ライフサイエンスコーパス: archaeal genome

1 to accurately and efficiently replicate the archaeal genome.

2 92 base pairs it is by far the largest known archaeal genome.

3 onserved in all or most of the bacterial and archaeal genomes.

4 n the unannotated regions of prokaryotic and archaeal genomes.

5 transposons present in diverse bacterial and archaeal genomes.

6 ction systems in the sequenced bacterial and archaeal genomes.

7 comparative genome analysis of the sequenced archaeal genomes.

8 homologous counterparts in the four complete archaeal genomes.

9 idered the evolutionarily stable core of the archaeal genomes.

10 ed by the completely sequenced bacterial and archaeal genomes.

11 over 1000 completely sequenced bacterial and archaeal genomes.

12 ne content and gene order similarity between archaeal genomes.

13 was built in 2008 to annotate bacterial and archaeal genomes.

14 putative encapsulin systems in bacterial and archaeal genomes.

15 ensus of CRISPR-Cas systems in bacterial and archaeal genomes.

16 en assumed that Pol B enzymes also replicate archaeal genomes.

17 the phylogeny of all available bacterial and archaeal genomes.

18 nts of the MVA pathway are often absent from archaeal genomes.

19 ir phylogenetic distribution among available archaeal genomes.

20 e functional annotation of new bacterial and archaeal genomes.

21 rtitioning technique to all proteins from 53 archaeal genomes.

22 omplete and publicly available bacterial and archaeal genomes.

23 tomated service for annotating bacterial and archaeal genomes.

24 sites and reconstructed RbkR regulons in 94 archaeal genomes.

25 s of GTPCHI have not been identified in most archaeal genomes.

26 one-component proteins in 365 bacterial and archaeal genomes.

27 eins from completely sequenced bacterial and archaeal genomes.

28 switch elements from the whole bacterial and archaeal genomes.

29 e target aptamer structures in bacterial and archaeal genomes.

30 probable horizontal origin) in bacterial and archaeal genomes.

31 notated as a selenocysteine synthase gene in archaeal genomes.

32 http://archaea.ucsc.edu/, currently with 26 archaeal genomes.

33 eins, is widely distributed in bacterial and archaeal genomes.

34 ems in more than 100 sequenced bacterial and archaeal genomes.

35 with operon structure in both bacterial and archaeal genomes.

36 onnected gene neighborhoods in bacterial and archaeal genomes.

37 d this method to several other bacterial and archaeal genomes.

38 naschii, Methanosarcina acetivorans (largest Archaeal genome, 5.8 Mb), and yeast.

39 These two archaeal genomes also have only one identifiable gene en

40 ucts from each of the complete bacterial and archaeal genomes and approximately 35% of those from the

41 viral and transposon genes) in bacterial and archaeal genomes and demonstrated statistically signific

42 stone sequences have been identified in many archaeal genomes and in environmental samples, and they

43 sable elements present in most bacterial and archaeal genomes and play an important role in genomic e

44 e below the photic zone, where bacterial and archaeal genomes and proteomes undergo a community-wide

45 in systems are ubiquitous in prokaryotic and archaeal genomes and regulate growth in response to stre

46 s been observed previously for bacterial and archaeal genomes () and reveal a trimodality in eukaryot

47 all index (4.2 GB for 4078 bacterial and 200 archaeal genomes) and classifies sequences at very high

48 pairs of completely sequenced bacterial and archaeal genomes, and for each genome a template-anchore

49 method was used to analyze 34 bacterial and archaeal genomes, and yielded more than 7600 pairs of ge

50 upporting the gene-regulatory repertoires of archaeal genomes are briefly noted.

51 yotic RNA polymerase (RNAP) II system, while archaeal genomes are more similar to bacteria with dense

52 Archaeal genomes are nearly devoid of RT in any form.

53 Archaeal genomes are particularly rich in such sequences

54 t, the transcriptional regulators encoded by archaeal genomes are primarily of bacterial rather than

55 As more archaeal genomes are sequenced, effective research and a

56 on and DNA repair for the maintenance of the archaeal genome at high temperatures.

57 are now nearly 1,000 completed bacterial and archaeal genomes available, most of which were chosen fo

58 s and detailed analysis of conserved motifs, archaeal genomes become as amenable to meaningful interp

59 et can be viewed in genomic context with the Archaeal Genome Browser at archaea.ucsc.edu.

60 The UCSC Archaeal Genome Browser offers a graphical web-based res

61 We have created a UCSC Archaeal Genome Browser, available at http://archaea.ucs

62 pathway except shikimate kinase are found in archaeal genomes by sequence homology to their bacterial

63 g the gene order in the completely sequenced archaeal genomes complemented by sequence profile analys

64 The majority of bacterial and archaeal genomes contain 6-14% non-coding DNA.

65 Most bacterial and archaeal genomes contain many genes with little or no si

66 Computer analysis of the archaeal genome databases failed to identify orthologues

67 Analyses of archaeal genomes did not reveal the presence of genes en

68 Although archaeal genomes encode a diverse set of type IV pilus s

69 Numerous bacterial and archaeal genomes encode from one to eight HicAB modules

70 However, many archaeal genomes encode more than one TFB and/or TBP lea

71 n silico analyses showed that most sequenced archaeal genomes encode predicted pilins and conserved p

72 All archaeal genomes encode RNA polymerase (RNAP) subunits E

73 logs of the 321-aa protein were found in all archaeal genomes examined, but not in eukaryotic or bact

74 Archaeal genomes feature a strong Shine-Dalgarno ribosom

75 gulating proteins has been identified in the archaeal genome, few of them have been studied at the mo

76 approach that searched completely sequenced archaeal genomes for a kinase-like protein with a patter

77 to be present in the sequenced bacterial and archaeal genomes from GenBank.

78 f PHX ribosomal protein (RP) genes where the archaeal genome generally encodes more RP genes and fewe

79 Sequencing of bacterial and archaeal genomes has revolutionized our understanding of

80 intriguing as: (i) bioinformatic searches of archaeal genomes have not identified lipoprotein biogene

81 Over 3000 microbial (bacterial and archaeal) genomes have been made publically available to

82 genome was sequenced in 1995, and the first archaeal genome in 1996.

83 Analysis of 26 bacterial and archaeal genomes indicates that the degree of clustering

84 y available draft and finished bacterial and archaeal genomes into quality-controlled clades, reports

85 he bza gene content of several bacterial and archaeal genomes is consistent with experimentally deter

86 A substantial fraction of bacterial and archaeal genomes is dedicated to antivirus defense.

87 tify noncoding RNA elements in bacterial and archaeal genomes is hampered by the difficulty of de nov

88 The evolution of bacterial and archaeal genomes is highly dynamic and involves extensiv

89 attern of single-copy genes in bacterial and archaeal genomes is the presence of 1-15 copies of each

90 Archaeal genomes lack a recognizable peptidyl-tRNA hydro

91 e cobinamide has been under question because archaeal genomes lack orthologs to the bacterial nucleos

92 undreds of sequenced bacterial and dozens of archaeal genomes leads to several generalizations on the

93 ce of two components of the MVA pathway from archaeal genomes led to the discovery of an alternative

94 Here I describe recent developments in archaeal genome maintenance, including investigations of

95 The absence of strand asymmetry in the archaeal genomes may reflect the presence of multiple or

96 acterium Synechocystis sp. genome nor in the archaeal genomes of Methanococcus jannaschii, Methanobac

97 ranscription-associated proteins in the four archaeal genomes, of which 168 have homologs only in Bac

98 OASIS annotations of 1737 bacterial and archaeal genomes offered an unprecedented opportunity to

99 The browser currently contains 115 archaeal genomes, plus 31 genomes of viruses known to in

100 for 55 species, including 16 bacterial and 4 archaeal genomes representing phylogenetically diverse l

101 approximately 90% of sequenced bacterial and archaeal genomes, respectively, and evolve rapidly, acqu

102 n 36 groups of closely related bacterial and archaeal genomes reveals purifying selection affecting A

103 Our sequence analysis of archaeal genomes reveals that the highly conserved ribos

104 served differences between the four complete archaeal genomes seem to reflect disparate approaches to

105 Each complete archaeal genome sequence contains a homolog of this arch

106 d Synechocystis sp., and the first available archaeal genome sequence, that of Methanococcus jannasch

107 None of the four archaeal genomes sequenced to date contain open reading

108 As all complete archaeal genome sequences contain an MTH1669 homolog, th

109 e reconstructed virus and host bacterial and archaeal genome sequences from community genomic data fr

110 The analysis of completed archaeal genome sequences led to the identification of a

111 haeal histones do not have histone tails and archaeal genome sequences provide no evidence for archae

112 In addition, of the six complete archaeal genome sequences published so far, five are the

113 Consortium (GSC) for reporting bacterial and archaeal genome sequences.

114 k for all bacterial genomes and one of three archaeal genomes sequences to date, confirming known or

115 ny areas of molecular biology, the advent of archaeal genome sequencing has now drawn researchers to

116 In addition, seven more archaeal genome sequencing projects are under way, inclu

117 A survey of bacterial and archaeal genomes shows that many Tn7-like transposons co

118 ransfer rates across available bacterial and archaeal genomes supports that the barriers observed in

119 iptional regulators encoded in bacterial and archaeal genomes that control gene expression in metabol

120 sable elements present in most bacterial and archaeal genomes that play an important role in genomic

121 collection of closely related bacterial and archaeal genomes that provides several tools to aid rese

122 In almost all archaeal genomes, the xpb gene lies adjacent to a conser

123 s were obtained for the poorly characterized archaeal genomes; these include a previously uncharacter

124 yses of completely sequenced prokaryotic and archaeal genomes, together with their annotations.

125 Since the first archaeal genome was sequenced, much attention has been f

126 The coverage of the archaeal genomes was only slightly lower than that of ba

127 ess of analysing the four available complete archaeal genomes, we have noted that certain regions cha

128 nce comparisons among complete bacterial and archaeal genomes, we have uncovered a putative MIG prote

129 kinase, and pyrophosphohydrolase families in archaeal genomes were evaluated as candidate enzymes for

130 Eight of the eleven archaeal genomes were from microbial species without pre

131 All archaeal genomes which have been sequenced are predicted

132 ins 966 complete and 157 draft bacterial and archaeal genomes, which collectively contain more than 2

133 Here we report the first archaeal genome-wide nucleosome occupancy map, as observ