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3 alpha H58L replacement creates a completely apolar active site, which prevents electrostatic stabili
4 ing any polar functional groups) behave like apolar adsorbents and exhibit very interesting and unexp
5 al mechanism is not based on saponification, apolar adsorption or anion exchange, but most probably a
6 lar balances to measure interactions between apolar alkyl chains in 31 organic, fluorous and aqueous
8 eleasing hormone (GnRH) receptor contains an apolar amino acid in this region at a constant distance
12 ectron micrographs reveal that filaments are apolar and made of stacked tetramers oriented with expos
17 l contains an unusual alternating pattern of apolar and polar residue pairs that generate a rare righ
21 s in apolar, polar, or aggregate (sum of the apolar and polar) buried surface area in the V(L)92 muta
28 lity, the compressibility of water hydrating apolar atoms is somewhat larger than bulk water compress
29 s focused on separation of petrochemicals in apolar backgrounds, but the attention has moved now to t
33 en BRCA1 and PALB2 is primarily mediated via apolar bonding between their respective coiled-coil doma
34 exist linear correlations between losses of apolar buried surface and decreases in binding free ener
35 correlation between binding free energy and apolar buried surface area corresponds to 21 cal mol(-1)
38 that DosC is a globin-coupled sensor with an apolar but accessible heme pocket that binds oxygen with
39 mperature using the slightly polar CDCl3 and apolar C6D6 as solvents in 5 mM and 54 mM concentrations
40 ins, the detection of water molecules within apolar cavities and the determination of crystallographi
45 al phases, we estimate that occupancy of the apolar cavity in IL-1beta by solvent is close or equal t
46 The database was first screened against the apolar cavity site created by the mutation Leu99Ala (L99
49 meres that allocate polar cells to outer and apolar cells to inner positions initiate the first cell
54 In contrast, blocking the entrance to the apolar channel by increasing the size of Ala-55(E18) to
55 ze of the E7 gate and closing the end of the apolar channel in CerHb by site-directed mutagenesis.
56 gly polar channels are coupled to completely apolar channels, in which case auxin in the apolar part
58 ionic guests increases continuously with its apolar character, as shown by the significant change of
59 contributions of dispersion interactions in apolar cohesion were found to be strongly attenuated in
60 erature for the resolution of both polar and apolar complex mixtures components by NMR spin diffusion
61 re amphoteric in nature with the dispersive (apolar) component of surface energy dominating the speci
62 n-specific in polar compounds but less so in apolar compounds and a diffusive IE that is not position
63 e in water's heat capacity upon hydration of apolar compounds is one signature of the hydrophobic eff
64 ing the molecular interactions made by these apolar compounds with biological membranes or their effe
65 ctive site, the xylan backbone makes limited apolar contacts with the enzyme, and the hydroxyls are s
71 te in the E7 channel that can accommodate an apolar diatomic ligand and enhances ligand uptake partic
75 o promote lipid mixing and must be small and apolar (e.g., Gly or Ala) to support both lipid and cont
77 th 7alpha-OH groups of bile acids, and (iii) apolar EL1 residues map to hydrophobic ligand pharmacoph
79 approximately 2125 cm(-1), indicative of an apolar environment, is observed for CNRs bound to H64A o
82 2, WAVE2, and activation of CDC42 results in apolar F-actin localization, leading to defects in adhes
83 in which EPM expression was expressed in an apolar fashion on the surface of mammary epithelial cell
84 I present arguments here that ParM may be an apolar filament, in which the two helical strands are an
85 omplexes, which serve as building blocks for apolar filamentous structures that differ among cell typ
88 educing equivalents are transferred from the apolar flavin binding site to the protein substrate by d
89 dapted a UV photolabeling approach, using an apolar fluorescent probe, 4,4'-dianilino-1,1'-binaphthyl
91 nctionally critical approximately 20-residue apolar "fusion peptide" (HFP) that associates with targe
92 gesting that hydrophobic partitioning of the apolar gas from the aqueous phase into the relatively ap
95 higher affinity natural ligand, occupying an apolar groove between its alpha(1) and alpha(2) domain h
96 ce shows that the enthalpy of dehydration of apolar groups at the HMG-D/DNA interface is not fully co
98 es around polar and apolar groups: polar and apolar groups have a deficit or excess, respectively, of
99 The differential solubility of polar and apolar groups in water is important for the self-assembl
101 folded state results in hydration of exposed apolar groups of the interface and the disruption of hel
102 by extensive van der Waals contacts between apolar groups, i.e. a more tightly packed interface form
105 ferent hydration structures around polar and apolar groups: polar and apolar groups have a deficit or
106 apolar pockets can be designed to recognize apolar guests in water, complementary strategies are req
108 ccharomyces cerevisiae, four septins form an apolar hetero-octamer (Cdc11-Cdc12-Cdc3-Cdc10-Cdc10-Cdc3
111 operative activation of protic, hydridic and apolar HX bonds across a Group 13 metal/activated beta-d
113 er a minimalistic model interface between an apolar hydrophobic phase (n-decane) and an aqueous phase
117 ever, the presence of the Met residue in the apolar interface of the tetramer markedly alters its loc
118 e PE and PPE proteins mate along an extended apolar interface to form a four-alpha-helical bundle, wh
119 /L, the peptide primarily binds on the polar-apolar interface with its helical axis parallel to the b
120 rom simple starting materials at other polar-apolar interfaces; this could have numerous materials an
122 Strong loss-of-function mutants assemble apolar intersecting microtubule arrays, whereas weaker m
126 uried sites: a hydrophobic cavity that binds apolar ligands, a slightly polar cavity that binds aryl
127 solvation energies improved ranking of known apolar ligands, and better distinguished them from more
128 igh-density lipoproteins (HDL); they have an apolar lipid core and polar surface composed of exchange
129 complexes containing a triacylglycerol-rich apolar lipid core and polar surface composed of phosphol
135 of compact bones indicated a high content of apolar lipids, including triglycerides and cholesterol e
137 phosphatidylinositol mannosides, and highly apolar lipids, similar to the Minnikin model of 1982.
138 bmicrolitre aqueous droplets submerged in an apolar liquid containing lipid can be tightly connected
139 ctly requires Sec18 and Sec17, and the Sec17 apolar loop has functions beyond membrane anchoring.
141 s-SNARE complexes, oligomerizes, and inserts apolar loops into the apposed membranes, locally disturb
145 urfactant migration entails a net shift from apolar membrane spanning regions to more polar regions o
147 dissolved in DMSO-d6/GL (8:2, v/v) and of an apolar mixture made of beta-ionone, (+/-)-citronellal, (
149 rophobic pocket in HCAII that stabilizes the apolar moiety of sulfonamide inhibitors is replaced with
150 that has frequent dynamic interactions with apolar molecules; both hexane and a long-chain fatty aci
151 e this hypothesis, acidic, basic, polar, and apolar mutations were introduced at positions 94-98.
153 s are consistent with the model in which the apolar N-terminal and central regions of the peptides pe
154 on rate of HFPtr because of placement of the apolar N-terminal regions of all strands on the same sid
155 ith intermolecular hydrogen bonding of 15-16 apolar N-terminal residues and this hydrogen-bonding pat
159 others are required for transitions via the apolar or polar route and not amoeboid or mesenchymal mo
160 ed transformations involve the activation of apolar or weakly polar sigma-bonds (E-H and E-E' bonds,
161 stigating the coordination and activation of apolar or weakly polar sigma-bonds at copper using chela
163 ferentially populates a helical structure in apolar organic solvent, while in pure water, the peptide
164 mply bubbling CO2 through their solutions in apolar organic solvents (CHCl3, benzene) and even in the
169 apolar channels, in which case auxin in the apolar part is 'dragged along' by the polar part in a so
170 protein-binding site, comprising an unusual apolar patch on the surface together with surrounding ch
171 ) (PEO-b-PCL) block polymers modified at the apolar PCL terminus with thioctic acid and at the polar
172 hat was achieved choosing the immunodominant apolar peptide from alpha2-gliadin as a target for selec
175 t two specific locations within the spacious apolar pocket and an ordering effect of endogenous resid
177 a beta-barrel structure with a predominately apolar pocket representing a potential binding site for
178 mic acid analogues interact with the dynamic apolar pocket that surrounds the C4 and C5 hydroxyl grou
183 ves as a gate for passage of ligand into the apolar pocket; and (iii) that this loop and the adjacent
185 cognized approach to this challenge in which apolar pockets can be designed to recognize apolar guest
186 of classical monopartite NLSs by generating apolar pockets for the P3 and the P5 lysine/arginine sid
187 e residues from Arp7A that occupy equivalent apolar pockets in both LIM domains as well as an interve
188 orrelation was observed between decreases in apolar, polar, or aggregate (sum of the apolar and polar
190 pare nanoparticles that have a gold core, an apolar polyester layer for drug loading, a polar PEO cor
192 s from the aqueous phase into the relatively apolar protein interior lowers the free energy barrier f
194 ion of cofilin expression in MTLn3 cells (an apolar randomly moving amoeboid metastatic tumor cell) c
196 in increased conformational disorder of the apolar region and further dehydration of the interfacial
197 itionally, the N-terminal domain contains an apolar region comprising almost half its solvent accessi
199 re was a good match between the width of the apolar region of the bilayer and the hydrophobic length
200 (HIV) fusion peptide (HFP) is the N-terminal apolar region of the HIV gp41 fusion protein and interac
201 se data show that Asn side chains within the apolar region of the transmembrane helix provide a signi
203 s affording a combination of hydrophobic and apolar regions on one hand and dipolar, protic, and posi
204 nment for membrane proteins and can serve as apolar reservoirs for lipid-derived second messengers or
206 Prior work showed that converting K84 to an apolar residue or converting V96 to an acidic residue im
207 often occupying the same face, whereas polar/apolar residue pairs tend to occupy opposite faces.
209 is postulated that propensities possessed by apolar residues are due in part to peptide-solvent inter
212 essivity in which wedging of Leu78 and other apolar residues into the base pairs of the DNA restricts
215 winding of the DNA is facilitated by several apolar residues, including Leu78, that wedge into the ba
216 ments used to determine the propensities for apolar residues, plus glycine, asparagine, and glutamine
218 bstitutions in the guide strand of U for the apolar ribo-2,4-difluorotoluyl nucleotide (rF) as well a
219 ed on identifying novel substituents for the apolar S2 pocket of cathepsin L and was conducted entire
222 The hydrophobic interface is stabilized by apolar side chains from adjacent sheets, whereas the hyd
225 roteins are alpha-helical with predominantly apolar side-chains packing in a hydrophobic interface.
226 ices in parallel and in register so that the apolar sides face each other, and the oppositely charged
227 ability of copper to promote the addition of apolar sigma-bonds to CC multiple bonds via a 2e redox s
230 dynamics simulation the solubility of small apolar solutes in a solvent whose particles interact via
231 ate (K(D) > or = 10(6) M(-1) per capsule) in apolar solution with the formation of linear self-assemb
232 ion with cyclohexanol and cyclohexene in the apolar solvent decalin has been studied using in situ (1
233 applied to a pure component suspension in an apolar solvent, a strong inhomogeneous electric field in
234 pam on the MIP columns was achieved using an apolar solvent, and the binding capacity of the polymer
241 gh a concerted mechanism in gas phase and in apolar solvents but a stepwise mechanism in polar solven
242 phylloxanthobilin Z isomers photodimerize in apolar solvents by regio- and stereospecific thermorever
243 we show that using non-interacting anions in apolar solvents can maximize favorable interactions betw
248 r (cis) around the carbonyl-nitrogen bond in apolar solvents, in contrast to other aliphatic secondar
249 This is in contrast to partitioning into apolar solvents, which exhibits the classic hydrophobic
257 -C) was identified, which has a crystalline, apolar structure and exhibited significant antioxidant a
258 h hydrophobicity due to long alkyl chains or apolar substituents appears to stabilize the interaction
259 ved in the presence of Ca(2+), suggests that apolar surface area buried in the Ca(2+)-bound state bec
263 is inferred to result from the reduction of apolar surface area of the enzyme ensuing from a conform
266 such denaturation decreased with increasing apolar surface area, all proteins exhibited high melting
267 t accompany DNA binding, derived from buried apolar surface area, coupled folding, and restriction of
268 a simple model including terms for polar and apolar surface area, surface complexity, and pocket dime
269 lated estimate indicates burial of polar and apolar surface areas in equal measure upon ligand bindin
270 used to generate cavities with increasingly apolar surface areas inside a dodecameric ferritin-like
271 served hydrophobic region forms an extensive apolar surface at a dimer interface on the opposite side
272 cause the correlation of entropy change with apolar surface burial is relatively weak, it cannot, on
274 rgetics correlates better with the amount of apolar surface buried upon sugar stacking on top of the
276 attribute this discrepancy to burial of the apolar surface in the N fragment (as burial of the polar
278 ng indicate no significant burial of protein apolar surface nor altered accessibility of Trp-121 upon
281 tic difference, on average, in the burial of apolar surface or polar surface area, implying that van
282 gest that burial of about 1000--1600 A(2) of apolar surface takes place in the N fragment (probably a
283 his corresponds to 648 +/- 36 A(2) of buried apolar surface upon Nkx2.5(C56S) binding duplex B-DNA.
284 ATH is accompanied by diminished exposure of apolar surface, relative to Ca(2+)-free rat beta-PV, per
287 mann equation, with a surface-area-dependent apolar term and contributions from conformational change
289 vided that the organic layer is sufficiently apolar, the resultant Meisenheimer adduct is considerabl
290 polarity: It is deactivated/switched-off in apolar toluene, while in polar benzonitrile it is activa
291 amino acids extending diagonally across the apolar top of Lox-1, a central hydrophobic tunnel that e
292 ed photoproduct, together implicate both the apolar tunnel and the static and dynamic properties of t
293 ork within the distal heme pocket and a long apolar tunnel linking the external solvent to the distal
294 ccessible side chain positions; and (iv) the apolar tunnel linking the heme site to the solvent biase
295 e distal heme pocket, (ii) from the adjacent apolar tunnel prior to conformational relaxation, and (i
296 onformational relaxation, and (iii) from the apolar tunnel subsequent to conformational relaxation.
297 utating these negatively charged residues to apolar uncharged residues completely blocks activity, ev
298 t; and (iii) that this loop and the adjacent apolar V59-W63 loop form a surface patch with two expose
299 NAP and/or synaptotagmin, which insert their apolar "wedge" domains into the bilayers, initiating the
300 cations, i.e. RHO-ZMOF, and (iii) two rather apolar zeolitic imidazolate framework (ZIF) materials wi
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