1 GppFst
is available at.
2 The Proteins API
is available at.
3 In 66 patients, UACR measures
were available at 1 year.
4 Sixty-five eyes were enrolled, and 55
were available at 12M, accounting for loss to follow-up
5 Measured weight and height
were available at 13 time points throughout childhood.
6 ts treated, data from 94 eyes of 88 patients
were available at 2-year follow-up (86% of patients).
7 all 24 months of the study and serum samples
were available at 24 months from 18/28 patients.
8 Ponseti treatment of clubfoot
was available at 46% (95% 38.8-53.2) of district hospita
9 At least 1 cessation medicine
was available at 63% of private pharmacies (n=109) and 2
10 Dietary energy and macronutrient intakes
were available at 7 time points.
11 ral steps depending on what cellular factors
are available at a given time point.
12 HCT services have also
been available at a government-run health centre and at
13 animetry and peak GLS by 2D speckle tracking
were available at admission in 115 of 149 (77%) patients
14 ed on geographical covariates for which data
are available at all study participant locations.
15 education, ensuring that disclosure coaching
is available at all times, and providing emotional suppo
16 a representative marker for thymic function,
was available at baseline and at 12, 24, and 48 weeks po
17 Evaluable imaging data
were available at baseline and follow-up for 458 partici
18 RankProd 2.0
is available at Bioconductor and as part of the mzMatch
19 kage containing examples and sample datasets
is available at Bioconductor.
20 is provided as a Bioconductor R Package and
is available at bioconductor.org/packages/pandaR.
21 Supplementary data
are available at Bioinformatics online
22 Code and documentation
are available at Bioinformatics online.
23 supplementary data
are available at Bioinformatics online.
24 a files for the proposed method and examples
are available at Bioinformatics online.
25 Supplementary data
are available at Bioinformatics online.
26 UPPLEMENTARY INFORMATION: supplementary data
are available at Bioinformatics online.
27 Supplementary materials
are available at Bioinformatics online.
28 UPPLEMENTARY INFORMATION: Supplementary data
are available at Bioinformatics online.
29 Supplementary data
are available at Bioinformatics online.
30 Software and supplementary data
are available at Bioinformatics online.
31 UPPLEMENTARY INFORMATION: Supplementary data
are available at Bioinformatics online.
32 Supplementary data
are available at Bioinformatics online.
33 Supplementary data
are available at Bioinformatics online.
34 Supplementary data
are available at Bioinformatics online.
35 Supplementary date
are available at Bioinformatics online.
36 harts and example figures for each pipeline,
are available at Bioinformatics online.
37 l the datasets and code used in this article
are available at bioinformatics.cise.ufl.edu/PReach/scal
38 Supplementary Material
is available at Bioinformatics online.
39 Supplementary material
is available at Bioinformatics online.
40 SUPPLEMENTARY INFORMATION
is available at Bioinformatics online.
41 Supplementary material
is available at Bioinformatics online.
42 Supplementary file
is available at Bioinformatics online.
43 latest stable version of the web application
is available at biopax.org/validator.
44 Acceptable echocardiograms
were available at both time points in 240 subjects (114
45 d, appropriate therapy for allergic diseases
is available at comparatively low costs at an average of
46 Availability: Software
is available at compbio.cs.brown.edu/software.
47 Software
is available at compbio.cs.brown.edu/software.
48 R package iJRF
is available at CRAN.
49 cribing choices when comparable alternatives
are available at different costs.
50 d evaluate its cost-effectiveness if WES had
been available at different time points in their diagnos
51 ormation, videos, tutorials, and sample data
are available at dmri.slicer.org Cancer Res; 77(21); e10
52 Our software (FISHtrees) and two datasets
are available at ftp://ftp.ncbi.nlm.nih.gov/pub/FISHtree
53 for the interface and an example REST client
is available at ftp://ftp.thegpm.org/repos/gpmdb_rest
54 The results of the method
are available at:
ftp://ftp.ebi.ac.uk/pub/contrib/martin
55 The VM
is available at:
ftp://ftp.ebi.ac.uk/pub/databases/chemb
56 compiled binaries (Linux, Mac OS/X, Windows)
are available at github.com/aresio/cupSODA (requires an
57 VariantBam and full documentation
are available at github.com/jwalabroad/VariantBam
58 The Decombinator package
is available at github.com/innate2adaptive/Decombinator
59 R code
is available at github.com/james-e-barrett.
60 ARTS is implemented in Perl and
is available at github.com/mmaiensc/ARTS.
61 GeneCodeq
is available at:
github.com/genecodeq/eval
62 The database
is available at hive.biochemistry.gwu.edu/review/codon .
63 The source code and experimental data sets
are available at http://alan.cs.gsu.edu/NGS/?q=content/p
64 ations of the algorithms applied by team AMG
are available at http://bhanot.biomaps.rutgers.edu/wiki/
65 associations and predicted gene annotations
are available at http://bio-nets.doc.ic.ac.uk/GO-Reconst
66 used to develop and validate the classifier
are available at http://bioinformatics.mdanderson.org/MO
67 of association tests, examples and tutorials
are available at http://bioinformatics.org/spower.
68 mentation of the approach of Teams 49 and 75
are available at http://bioinformaticsprb.med.wayne.edu
69 guide documents and many biological examples
are available at http://bioinformaticstools.mayo.edu.
70 Software and user manual
are available at http://bioinformaticstools.mayo.edu/res
71 line for Sun Grid Engine and virtual machine
are available at http://bioinformaticstools.mayo.edu/res
72 The software and user manual
are available at http://bioinformaticstools.mayo.edu/res
73 All articles
are available at http://biolinksig.org/proceedings-onlin
74 etwork generation and the resulting networks
are available at http://bionerds.sourceforge.net/network
75 BWA-MEM alignment and raw variant calls
are available at http://bit.ly/1g8XqRt scripts and misce
76 ource code, documentation and issue tracking
are available at http://bitbucket.org/hgvs/hgvs/.
77 R code and two example datasets
are available at http://cals.arizona.edu/ approximately
78 as source code for our front-to-end pipeline
are available at http://cat.princeton.edu.
79 , binaries, user manual and example datasets
are available at http://cbrc.kaust.edu.sa/svamp.
80 T's source code, documentation and tutorials
are available at http://code.google.com/p/genomic-associ
81 code and data files for the proposed method
are available at http://comp-sysbio.org/miR_Path/ SUPPLE
82 hon and MATLAB implementations of our method
are available at http://compbio.cs.brown.edu/software/ .
83 Squeezambler and datasets
are available at http://compbio.cs.wayne.edu/software/sq
84 B package 'exomePeak' and additional details
are available at http://compgenomics.utsa.edu/exomePeak/
85 M files for the PL alignment method
are available at http://compgenomics.utsa.edu/zgroup/Pea
86 documentation, tutorial and example datasets
are available at http://coruscant.itmat.upenn.edu/mr_pre
87 All the data and scripts used in the work
are available at http://dlab.clemson.edu/research/Sulfat
88 q, including documentations and executables,
are available at http://dlin.web.unc.edu/software/.
89 ctions and tools for preparing methylC track
are available at http://epigenomegateway.wustl.edu/+/cmt
90 tion and a complete set of sample data files
are available at http://faculty.www.umb.edu/jennifer.bow
91 Examples and additional materials
are available at http://gdac.broadinstitute.org/nozzle.
92 utable as well as sample datasets and manual
are available at http://genome.cs.iastate.edu/CBL/MulRF/
93 d in Java, with visualization routines in R)
are available at http://github.com/whitehead/plaac under
94 models and kernels accounting for censoring
are available at http://icb.helmholtz-muenchen.de/censgp
95 The source code and documentations
are available at http://jordan.biology.gatech.edu/page/s
96 Online supplementary data
are available at http://lcb.infotech.monash.edu.au/I-val
97 Scripts created for the experimentation
are available at http://m4m.ugr.es/SupInfo/sRNAOS/sRNAOS
98 Source code and detailed documentation
are available at http://montgomerylab.stanford.edu/splic
99 MATLAB code, raw and preprocessed LC-MS data
are available at http://omics.georgetown.edu/alignLCMS.h
100 The web server and sources
are available at http://ppopen.rostlab.org.
101 All such materials
are available at http://questfororthologs.org.
102 The predicted genes
are available at http://rgd.mcw.edu.
103 Software and Supplementary information
are available at http://sb.cs.cmu.edu/smarts/.
104 The resources generated in this study
are available at http://server.cs.ucf.edu/predrem/.
105 Source code and accompanying Python scripts
are available at http://shendurelab.github.io/MIPGEN/.
106 distributed under GPL) and binaries for OS X
are available at http://sourceforge.net/projects/ceiba.
107 Binary executables
are available at http://sourceforge.net/projects/hitsele
108 The programs
are available at http://stat.fsu.edu/ approximately jinf
109 The annotated corpus and software
are available at http://www.cl.cam.ac.uk/ approximately
110 AZ classifier and the two novel applications
are available at http://www.cl.cam.ac.uk/yg244/12bioinfo
111 Python source code for MCMC-based inference
are available at http://www.cs.duke.edu/ approximately a
112 Datasets studied in this article
are available at http://www.cs.utexas.edu/users/phylo/da
113 All data and code
are available at http://www.cse.usf.edu/~xqian/fmi/slcp2
114 Binaries and documentation
are available at http://www.dynameomics.org/DIVE/DIVESet
115 bryonic stem cells whole-cell SELEX-Seq data
are available at http://www.morgridge.net/Aptamer/.
116 MPBind software and documents
are available at http://www.morgridge.net/MPBind.html.
117 The PIP-DB database and documentation
are available at http://www.pip-db.org.
118 phaMPSim for Mac and Linux and a user manual
are available at http://www.roslin.ed.ac.uk/john-hickey/
119 R codes for SALPS
are available at http://www.stanford.edu/%7eclairesr/sof
120 R files, including documentation, examples,
are available at http://www.unc.edu/~yunmli/betaseq
121 n of the proposed computational methods will
be available at http://research.ics.aalto.fi/csb/softwar
122 The App Store
is available at http://apps.cytoscape.org.
123 The GRASP database
is available at http://apps.nhlbi.nih.gov/grasp.
124 Badger is released under the GPL and
is available at http://badger.bio.ed.ac.uk/.
125 UNDO
is available at http://bioconductor.org/packages.
126 It
is available at http://bioconductor.org/packages/release
127 RNAiFold
is available at http://bioinformatics.bc.edu/clotelab/RN
128 The source code of ASP-G
is available at http://bioinformatics.intec.ugent.be/kma
129 The program, MCMG, implemented in R
is available at http://bioinformatics.med.yale.edu/group
130 Software MLRR in MATLAB
is available at http://biostatistics.csmc.edu/mlrr/.
131 A video tutorial
is available at http://bit.ly/TCGARoadmapTutorial.
132 ware distributed under the GPLv3 license and
is available at http://bowhan.github.io/piPipes/.
133 A free C++ implementation of cosi2
is available at http://broadinstitute.org/mpg/cosi2.
134 Python implementation of the proposed method
is available at http://cbio.ensmp.fr/pastis.
135 loring all vulnerabilities and their details
is available at http://cbio.mskcc.org/cancergenomics/sta
136 The CBO, developed using Protege 4,
is available at http://cbo.biocomplexity.indiana.edu/cbo
137 An implementation of our method
is available at http://compbio.mit.edu/treefix-dtl/
138 g a downloadable structure learning package,
is available at http://compbio.uthsc.edu/BNW.
139 CRISPR-GA Web
is available at http://crispr-ga.net.
140 Software implementing our methods
is available at http://deweylab.biostat.wisc.edu/psginfe
141 DRD
is available at http://drd.denison.edu.
142 The tool
is available at http://encodeqt.stanford.edu.
143 The source code
is available at http://epigenome.cbrc.jp/bisulfighter.
144 Free download of Census 2 for academic users
is available at http://fields.scripps.edu/census/index.p
145 Publicly available software
is available at http://genetics.cs.ucla.edu/harsh
146 ing source code, documentation, and examples
is available at http://genome.sph.umich.edu/wiki/Minimac
147 Source code
is available at http://github.com/biolab/red.
148 together with instructions for installation
is available at http://github.com/IlincaTudose/OntoQuery
149 The subSeq R package
is available at http://github.com/StoreyLab/subSeq/.
150 The installation with the glycan standards
is available at http://glycomics.ccrc.uga.edu/eurocarb/.
151 Source code
is available at http://guanlab.ccmb.med.umich.edu/DREAM/
152 The network described in this article
is available at http://guanlab.ccmb.med.umich.edu/stageS
153 inked Glycosylation Site Analyzer web server
is available at http://hivtools.publichealth.uga.edu/N-G
154 Software
is available at http://mezeylab.cb.bscb.cornell.edu/Soft
155 ORMAN
is available at http://orman.sf.net
156 R code with instructions and examples
is available at http://people.duke.edu/%7Eel113/software
157 The FAT-CAT web server
is available at http://phylogenomics.berkeley.edu/phylof
158 An implementation in R
is available at http://research.ics.aalto.fi/mi/software
159 ROSIE
is available at http://rosie.rosettacommons.org.
160 Source code
is available at http://smithlabresearch.org/preseq.
161 cnvOffSeq
is available at http://sourceforge.net/p/cnvoffseq/.
162 ython and C) for the Linux and Mac platforms
is available at http://sourceforge.net/projects/quikr/.
163 Source code
is available at http://sourceforge.net/projects/staden/f
164 DiMO
is available at http://stormo.wustl.edu/DiMO
165 A web server
is available at http://structure.bioc.cam.ac.uk/mcsm.
166 XenoSite server
is available at http://swami.wustl.edu/xenosite.
167 The UniPROBE database
is available at http://uniprobe.org.
168 Tedna
is available at http://urgi.versailles.inra.fr/Tools/Ted
169 e software is implemented in R, and the code
is available at http://verenastarke.wordpress.com or by
170 has been implemented as web application and
is available at http://www.bioinsilico.org/FRAGRUS.
171 kage containing examples and sample datasets
is available at http://www.biostat.wisc.edu/kendzior/EBS
172 SNPsnap server
is available at http://www.broadinstitute.org/mpg/snpsna
173 Code
is available at http://www.cs.cmu.edu/ approximately sak
174 ware for both C++ version and Matlab version
is available at http://www.cs.unc.edu/ approximately wei
175 The software
is available at http://www.csbio.unc.edu/rs.
176 The web interface of EcoGene-RefSeq
is available at http://www.ecogene.org/refseq.
177 and detailed protocol of the layer approach
is available at http://www.egr.msu.edu/changroup/Protoco
178 The LCB application
is available at http://www.maayanlab.net/LINCS/LCB.
179 lection of sets from the HomoloGene database
is available at http://www.ncbi.nlm.nih.gov/CBBresearch/
180 rce Web-based logo generation program, which
is available at http://www.ncbi.nlm.nih.gov/CBBresearch/
181 The web server
is available at http://www.rostlab.org/services/loctree3
182 An R package to estimate optimal window size
is available at http://www1.maths.leeds.ac.uk/ approxima
183 user manual, example files and documentation
are available at:
http://apps.cytoscape.org/apps/cytohic
184 Code and Data
are available at:
http://bonneaulab.bio.nyu.edu/funcprop
185 All the codes
are available at:
http://gsp.tamu.edu/Publications/suppl
186 The predictions and code
are available at:
http://www.cs.cmu.edu/ approximately m
187 Matlab code and examples
are available at:
http://www.csb.ethz.ch/tools/index
188 C++, along with the Supplementary Materials,
is available at:
http://gsp.tamu.edu/Publications/supple
189 All data and source code
are available at https://cbcl.ics.uci.edu/public_data/DA
190 Scripts used to perform our analysis
are available at https://github.com/d-quinn/bio_quinn201
191 Source code, documentation, and tutorials
are available at https://github.com/fizquierdo/perpetual
192 ons for binary classification and regression
are available at https://github.com/mehmetgonen/kbmtl.
193 The software and source
are available at https://github.com/optimusmoose/JAMSS.
194 A tutorial and further information
are available at https://sourceforge.net/p/rpore/wiki/Ho
195 VCF2Networks
is available at https://bitbucket.org/dalloliogm/vcf2net
196 The source code of the project
is available at https://code.google.com/p/ucdb/.
197 mplementation of CAC using standard packages
is available at https://gist.github.com/programeng/8620b
198 Source code
is available at https://github.com/chembl/pfam_map_loade
199 under the MIT license, and open source code
is available at https://github.com/danmaclean/bioruby-sv
200 net/projects/hitselect/, and the source code
is available at https://github.com/diazlab/HiTSelect.
201 The source code
is available at https://github.com/JulienLajugie/GenPlay
202 The documentation
is available at https://github.com/loopasam/Brain/wiki.
203 The R code of the method
is available at https://github.com/ORCABioinfo/ORCAcode.
204 .iastate.edu/CBL/MulRF/, and the source code
is available at https://github.com/ruchiherself/MulRFRep
205 Our software
is available at https://github.com/tknijnen/msr/.
206 MIG
is available at https://mig.molbiol.ox.ac.uk/mig/
207 The PPDMs resource and curation interface
is available at https://www.ebi.ac.uk/chembl/research/pp
208 The web interface and web services code
is available at:
https://github.com/rochoa85/myChEMBL.
209 Museum records and historic data can
be available at large scales across multiple decades, an
210 tives to deliver mealtime assistance, whilst
being available at mealtimes to support patients with co
211 The MetaSRA
is available at metasra.biostat.wisc.edu via both a sear
212 Raw data
is available at NCBI's SRA with accession number PRJNA27
213 For the proportion for which data
were available at one year we found no significant diffe
214 ve genomic and transcriptomics analysis that
are available at PATRIC.
215 Software
is available at phenomics.uky.edu/PhenoCurve.
216 ld be most beneficial, but no such therapies
are available at present.
217 However, no specific antiviral therapy
is available at present.
218 ve implemented PRIMUS updates in PERL and it
is available at primus.gs.washington.edu.
219 The web server
is available at prodata.swmed.edu/compadre.
220 Python packages
are available at PyPI.
221 Additional information about PySB
is available at pysb.org.
222 RNA-Rocket
is available at rnaseq.pathogenportal.org.
223 hapLOHseq
is available at scheet.org/software, distributed under a
224 Source code
is available at Sourceforge.
225 Code
is available at sourceforge.net/projects/genomezip/
226 The SPARTA software and tutorial
are available at sparta.readthedocs.org.
227 The datasets used in this study
are available at the European Nucleotide Archive, refere
228 he data for all regions except HYPO and SPCO
are available at the Gene Expression Omnibus (GEO) site,
229 Updates to these resources
are available at the JBEI GT Collection website http://w
230 or which MLSA, 16S gene, sodA, and gyrB data
are available at the NCBI, showing that gyrB is superior
231 , this index is only based on variables that
are available at the point of retrieval, and so does not
232 Protein Data Bank archive and the tools that
are available at the RCSB website for accessing and expl
233 The source code and precompiled binaries
are available at the SPATKIN Web site.
234 sts are secluded in the material, while they
are available at the surface of the Ar + NH3-type cataly
235 y expression, indicating that if these cells
are available at the time of training, they play an esse
236 Tutorials
are available at the Virtual Cell website and Help is pr
237 often drugs from different companies-have to
be available at the same time when the trial starts.
238 We recommend that a pediatrician
be available at the time of delivery to evaluate for pot
239 Additional documentation
is available at the aforementioned GitHub repository.
240 atabase, and the updated NetMHCpan predictor
is available at the Center for Biological Sequence Analy
241 on was developed using Pearl and Python, and
is available at the following URL: http://ustbioinfo.web
242 The GATB library is written in C++ and
is available at the following Web site http://gatb.inria
243 All source code
is available at the Github repository http://github.com/
244 locally and on Amazon elastic compute cloud
is available at the National Institute on Aging Genetics
245 yet no simple, rapid, and robust measurement
is available at the point-of-care to assist clinicians i
246 Because to date no similar information
is available at the protein (phenotype) level, we employ
247 A web-interface to the program
is available at the same address.
248 The R package SIBER
is available at the website http://bioinformatics.mdande
249 ion for whom at least 3.5 years of follow-up
was available at the same institution.
250 Azithromycin
was available at the surgical site for a longer period o
251 Data
were available at the district level during 2008-2010 an
252 i-Mental State Examination (MMSE)-type tests
were available at the end of treatment (mean duration: 5
253 liver of 38 patients for whom a graft biopsy
was available at transplantation.
254 Tutorials and video
are available at user guide page.
255 graphical user interfaces and documentation,
is available at:
warwick.ac.uk/wigwams.
256 ams for splitting protein design expressions
are available at www.bioinfo.rpi.edu/tools/piecemeal.htm
257 ams for splitting protein design expressions
are available at www.bioinfo.rpi.edu/tools/piecemeal.htm
258 Codes and results
are available at www.deepchrome.org
259 Software and supplementary document
are available at www.msu.edu/%7Ejinchen/GOExtender
260 Cassava root proteomics data
are available at www.pep2pro.ethz.ch for easy access and
261 abYsis
is available at www.abysis.org.
262 Additional information
is available at www.asco.org/Brachytherapy-guideline and
263 Additional information
is available at www.asco.org/breast-cancer-guidelines an
264 Additional information
is available at www.asco.org/chronic-pain-guideline and
265 Additional information
is available at www.asco.org/genitourinary-cancer-guidel
266 Additional information
is available at www.asco.org/glioblastoma-radiotherapy-e
267 Additional information
is available at www.asco.org/guidelines/antiemetics and
268 Additional information
is available at www.asco.org/guidelines/endocrinebreast
269 Additional information
is available at www.asco.org/guidelines/LAPC and www.asc
270 Additional information
is available at www.asco.org/guidelines/MetPC and www.as
271 Additional information
is available at www.asco.org/guidelines/PCPC and www.asc
272 Additional information
is available at www.asco.org/head-neck-cancer-guidelines
273 Additional information
is available at www.asco.org/HNC-Survivorship-endorsemen
274 Additional information
is available at www.asco.org/lung-cancer-guidelines and
275 Additional information
is available at www.asco.org/melanoma-guidelines and www
276 Additional information
is available at www.asco.org/NACT-ovarian-guideline and
277 Additional information
is available at www.asco.org/supportive-care-guidelines
278 The C ++ implementation
is available at www.beerlab.org/gkmsvm
279 DupliPHY-Web
is available at www.bioinf.manchester.ac.uk/dupliphy/
280 The cluster file from this experiment
is available at www.chargeconsortium.com/main/exomechip.
281 ChemRICH
is available at www.chemrich.fiehnlab.ucdavis.edu.
282 cisExpress
is available at www.cisexpress.org.
283 The resource
is available at www.dsmz.de/miBC.
284 ree-dimensional visualization of the results
is available at www.enigma-viewer.org.
285 GeNemo
is available at www.genemo.org.
286 The implemented software, whose source code
is available at www.github.com/alexandrupaler/tqec, is u
287 The source code for MitoTIP
is available at www.github.com/sonneysa/MitoTIP.
288 Source code
is available at www.kostkalab.net/software.
289 CrypSplice
is available at www.liuzlab.org/CrypSplice.
290 The sequence data
is available at www.ncbi.nlm.nih.gov/sra/?term(1/4)SRP07
291 PhenoScanner
is available at www.phenoscanner.medschl.cam.ac.uk
292 thogen-host interactions database (PHI-base)
is available at www.phi-base.org PHI-base contains exper
293 SuSPect
is available at www.sbg.bio.ic.ac.uk/suspect.
294 of the dataset, challenge design and outcome
is available at www.sbvimprover.com.
295 HapSeq2
is available at www.ssg.uab.edu/hapseq/.
296 The data and code
are available at:
www.csbio.sjtu.edu.cn/bioinf/SemiBioma
297 Additional information
is available at:
www.asco.org/CRC-markers-guideline and
298 Additional information
is available at:
www.asco.org/head-neck-cancer-guideline
299 faxine and gabapentin.Additional information
is available at:
www.asco.org/survivorship-guidelines an
300 Additional information
is available at:
www.asco.org/thoracic-cancer-guidelines