (2-AP) fluorescence in the promoter DNA upon
17 ive incorporation of the fluorescent probe 2-aminopurine (2-AP) into a truncated form of the RRE sequ
21 mplate DNA constructs with 1 or 2 adjacent 2-aminopurine (2-AP) nucleotide residues (adenine analogue
22 trates containing the fluorescent reporter 2-aminopurine (2-AP) on the template strand, either at the
23 protein kinase pathway by the addition of 2-aminopurine (2-AP) prior to the ODP arrests CHO cells in
24 loy short (86 bp) synthetic promoters with 2-aminopurine (2-AP) substitutions in the region that beco
25 ed DNA containing the fluorescent reporter 2-aminopurine (2-AP) to study the reaction pathway of the
26 scription is activated in AMphi and PMphi, 2-aminopurine (2-AP) was used to block dsRNA-mediated acti
27 nalogs [inosine (I), purine riboside (PR), 2-aminopurine (2-AP), 2,6-diaminopurine (2,6-DAP), isoguan
31 2-AP)T5), containing the fluorescent base, 2-aminopurine (2-AP), and dT(pT)15 labeled at its 3'-end w
32 We have used a fluorescent adenine analog, 2-aminopurine (2-Ap), as a probe of local double helical s
33 rporating the fluorescent nucleotide probe 2-aminopurine (2-AP), opposite to the site (AB-APopp) or a
34 The fluorescent adenine base analogue, 2-aminopurine (2-AP), placed opposite an abasic site analo
35 rains are sensitive to the DNA base analog 2-aminopurine (2-AP), we screened for 2-AP-resistant (2-AP
42 ) in DNA can be converted to S6-methylthio-2-aminopurine (2-AP-6-SCH3) and 2-aminopurine-6-sulfonic a
45 determined using RNA hairpins labeled with 2-aminopurine (2AP) and monitoring the fluorescence change
50 leotide that is melted by the mtRNAP using 2-aminopurine (2AP) fluorescence that is sensitive to chan
52 CAG)n repeat, we have substituted a single 2-aminopurine (2AP) fluorescent base for adenine at select
56 erase (T4 pol) to primer-template DNA with 2-aminopurine (2AP) located at the primer terminus results
57 state fluorescence of the adenine analogue 2-aminopurine (2AP) opposite an abasic site demonstrated t
59 esses were triggered by photoexcitation of 2-aminopurine (2AP) residues site-specifically positioned
60 have used the fluorescent adenine analogue 2-aminopurine (2Ap) to probe the local double-helical stru
63 rchetypical fluorescent nucleoside analog, 2-aminopurine (2Ap), has been used in countless assays, th
64 ssed using the fluorescent purine analogue 2-aminopurine (2AP), incorporating 2AP between purine and
65 rescence lifetimes of the adenine analogue 2-aminopurine (2AP), replacing adenine opposite the uracil
66 employed, containing the fluorescent base, 2-aminopurine (2AP), substituted at the -11 position in a
68 se-modified nucleotides 2,6-diaminopurine, 2-aminopurine, 6-chloropurine, and inosine which would mak
69 methylthio-2-aminopurine (2-AP-6-SCH3) and 2-aminopurine-6-sulfonic acid (2-AP-6-SO3H) upon reaction
76 luorescence measurements of DNA containing 2-aminopurine allowed presteady-state real time observatio
78 treatment of porcine and bovine cells with 2-aminopurine, an inhibitor of PKR, increased the yield of
79 ing the population of an initially excited 2-aminopurine, an isomer of adenine, we can follow the cha
80 It relies on strategic incorporation of 2-aminopurine, an isosteric fluorescent adenosine analogue
82 ichroism (CD), fluorescence of adenine --> 2-aminopurine analogs, and fluorescence resonance energy t
84 lexes carried fluorescent DNA base analogs 2-aminopurine and 1,3-diaza-2-oxophenoxazine as environmen
87 e in photostability of a DNA base analogue 2-aminopurine and a coumarin derivative (7-HC) in 10-nm sp
88 sphorylation of PKR and inhibitors of PKR, 2-aminopurine and adenine, ablated poly(I:C)-induced gene
89 The fluorescence emission spectra of the 2-aminopurine and FRET derivatives suggest greater solvent
91 ped a rapid fluorescence-based assay using 2-aminopurine and measured the steady-state rate constants
93 The fluorescence of the adenine analogue 2-aminopurine and the cytosine analogue pyrrolocytosine is
94 e) of a hydrogen-bonded complex containing 2-aminopurine and thymine is just the first excited state
95 ecies is not a covalently modified form of 2-aminopurine and we suggest that it represents a hitherto
96 oorly in the presence of the base analogue 2-aminopurine, and exposure to the base analogue results i
97 ements with site-specifically incorporated 2-aminopurine, and functional assays indicate that the nat
98 ce of the yield of CT between photoexcited 2-aminopurine (Ap) and G through DNA bridges of varied len
99 -FB) which uses the fluorescent bases (FB) 2-aminopurine (AP) and pyrrolo-dC (P-dC) as fluorophores.
100 lex by examining photoinduced quenching of 2-aminopurine (Ap) as a result of hole transfer (HT) to gu
101 equence-specific hydration dynamics, using 2-aminopurine (Ap) as the intrinsic fluorescence probe and
102 s of analogous primer-templates containing 2-aminopurine (AP) at the primer 3' terminus indicate that
103 nformational changes upon catalysis, while 2-aminopurine (AP) fluorescence assays have detected conco
104 e, we use the fluorescent guanine analogue 2-aminopurine (AP) in nucleotide position 76, immediately
108 n which a fluorescent nucleobase analogue, 2-aminopurine (AP), occupies defined positions with respec
109 s-cleaving HDV ribozyme to the fluorescent 2-aminopurine (AP), we can directly monitor local conforma
114 s the recognition of 2,6-diaminopurine and 2-aminopurine, as confirmed in crystal structures of respe
116 ymerase binding to promoters incorporating 2-aminopurine at positions -4 through -1 support a model w
117 to synthetic tRNA(1)(Leu) substituted with 2-aminopurine at positions 36 and 37, fluorescence energy
118 apture the ultrafast decay dynamics of the 2-aminopurine base as the ligand, we have detected the pre
119 ergy transfer from normal DNA bases to the 2-aminopurine base in synthesized DNA oligomers were inves
123 conformational probes comprising pairs of 2-aminopurine bases site-specifically replacing adenine ba
125 )M(-1)s(-1) and 2.1 x 10(5)mM(-1)s(-1) for 2-aminopurine binding the adenine-responsive mutant ribosw
127 cosylase activity on 2-aminopurine/G and A/2-aminopurine but weaker activity on A/C than E. coli MutY
128 Stopped-flow fluorescence studies using 2-aminopurine-containing oligodeoxyribonucleotides further
130 The ability of protein-Ca(2+) to rearrange 2-aminopurine-containing substrates was monitored by low e
131 a a disulfide bond, 2'-deoxy-6-(cystamine)-2-aminopurine (d6Cys2AP) was synthesized and incorporated
132 )-primer-template (P/T) complex containing 2-aminopurine (dAP) and a metal exchange-inert Rh(III) der
133 Equilibrium binding studies utilizing a 2-aminopurine deoxypseudouridine DNA substrate showed that
136 NA bending by FRET and DNA unpairing using 2-aminopurine exciton pair CD to determine the DNA and pro
137 d filamentation phenotypes associated with 2-aminopurine exposure are effectively suppressed by null
138 the IRE-RNA, altering its conformation (by 2-aminopurine fluorescence and ethidium bromide displaceme
140 omic force microscopy (AFM) supported by a 2-aminopurine fluorescence base flipping assay to study da
141 shable observed rate constants of FRET and 2-aminopurine fluorescence changes indicate that DNA bendi
143 methionine to the M.EcoKI:DNA complex, the 2-aminopurine fluorescence changes to that of a new specie
144 Stopped-flow fluorometry monitoring the 2-aminopurine fluorescence defined the kinetics of uracil
147 ion of the correct NTP to the T7 RNAP-DNA, 2-aminopurine fluorescence increased rapidly and exponenti
149 Base-flipping kinetics (monitored using 2-aminopurine fluorescence intensity) were essentially syn
152 us DNA duplexes that is based on combining 2-aminopurine fluorescence measurements with a new quantit
153 ransfer analysis showed that a decrease in 2-aminopurine fluorescence occurs only when AdoMet is pres
154 sly reported that ADAR2 induced changes in 2-aminopurine fluorescence of a modified substrate, consis
155 similar, and both NC and Gag affected the 2-aminopurine fluorescence of bases close to the loop bind
158 fluorescence resonance energy transfer and 2-aminopurine fluorescence studies reveals that DNA bendin
160 n uses both steady-state and time-resolved 2-aminopurine fluorescence to show pronounced unwinding of
161 el22 by circular dichroism (CD), intrinsic 2-aminopurine fluorescence, and fluorescence resonance ene
171 SpMYH has greater glycosylase activity on 2-aminopurine/G and A/2-aminopurine but weaker activity on
172 Mutations G8(inosine), G8(diaminopurine), G8(aminopurine), G8(adenosine), and G8(uridine) folded prop
173 was completely inhibited by chelerythrine, 2-aminopurine, genistein, and W-7 and only partially or no
177 of magnitude (from 5.9 nM to 0.59 mM) for 2-aminopurine in a 1 cm x 0.17 cm fluorescence cuvette.
179 monitoring the increase in fluorescence of 2-aminopurine in DNA-T7 RNA polymerase complexes, we obtai
180 h, we insert the fluorescent base analogue 2-aminopurine in place of A1492 in an E. coli 16S rRNA A-s
181 tes containing the fluorescent base analog 2-aminopurine in place of adenine at specific positions in
182 NA internally labeled with the base analog 2-aminopurine in place of adenine to monitor transcription
184 y CD spectra and fluorescence lifetimes of 2-aminopurine in substrates and products that were indicat
186 FRET between end labels or fluorescence of 2-aminopurine in the stem as conformational probes, yield
188 ad high-affinity (K(i) = 0.2-4 microM) for 6-aminopurines, including adenine, 2'-deoxyadenosine, and
191 ame cannot be said for structures in which 2-aminopurine is base stacked with other nucleobases.
192 dimer, and no changes are detected if the 2-aminopurine is moved opposite the 3'-thymine of the pyri
193 tructure is available, the fluorescence of 2-aminopurine is often used as a signal for base flipping
195 s on the femtosecond dynamics of boxB RNA (2-aminopurine labeled in different positions), through mut
196 gate the nature of PAP domain flexibility, 2-aminopurine labeled molecular probes were employed in st
197 peptides using fluorescent titrations with 2-aminopurine labeled versions of the three GNRA-folded lo
198 udies presented include the utilization of 2-aminopurine-labeled DNA substrates, 2-aminopurine nucleo
199 mission maximum of a duplex substrate with 2-aminopurine located at the editing site, consistent with
204 showed that HX RNA carrying a fluorescent 2-aminopurine modification provides a model system that ca
205 and abasic modifications and G378/379 with 2-aminopurine, N7-deazaguanosine, and 6-thioguanosine.
207 diazotization-dediazoniation of two types of aminopurine nucleoside derivatives has been investigated
208 s not only from N(6)-substituted purine or 2-aminopurine nucleoside monophosphates but also from O(6)
211 phosphorolysis of natural 6-oxopurine and 6-aminopurine nucleosides was observed, with adenosine the
212 n of 2-aminopurine-labeled DNA substrates, 2-aminopurine nucleotide triphosphate, a nonhydrolyzable n
213 ing site-specific substitution of 2'-deoxy-2-aminopurine nucleotides at key adenosine positions.
214 nfluence of Gag on the fluorescence of the 2-aminopurine nucleotides at the base of the helix implied
215 the fluorescence intensity of one or more 2-aminopurine or 6-methylisoxanthopterin base analogs inco
216 In cells pre-exposed to the PKR inhibitor 2-aminopurine or in PKR-null cells, the activation of p38
217 mplexes, alteration of a guanine to either 2-aminopurine or nebularine resulted in an increase in K(d
220 was not affected by inhibition of PKR with 2-aminopurine, phosphorylation of MKK3/6 and p38 as well a
222 y conformational transition, reported by a 2-aminopurine probe, that takes place in the open ternary
224 ht bases upstream of the pause site, while 2-aminopurine probes show that the elongation bubble exten
225 coupling in the CD spectra of dimer 2-AP (2-aminopurine) probes at various positions in the ssDNA co
227 d by one-electron oxidation of 8-oxoGua by 2-aminopurine radicals generated by the two-photon ionizat
229 mechanism for selective hydrolysis of the 2-aminopurine residue in alkaline solution is predominantl
232 ectra of site-specifically placed pairs of 2-aminopurine residues have been used to probe the roles o
235 generated by the two-photon ionization of 2-aminopurine residues site specifically positioned in 5'-
236 gy CD and fluorescence spectra of pairs of 2-aminopurine residues that have been inserted at defined
239 This method involves protection of the 2-aminopurine ribonucleoside, reduction to the deoxyribonu
240 tes including 6-oxopurine ribonucleosides, 6-aminopurine ribonucleosides, and to a lesser extent puri
241 e only permissive growth conditions were a 6-aminopurine source in the presence of 2'-deoxycoformycin
242 ntum yield of nucleotide analogues such as 2-aminopurine strongly depends on base stacking interactio
245 asor diagrams is demonstrated here using a 2-aminopurine substituted telomeric G-quadruplex sequence.
246 semble, and fluorescence measurements with 2-aminopurine-substituted 3A-DNA provided initial tests of
248 of the HIV-1 packaging signal (Psi), using 2-aminopurine substitution to create a series of modified
249 perties of this hairpin are assessed using 2-aminopurine substitutions for adenine at six positions i
250 se stacking on fluorescence quantum yield, 2-aminopurine substitutions for adenine previously demonst
253 mutation frequency, the dam mutants had a 2-aminopurine-susceptible phenotype that could be suppress
254 iation rates; e.g., the protein releases a 2-Aminopurine:T base pair approximately 90-fold faster tha
256 By analyzing changes in fluorescence of a 2-aminopurine template base undergoing replication in real
258 ored using the fluorescence intensities of 2-aminopurines, the changes in the intensity relative to t
259 experiment showing that installation of a 2-aminopurine-thymine base pair at the cross-linking site
265 Using single substitutions of adenine with 2-aminopurine, we show that intrastrand folding in repeate
266 thyltransferase (GAATTC) was replaced with 2-aminopurine, which fluoresces upon excitation at 310 nm.
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