ライフサイエンスコーパス: archive

1 thy Korean individuals (KOVA; Korean Variant Archive).

2 surgery available through the Cancer Imaging Archive.

3 experience revealed by this rich epistolary archive.

4 otein identification data available in PRIDE Archive.

5 olved and absolutely dated marine delta(18)O archive.

6 from the Virtual International Stroke Trials Archive.

7 nts, where they provide a unique sedimentary archive.

8 ss requirements of the newly developed PRIDE Archive.

9 technology Information Genbank sequence data archive.

10 g data were obtained from the Cancer Imaging Archive.

11 g challenges to data storage, management and archive.

12 es from 884 series in the NCBI Sequence Read Archive.

13 tlas (TCGA), and the European Genome-Phenome Archive.

14 nclude new features such as the Geis Digital Archive.

15 itous and geologically extensive sedimentary archive.

16 le due to the large number of samples in the archive.

17 ond the reach of most lacustrine and glacial archives.

18 mit their nucleotide data reliably to public archives.

19 of Holocene climate change across a range of archives.

20 r authors to submit their data to the public archives.

21 d analysis of historical reports and natural archives.

22 s, as well as the magnitude of enrichment in archives.

23 grate structural data from a range of public archives.

24 s as recorded in high precision paleoclimate archives.

25 ists, or collected from public sequence data archives.

26 rvation, sequencing, bioinformatics and data archiving.

27 in disease, and thus, virtual pathology and archiving.

28 tissue stored at -80 degrees C, making brain archives accessible for RNA-seq from individual neurons.

29 (NS1)-specific MAC-ELISA (NS1-MAC-ELISA) on archived acute-phase serum specimens from patients with

30 d its stable carbon isotopes from ice cores, archived air, and a global network of monitoring station

31 the National Cancer Institute Cancer Imaging Archive, along with clinical, histopathologic, and genom

32 ent includes providing a variant-centric XML archive and a web page for details of SCV submissions.

33 -6.5), 2846 patients from European Variation Archive and Exome Aggregation Consortium data (2.4%; 95%

34 .2) than frequencies from European Variation Archive and Exome Aggregation Consortium data (2134 of 1

35 When a modified SARAMIS (Spectral Archive and Microbial Identification System) database wa

36 developers to more effectively mine the PDB archive and related annotations.

37 tructures available in the Protein Data Bank archive and the tools that are available at the RCSB web

38 ed screening methods, where data sets can be archived and retrospectively mined as new environmental

39 ures: (i) large-scale and comprehensive data archives and analyses, including coding-transcript profi

40 lpine regions, glaciers act as environmental archives and can accumulate significant amounts of atmos

41 dent lines of observation, including natural archives and direct measurements of present-day environm

42 molecular structure data in the PDB and EMDB archives and enriches, integrates and disseminates struc

43 cold periods recorded in terrestrial climate archives and historical records over the last 3000 years

44 ilitary medical units housed in the National Archives and other repositories in addition to consultin

45 ch platform for data sharing, publishing and archiving and a globally comprehensive data set for onwa

46 se (PMD), which is specifically designed for archiving and analyzing protein microarray data.

47 imitations in glycan generation and promotes archiving and characterization of human and animal glyco

48 HIPAA-compliant retrospective study, picture archiving and communication systems of two tertiary refe

49 perplastic polyps, obtained from the picture archiving and communications system database in a tertia

50 odalities were sent by an EMR-linked picture-archiving and communications system to the respective de

51 ever, there is no centralized repository for archiving and making these data and associated tools for

52 We show how archiving and mining of intraoperative hemodynamic data

53 acquired aquatolide spectra demonstrate that archiving and rigorous interpretation of 1D (1)H NMR dat

54 (neurologic departments, hospital discharge archives, and mortality records).

55 etained for future generations in libraries, archives, and museums.

56 In conclusion, LEC-archived antigens are exchanged with migratory DCs, both

57 Here we show that the exchange of archived antigens between LECs and APCs is mediated by m

58 chival, yet LECs are unable to present their archived antigens to CD8(+) T cells, and instead transfe

59 and through LEC apoptosis, to cross-present archived antigens to circulating T cells.

60 novel families, genera and species that were archived as pure cultures.

61 structure data available in the PDB and EMDB archives as well as value-added annotations, e.g. regard

62 metadata, quality information, and links to archived assay data.

63 Searching sequence archives at this scale and in this time frame is current

64 Molecular characterization of archived B. pertussis isolates (collected January 2007 t

65 We tested archived BAL fluid samples from 132 HCT recipients with

66 sis, we assessed ESR1 mutations in available archived baseline plasma from the SoFEA (Study of Faslod

67 o bioavailability methodology was applied to archived BHSS soil and dust samples.

68 By measuring entire classes of chemicals in archived biospecimens, exposome-wide association studies

69 seline sleep duration was self-reported, and archived blood samples were used to assess concentration

70 We extracted DNA from archived blood smears and corresponding red blood cell p

71 Studies in monozygotic twins and archived blood spots have provided compelling evidence o

72 e profile 39,111 nuclei from mouse and human archived brain samples to demonstrate sensitive, efficie

73 eflective foci was identified in a pathology archive by ex vivo OCT and was studied with high-resolut

74 data sets demonstrates that the information archived by SBDG is sufficient to reprocess data to stat

75 or alveolar canal (IAC) as it appears in the archived CBCT images of the mandible.

76 more than 5 years as a public repository for archiving circular dichroism spectroscopic data and asso

77 ly uncovering ultrastructural information of archived clinical samples, which may offer molecular ins

78 However, RNAs extracted from the archived clinical tissues are often substantially degrad

79 broadly screen for DNA sequence variants in archived, clinical-grade tumor specimens.

80 Interventions: Tumor profiling performed on archived clinically acquired specimens consisted of muta

81 An archived collection of 200 clinical Acinetobacter sp. is

82 An archived collection of 200 clinical Acinetobacter sp. Pr

83 Material in 2 major archived collections at the University of Wisconsin medi

84 andem MS spectra publicly available in PRIDE Archive, coming from hundreds of datasets, we were able

85 PRIDE Archive constitutes a complete redevelopment of the orig

86 results establish that isotopomers of plant archives contain metabolic information covering centurie

87 Public archives contain thousands of trillions of bases of valu

88 KODAMA is freely available from the R archive CRAN.

89 lmnet package is freely available from the R archive CRAN.

90 >8,000 incidental mutations have been sperm archived, creating a rich public resource for human dise

91 outline some statistics on the current PRIDE Archive data contents.

92 Archive data further show when non-therapeutic antibioti

93 f Dresden (Saxony, Germany), and all locally archived data from phase 3 trials of direct oral factor

94 Because of the high-quality archived data, DIA selectivities were better than tradit

95 Retrospectively, using archived data, we looked at longitudinal tumour volume d

96 reproducibility and reducing the utility of archived data.

97 ection forms; and abstracting, managing, and archiving data for systematic reviews.

98 Storing, transmitting and archiving data produced by next-generation sequencing is

99 DNA is an excellent medium for archiving data.

100 pertension (RVH) were randomly selected from archived databases and were independently scored by thre

101 ic CH4 ((13)C/(12)C and D/H) from a rare air archive dating from 1977 to 1998.

102 formed from January 2013 to March 2015 using archived, deidentified, formalin-fixed, paraffin-embedde

103 Here we describe a novel palaeoclimate archive derived from the surface morphology and internal

104 analysis of a randomized clinical trial used archived DNA samples and cancer family history of 315 pa

105 this article, we describe the Digital Slide Archive (DSA), an open-source web-based platform for dig

106 otide Archive (ENA), European Genome-phenome Archive (EGA), ArrayExpress and PRoteomics IDEntificatio

107 cular Biology Laboratory European Nucleotide Archive (EMBL-ENA) and Kabat as well as structure data f

108 y data exchange with the European Nucleotide Archive (ENA) and the DNA Data Bank of Japan (DDBJ) ensu

109 y data exchange with the European Nucleotide Archive (ENA) and the DNA Data Bank of Japan (DDBJ) ensu

110 archives, including the European Nucleotide Archive (ENA), European Genome-phenome Archive (EGA), Ar

111 age control on existing terrestrial climate archives, especially in the Southern Hemisphere, and by

112 isotopic compositions (delta(114/110)Cd) of archived fertilizer and soil samples from a 66 year-long

113 ms of clinical diagnosis and prognosis using archived FFPE tissue.

114 lized proteomics using very small amounts of archived FFPE tissue.

115 Archived FIDs and newly acquired aquatolide spectra demo

116 190 patients with diffuse gliomas, including archived fixed and frozen specimens and tissue obtained

117 Ligandbook is a public database and archive for force field parameters of small and drug-lik

118 ed two new resources: the European Variation Archive for genetic variation data and EMPIAR for two-di

119 ogy Information (NCBI) is a freely available archive for interpretations of clinical significance of

120 annotated and displayed, and outputs can be archived for sharing or backup.

121 The approach searches large data archives for all experiments that involve a given sequen

122 Here, we present CARGO (Compressed ARchiving for GenOmics), a high-level framework to autom

123 ify all classes of genomic alterations using archived formalin-fixed paraffin-embedded blood and bone

124 Millions of archived formalin-fixed, paraffin-embedded (FFPE) specim

125 Using archived formalin-preserved plankton samples collected b

126 l and palynological proxies to a sedimentary archive from the lake over the penultimate glacial-inter

127 it a PDB identification code or select a PDB archive from their local disk, and Web3DMol will display

128 d to inflammation and cardiovascular disease archived from a phase 3 clinical trial of tofacitinib an

129 dried blood spot (DBS) and plasma specimens archived from participants in the Peninsula AIDS Researc

130 are then validated and permanently linked to archived genetic data stored in the National Center for

131 The peatland archive has become a prominent line of evidence for sola

132 Natural archives have been used to reconstruct mercury atmospher

133 ovative reinterpretations of existing fossil archives have fundamentally altered a decades-old consen

134 imated from carbon isotope discrimination in archived herbage samples from 16 contrasting fertilizer

135 The Human Genome Variation Archive (HGVA) tackles these challenges and facilitates

136 Case detection was performed based on archived histopathology samples and M. chimaera isolates

137 For other geological archives, however, the shorter intervals are not determi

138 agated isolates, we analyzed a collection of archived human and animal isolates of these three specie

139 types and revealing cellular diversity, but archived human brain samples still pose a challenge to c

140 mistry analysis of sections from 21 cases of archived human OSCC tissues showed immunoreactivity for

141 The CASABLANCA Study: Catheter Sampled Blood Archive in Cardiovascular Diseases; NCT00842868).

142 f atoms in a web browser, keep the whole PDB archive in memory or parse it within few minutes on aver

143 assess the vast amount of valuable germplasm archived in 1,750 gene banks.

144 from early- to mid-gestation serum specimens archived in a national biobank.

145 quantitative outputs that can be stored and archived in public databases, and it represents a step t

146 tein modifications observed in 3D structures archived in the Protein Data Bank (PDB).

147 , only a handful of XNA structures have been archived in the Protein Data Bank as compared to the mor

148 Brain specimens had been archived in tissue banks in the USA.

149 (th) to 19(th) Centuries, and correspondence archives, in search of earlier documents that could have

150 ta are deposited in the appropriate EMBL-EBI archives, including the European Nucleotide Archive (ENA

151 and palaeontological evidence from the same archive indicate that significant biotic recovery did no

152 Using archived infrared data, it is shown that the molecular g

153 r AMD in a referral practice and a pathology archive is 5% to 7%.

154 The European Nucleotide Archive is a repository for the submission, maintenance

155 The PDB archive is available in MMTF file format through web ser

156 The molluscan archive is dominated by extremophile taxa, including tho

157 More than 40% of the Sequence Read Archive is human data protected by provisions such as db

158 PRoteomics IDEntifications database (PRIDE) Archive is one of the largest MS proteomics public data

159 Since the beginning of 2014, PRIDE Archive is the new PRIDE archival system, replacing the

160 ssful hydrothermal syntheses--collected from archived laboratory notebooks from our laboratory, and a

161 Bank, the US data center for the global PDB archive, makes PDB data freely available to all users, f

162 enatal nicotine exposure (cotinine level) in archived maternal sera and schizophrenia in offspring fr

163 a, a nested case-control study that included archived maternal sera from virtually all pregnancies si

164 chloroethylene (p,p'-DDE) were quantified in archived maternal serum drawn in gestational week 30 (n

165 s methodology will facilitate re-analysis of archived microarray data and broaden the utility of the

166 This exploratory study used the Danish archived midgestational sera and their nationwide regist

167 ikely BPA and butyl paraben contamination of archived MoBa urine specimens.

168 4 sites in North Carolina was based on state-archived monitoring well data.

169 rospectively collected (n = 914) and frozen, archived (n = 489) fecal specimens.

170 Reference intervals were established using archived, neonatal DBS (n = 501) and a median of 130.6 n

171 freely available through the Comprehensive R Archive Network (CRAN), for Linux, Mac OS and Windows pl

172 le for installation from the Comprehensive R Archive Network (CRAN).

173 lgorithm is available on the Comprehensive R Archive Network (CRAN).

174 hich is now available at the Comprehensive R Archive Network repository.

175 l is freely available on the Comprehensive R Archive Network under the GPL-2 license.

176 nd can be installed from the Comprehensive R Archive Network, CRAN.

177 d can be downloaded from the Comprehensive R Archive Network.

178 ssess the underlying biology by compiling an archive of 684 genes discovered in studies of monogenic

179 Reactome functions both as an archive of biological processes and as a tool for discov

180 s retrospectively collected from a radiology archive of CT examinations of the head performed from 19

181 in continental shelf sediments, the primary archive of faunal data.

182 We used an archive of geochemical data collected from 1988 to 2014

183 SecReT6 offers a unique, readily explorable archive of known and putative T6SSs, and cognate effecto

184 ecord can potentially provide a quantitative archive of long-term ecological responses to past climat

185 sequences can be regarded as both a genomic archive of past infections and as an armour of potential

186 nt of the global carbon cycle, and record an archive of past oceanographic conditions in their geoche

187 sera from a recently available, well-defined archive of positive- and negative-control patients.

188 An archive of pre-computed domain annotation is maintained

189 nd contribute to the development of a robust archive of skin images to be used for research.

190 g clinical laboratories in ClinVar, a public archive of variant classifications (315/695 variants; 45

191 Ice cores are high-resolution archives of atmospheric deposition that may provide cruc

192 ciers in this region serve as unique natural archives of bacterial abundance and community compositio

193 This realization triggered a journey into archives of botanical texts, herbals and florilegia from

194 vulvar SCCs (n = 23) were retrieved from the archives of Brigham and Women's Hospital and included in

195 reduce the capacity of landscapes to provide archives of climate change.

196 The long forgotten Archives of Clinical Surgery provides a unique window in

197 1853-1922) and his founding, in 1876, of the Archives of Clinical Surgery, the nation's first surgica

198 Bermingham and the Archives of Clinical Surgery.

199 February 2011 issue of JAMA Psychiatry (then Archives of General Psychiatry), there were 2 errors.

200 the focus of resurgent interest as potential archives of genomic data and for the unique perspective

201 characterize such changes and paleo-sediment archives of Holocene TC activity are temporally and geog

202 gdom) represents one of the most influential archives of human response to the changing climate at th

203 pollution is restricted to a few geological archives of low temporal resolution that record trace el

204 ed after a retrospective analysis of medical archives of our hospital.

205 arbon stores and habitats, and are important archives of past climatic and ecological information.

206 were retrieved from the pathology department archives of Rambam Health Care Campus, Haifa, Israel.

207 the American College of Surgeons, Endoscopy, Archives of Surgery, and Liver transplantation), publish

208 n autopsy-confirmed diagnosis of PD from the archives of the Queen Square Brain Bank in London, Unite

209 a freely available hub for the analysis and archiving of metagenomic and metatranscriptomic data.

210 he last few years has led to the large-scale archiving of sequencing data.

211 The European Nucleotide Archive offers a rich platform for data sharing, publish

212 Interpretations of palaeoclimate proxy archives often suggest hemispherically coherent variatio

213 es and is transferred to aquatic sedimentary archives on subdecadal to millennial time scales.

214 to perform multiplexed immunofluorescence on archived or clinical tissue specimens.

215 Archived paired serum specimens (n = 1234) from patients

216 nish National Pathology Registry to identify archived paraffin-embedded tissue blocks from 57 Parkins

217 Archived pathologic samples from the patient's primary b

218 al from FFPE tissue clear the way for use of archived pathology samples in molecular epidemiology stu

219 Testing was performed on 773 archived patient specimens.

220 Policies that mandate public data archiving (PDA) successfully increase accessibility to d

221 Further study of archived PDNS tissue samples that were negative for PCV2

222 integration, knowledge-translation, and data archiving phases of CAN-BIND projects.

223 Although many studies have utilized archived plasma for miRNA biomarker discovery, the effec

224 peline to characterize 43 adduct features in archived plasma from healthy human subjects and found se

225 nosing severe falciparum malaria on fresh or archived plasma samples.

226 s clinical studies of extracellular miRNA in archived plasma should be interpreted with caution and f

227 In a case-control study of archived plasma, we noted a significant correlation betw

228 The repository archives plasmids generated by scientists, conducts qual

229 mework for creating, testing, versioning and archiving portable applications for analyzing neuroimagi

230 As an environmental archive, Posta Fibreno offers a temporal resolution whic

231 ects) who received an allogeneic HCT and had archived pre-HCT peripheral blood mononuclear cell sampl

232 moter methylation data were acquired from an archived primary Korean melanoma cohort (KMC) of 158 pat

233 eral Last Glacial pollen and rare speleothem archives principally located in the Mediterranean domain

234 000 individual BMD data points on a typical archived prosthetic hip scan.

235 f randomized clinical trials (RCTs) based on archived protocols approved by six research ethics commi

236 Archived public data sets are an invaluable resource for

237 ted by self-reports and the Finnish National Archives registry, respectively.

238 rally handles the potential inconsistency in archived regulatory relationships and conditioning can b

239 pplications of our approach to FASTQ and SAM archives require a few lines of code, produce solutions

240 ce runs deposited in the European Nucleotide Archive respectively.

241 y maternal deprivation (peer-rearing, PR) in archived rhesus macaque hippocampal samples (male, n = 1

242 We used the Internet Archive's Wayback Machine to approximate 'death dates' a

243 f archaeological bones and historical museum-archived salmon scales to show that the original salmon

244 nol F (BPF), and bisphenol AF (BPAF), in 616 archived samples collected from convenience samplings of

245 The measurement of extracellular miRNAs in archived samples is critically dependent on the removal

246 infections or for epidemiological studies of archived samples.

247 omparing 2013 or 2014 fish samples with 2011 archived samples.

248 We used archived satellite imagery collected from January 2010 t

249 of Controlled Trials, and the CAB Abstracts Archive searchable database were searched from the incep

250 hant Island (61.1 degrees S) as paleoclimate archives sensitive to regional temperature change, moder

251 olutionarily relevant metadata with publicly archived sequence data in a structured manner, GeOMe set

252 were conducted on 3698 swine sera, including archive sera collected in 2009, as well as samples colle

253 alence of IDV antibody titers (11.7%), while archive sera from 2009 showed statistically significant

254 cination or GI.1 infection, as measured from archived sera.

255 In archived serial blood samples collected from 14 patients

256 ons in 88 recultured MDR-TB isolates from an archived series collected in 2001.

257 Archived serum samples collected as part of an ongoing p

258 pes simplex virus type 1 (HSV-1) measured in archived serum samples.

259 ts of a user's session, allowing the user to archive, share and reproduce the sequence of steps that

260 Using qPCR and soils archived since 1923 at Askov Experimental Station in Den

261 n a simultaneous effort to help organize and archive some of the vast quantities of sequencing data t

262 NADH dehydrogenase subunit 2 (ND2), from 383 archived specimens from 43 localities were determined fo

263 as performed on tumor DNA extracted from the archived specimens of 5 patients with CM who had been tr

264 The Sequence Read Archive (SRA) contains raw data from many different type

265 The NCBI's Sequence Read Archive (SRA) promises great biological insight if one c

266 human RNA-seq samples from the Sequence Read Archive (SRA) to the human genome and compared detected

267 hnology Information's (NCBI's) Sequence Read Archive (SRA) via unique persistent identifiers.

268 e Expression Omnibus (GEO) and Sequence Read Archive (SRA).

269 agenomic samples from the NCBI Sequence Read Archive, suggesting 2- to 4-fold compression ratio impro

270 PRIDE Archive supports the most-widely used PSI (Proteomics St

271 and private practices worldwide contributed archived TAs from individuals older than 50 years.

272 (TCGA) with MRI data from The Cancer Imaging Archive (TCIA) for 91 breast invasive carcinomas.

273 arctica, in contrast to most other Antarctic archives that favour eccentricity-paced forcing over the

274 culty of locating and interrogating suitable archives that have the potential to preserve such inform

275 analyzing RNA-Seq data in the Sequence Read Archive, that together have allowed us to build an easil

276 ChimerSeq module is designed to archive the fusion candidates from deep sequencing data.

277 y of acquiring, recording, interpreting, and archiving the pressure tracings for daily practice and f

278 The list was archived, then we randomly assigned clusters (1:1) to ei

279 his technique we microdissected neurons from archived tissue blocks of the temporal cortex from patie

280 our method for retrieval of DNA adducts from archived tissue by measuring DNA adducts derived from fo

281 neration sequencing (ChIP-seq) analysis from archived tissue samples.

282 ically relevant pTyr signaling networks from archived tissue specimens.

283 When available, archived tissue was evaluated for aberrations in the PI3

284 issues opening up further avenues for use of archived tissue.

285 e we use the Laptev Sea (Arctic Ocean) as an archive to investigate PF-C destabilization during the l

286 des and >90 transformation products (TPs) in archived topsoil samples from the Swiss Soil Monitoring

287 In archived triple-negative breast cancer samples, we show

288 peutic inhibition of putative targets in VS, archived tumor specimens, fresh tumor cells derived from

289 de technique was used to measure fluoride in archived urine samples taken from mothers during pregnan

290 q runs in 264 species in European Nucleotide Archive, using Representational State Transfer.

291 However, exchange of archived viral antigens is mediated only by BatF3-depend

292 The PRIDE Archive web services were first made available in April

293 Gramene's archive website continues to provide previously reported

294 erials and Methods MR images from a clinical archive were used and data were deidentified.

295 rmatic tools and associated interactive data archives, which enable sophisticated comparative genomic

296 of the rapidly growing 3DEM structural data archives, which include maps in EM Data Bank and map-der

297 RNA-seq data have been submitted to ENA archive with project ID PRJEB5348.

298 31, 2009, were obtained from Yale Pathology Archives with a range of expression of PD-L1.

299 31, 2009, were obtained from Yale Pathology Archives with a range of expression of PD-L1.

300 imple steatosis from the Royal Free Hospital Archives with both clinical data and sufficient material