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1 tor's binding loop (encompassing the contact beta-strand).
2 1) included in a "kink" followed by an extra beta strand.
3 helix, echoing the role of ugi's inhibitory beta strand.
4 resulting in a shortening of the C-terminal beta-strand.
5 tein in the crystal lattice to form an extra beta-strand.
6 a disordered solvent-exposed amino-terminal beta-strand.
7 acting in an antiparallel fashion with a PDZ beta-strand.
8 main arrangements, connected by a continuous beta-strand.
9 posed of domains formed by alpha helices and beta strands.
10 led the LytTR domain, which mainly comprises beta strands.
11 he parallel/antiparallel organization of the beta strands.
12 the orientation of residues in transmembrane beta-strands.
13 of only approximately 4.8 A between stacked beta-strands.
14 r by packing of their hydrophobic C-terminal beta-strands.
15 rils differ in intermolecular arrangement of beta-strands.
16 ace of hbeta2m containing the A, B, E, and D beta-strands.
17 consistent with the behavior of amphipathic beta-strands.
18 ty and two D-lysines to limit the lengths of beta-strands.
19 n partially solved and are made up mainly of beta-strands.
20 f intrinsically disordered domains (IDDs) or beta-strands.
21 urns, helices, and antiparallel and parallel beta-strands.
22 es that are, in the fibrillar state, part of beta-strands.
23 that form H-bonds across the dimer interface beta-strands.
24 vent-exposed N terminus spanning the A and B beta-strands.
25 nied with a long-range order of well-defined beta-strands.
26 boxylated agarose use a scaffold of unpaired beta-strands.
27 the peptide hydrogen bonded between parallel beta-strands.
28 n-like shape composed of mostly antiparallel beta-strands.
29 31 and 157, which increased the formation of beta-strands.
39 Ser(P)(279)to interact with the back face of beta-strand 3 (Tyr(286)is on the front face) and loop 2,
40 t coordination of Ser(P)(282)with the end of beta-strand 3 enables Ser(P)(279)to interact with the ba
41 putative dockerin-binding site, centered at beta-strands 3, 5, and 6, is likely to be conserved in o
42 differences are found mainly in the dynamic beta strands 4, 5, and 7, triggered by partial protonati
43 local conformational changes in helix 2 and beta-strand 4, both of which are compromised to maintain
45 ng the N-terminal tail and a loop connecting beta-strands 4 and 5, consistent with interactions invol
48 SAM-binding fold but the region linking core beta strands 6 and 7 (the 'beta6/7 linker') has a unique
49 RD not involved in carbohydrate recognition (beta-strands 7-9; residues approximately 200-220), formi
50 constrained into either a 310-helix (1-6) or beta-strand (7-9) conformation, with variable numbers of
51 Leu-375-Pro-380 of TolA, which constitutes a beta-strand addition commonly seen in more promiscuous p
52 modules more C-terminal than (3)FNIII limit beta-strand addition to (1-5)FNI within intact soluble F
54 t beta-barrel made up of seven anti-parallel beta-strands along with two surrounding alpha-helices.
55 domain that interact with PCSK9, notably the beta-strand and a discontinuous short alpha-helix, and i
58 racy, with a blind three-state (alpha-helix, beta-strand and coil) secondary structure prediction acc
59 tructure, which includes the relocation of a beta-strand and repositioning of the functionally import
60 e [KIGAKI](3) was designed as an amphiphilic beta-strand and serves as a model for beta-sheet aggrega
61 lyroll domain B was inserted between the 7th beta-strand and the 7th alpha-helix of the catalytic dom
62 structure, which is formed by regular (i.e. beta-strands and alpha-helices) and non-periodic structu
65 lt a 1 is a unique beta-barrel comprising 11 beta-strands and forms a "butterfly-like" dimer linked b
66 ng advantage of self-sorting between peptide beta-strands and hydrocarbon chains, we have demonstrate
68 bular domain structure, consisting mostly of beta-strands and random coil with two small alpha-helice
69 eric medin comprising a stable core of three beta-strands and shorter more labile strands at the term
70 terfaces, one involving interactions of ABED beta-strands and the other involving GFCC'C'' beta-stran
71 structure, formed from an elongated stack of beta-strands, and have a rigidity similar to that of sil
72 version of the alpha-helical coiled coils to beta-strands, and partial unfolding of the protein, may
73 ed beta-barrel fold with mostly antiparallel beta-strands, and the loops extending out the beta-barre
74 acking interactions by which the constituent beta-strands are assembled hierarchically into protofila
75 ogen-bonded dimers are antiparallel, and the beta-strands are fully aligned, with residues 17-23 of o
76 e chemical shift assignments indicate that 4 beta-strands are present in the fibril's secondary struc
78 can be achieved to atomic-level accuracy by beta-strand assembly or through metal-mediated interacti
79 ha-helices and pervasively in the underlying beta-strands associated with a pair of large clusters of
81 B24) to a 60 degrees rotation of the B25-B28 beta-strand away from the hormone core to lie antiparall
82 able structures of VDAC proteins show a wide beta-stranded barrel pore, with its N-terminal alpha-hel
83 transfer structural motifs range from multi-beta-strand barrels, to beta-sheet cups and baskets cove
85 led the external loop connecting the B and C beta-strands (BC loop) of the capsid protein VP1 (residu
86 cF) consists of an N-terminal domain of four beta-strands (beta1-beta4) connected by four alpha-helic
89 ded alpha-helix II and hairpin turns between beta-strands betaC-betaD and betaE-betaF as well as seve
92 s of topologically equivalent water-mediated beta-strand bridging interactions within the pseudosymme
93 e finding, because the formation of extended beta-strands by monomeric Abeta proteins suggests a plau
94 dual substrate specificity within the seven beta-strand class of lysine-specific methyltransferases,
95 hese results give insight into split protein beta-strand complementation and enhance a distinct appro
97 ions, which contrasted dramatically with the beta strand conformation previously observed with a broa
98 ich the ligand main chain adopts an extended beta-strand conformation by interacting in an antiparall
101 , which revealed that each molecule adopts a beta-strand conformation that stack together to form par
102 ture reveals that the peptide approximates a beta-strand conformation whose helical symmetry matches
103 due segment termed the stalk, which adopts a beta-strand conformation, instead of forming an alpha-he
107 ions, our experiments show that the extended beta-strand conformational state of PHF6((*)) is readily
108 ch repeat domain of PP32 is composed of five beta-strand-containing repeats anchored by terminal caps
109 -41, directly control the differences in the beta-strand content found between the Abeta40 and Abeta4
111 t that random or out-of-phase motions of the beta-strands contribute greater than two-thirds of the i
112 teinase-assisted removal of their N-terminal beta strand, creating an extended hydrophobic groove tha
113 amyloidogenic conditions (pH6.4-3.7), where beta-strand D and regions of the D-E and E-F loops were
114 of the residues in the beta-sheet containing beta-strands D, A, G, and H undergo conformational fluct
116 structure or changing from alpha helical to beta strand depending on the solvents and molecules adde
119 that rupture and re-insertion of individual beta-strands do not take place locally but require the S
122 bilized by a core domain assembled from four beta strands donated by one VipA and two VipB molecules.
123 gh backbone-to-backbone interactions at open beta-strand edges, in a manner that resembles the inter-
124 ntiparallel arrangement of alpha-helices and beta-strands, enumerated all possible topologies formed
125 ive strategies for mimicking alpha-helix and beta-strand epitopes have been developed, producing valu
126 of another 10FNIII domain via a Trp-mediated beta-strand exchange to stabilize a partially unfolded i
127 heet segments and the turn linking these two beta-strands exhibit high order parameters between 0.8 a
128 he other beta-sheet are limited to the outer beta-strand F, which packs against strand F' in the tetr
130 ve substrates, which harbor mutations within beta-strands, fail to associate productively with the Ba
131 3 residues of the ATG3 fragment form a short beta-strand followed by an alpha-helix on a surface area
132 ty of amyloidogenic peptides to convert into beta-strands for their polymerization into amyloid fibri
134 d shape and showed a significant increase in beta-strand formation in the final tetramer unit relativ
135 eet is shown to be built up from in-register beta-strands formed by nearly the entire protein sequenc
136 e pair of beta-sheets motif is built up from beta-strands formed by only the last two-third of the pr
138 ey Abeta self-recognition sites spanning the beta strands found in cross-beta protofibril structures,
139 tes dissociation of a noncovalently attached beta-strand from a circularly permuted split GFP, allowi
140 ted that detachment of the short, C-terminal beta-strand from the soluble fold exposes key amyloidoge
141 the hypothesis that increasing the number of beta-strands, from two to three, increases the stability
143 parallel beta-sheets have swapped their last beta-strands giving a novel sheet topology which is an i
144 outer beta-strand H, which hydrogen bonds to beta-strand H' of a neighboring subunit in the tetramer,
145 dening is greatest for residues in the outer beta-strand H, which hydrogen bonds to beta-strand H' of
147 er induce or stabilize secondary structures (beta-strands, helices, reverse turns) in short peptide s
151 truncated GFP by substituting as a surrogate beta-strand in the groove vacated by the native strand.
152 r of Abeta42 molecules, each containing four beta-strands in a S-shaped amyloid fold, and arranged in
154 primarily found on cadherins and plexins on beta-strands in extracellular cadherin and Ig-like, plex
156 that monomeric Abeta proteins form extended beta-strands in reverse micelles, while an analogue with
157 e Sec61/SecY complex to translocate IDDs and beta-strands in the absence of alpha-helical domains.
159 tenon' motifs are shown to join neighbouring beta-strands in the C-terminal barrel domain, and mutati
160 psin-like protease conformation in which two beta-strands in the core of the protease domain undergoe
161 inding, is a flexible loop that connects two beta-strands in the cytokine-binding domain (DII) of IL-
162 rn break crucial hydrogen-bonds bridging two beta-strands in the Greek key motifs at the "tyrosine co
164 bility mapping to identify several potential beta-strands in the Tom40 protein in isolated mitochondr
167 ructure becomes more stable as the number of beta-strands increases, via comparisons among peptides d
168 ing alpha-subdomain compaction, facilitating beta-strand intercalation, and optimizing translation ki
169 usly not only the arrangement of the peptide beta-strands into beta-sheets but also the beta-sheet in
170 mbrane, but it is unclear whether it threads beta-strands into the lipid bilayer in a stepwise fashio
171 stinct, second conformation wherein the last beta-strand is retracted to extend the Ser65 loop and sh
172 itution at the middle of the dimer interface beta-strand is sufficient to generate a fully functional
173 with a parallel in-register organization of beta-strands is capable of seeding the conversion of ful
174 observed in a parallel orientation with the beta-strands, is a typical feature of type A CBMs, altho
180 uent hairpin fragments and comparable-length beta-strand-loop-beta-strand models, indicate 2-state fo
182 (OM) beta-barrel proteins composed of 12-18 beta-strands mediate cellular entry of small molecules i
184 contains the motifs characteristic of seven-beta-strand methyltransferases, a methyl-accepting subst
186 otease accessibility studies, support the 19 beta-strand model for Tom40 with the C-terminal end of t
188 ments and comparable-length beta-strand-loop-beta-strand models, indicate 2-state folding for all top
191 2 site 2 TQC motif forms a uniquely extended beta-strand, not observed in other dynein light chain-ta
195 r PapC, and a loop between the 12th and 13th beta strands of the TD (beta12-13 loop) was found to fac
196 A chimaera S-peptide composed of the 10th beta-strand of GFP (s10) and a kinase substrate peptide
197 l, placed at the N-terminal end of the first beta-strand of Het-s fibrils, is significantly reduced i
198 and sfCherry11 are derived from the eleventh beta-strand of super-folder GFP and sfCherry, respective
199 x of the muscle endplate AChR is linked to a beta-strand of the extracellular domain that extends to
200 ions in WDR1 affecting distinct antiparallel beta-strands of Aip1 were identified in all patients.
202 etwork flips nearly 90 degrees , and the two beta-strands of each monomeric unit move apart, to give
203 selective loss of O-Man glycans on specific beta-strands of EC domains, suggesting that each isoenzy
206 r structure but intercalates between the two beta-strands of the amyloid fibril and binds to hydropho
207 eta-barrel of BamA to induce movement of the beta-strands of the barrel and promote insertion of the
209 highly conserved sites localized to specific beta-strands of their extracellular cdh (EC) domains.
212 ns reveal that interactions between shearing beta-strands on the threaded and knotting loops provide
213 r interactions with MinD, giving rise to a 4-beta-stranded "open" structure through an unknown mechan
214 h at the C terminus, whereas the presence of beta-strands or only a short alpha-helical stretch leads
215 Ig-like fold encompassing seven antiparallel beta-strands organized in two beta-sheets, packed into a
216 atic interactions across non-hydrogen-bonded beta-strands outside the iLBPs, arguing for the generali
218 ed upon association with IMPs; resulting IMP-beta-strand peptide complexes resisted aggregation when
219 2) oligomers and fibrils suggest that folded beta-strand peptide conformations form early in the cour
224 hanges to Val(8) on the exterior side of the beta-strand, possibly through contacts to Lys(18) Thus G
225 AP1, revealed an extension of the N-terminal beta-strand previously shown to cross between protomers
226 demonstrate that two valine (V) residues and beta-strand propensity in QVKEVTQ are structurally impor
229 hydroxamate uptake component A (FhuA), a 22-beta-stranded protein containing an N-terminal 160-resid
231 egatively charged and is occupied by a short beta-strand, referred to as the intrinsic ligand, explai
232 escent protein (GFP), i.e., split GFP with a beta-strand removed, that were found to behave different
233 edicted to extend perpendicularly across the beta-strands, requiring them to bend to match the concav
234 e propose that Pro substitution of interface beta-strand residues is a viable strategy for generating
235 interactions by substituting dimer interface beta-strand residues with proline (Pro) results in fully
236 rvation of a continuous 20-residue elongated beta-strand (residues 39-58), the latter being a salient
238 O binds to TRiC directly, mainly through its beta-strand rich, DNA-binding domain (AML-(1-175)), with
240 X-ray scattering (SAXS) data show that this beta-strand-rich conformation converts the PE membrane t
241 es demonstrate that alpha-synuclein can form beta-strand-rich oligomers that are neurotoxic, and rece
242 tor, NDUFAF5, belongs to the family of seven-beta-strand S-adenosylmethionine-dependent methyltransfe
244 pic labels at I32, M35, G37, and V40 exhibit beta-strand secondary chemical shifts in 2-dimensional (
245 hemical shifts for EmrE were consistent with beta-strand secondary structure for the loop connecting
247 omains, which are each assembled from paired beta strands secured by disulfide bonds and grasp two si
248 pts a beta-helical architecture, in which 18 beta-strand segments are arranged in six consecutive win
249 h of BacA filaments, and the distribution of beta-strand segments identified by solid-state NMR, we p
250 drophobic residues located in the identified beta-strand segments suggest that bactofilin folding and
251 repeat unit comprising at least two extended beta-strands, separated by a turn stabilized by a Asp(25
253 d short amyloid-like aggregation-prone cross-beta-strand sequences within the putative PFMG1 pseudo-E
255 d beta-barrel consisting of six antiparallel beta-strands similar to what was observed in the hepatit
256 ture continuous wave (CW) experiments of the beta-strand site showed two distinct components that wer
257 topology formed by 2 sheets of antiparallel beta strands stabilized by the hallmark disulfide bond b
258 ystine knot structure, with two antiparallel beta-strands stabilized by three disulfide bridges.
261 rm a very unusual architecture composed of a beta strand "stalk" that supports a structurally diverse
262 3 (CDR3H) that folds into a solvent-exposed beta-strand "stalk" fused to a disulfide crosslinked "kn
264 ed hairpin feature is its anti-parallel, two beta-strand stem, which we show by mutagenesis to be cri
267 ly random coil in the nanosphere-gel adopt a beta-strand structure and are less mobile with HAP bindi
268 domains display a similar three antiparallel beta-strand structure and interact with the same Cx43CT(
269 ETTA and MD simulations resulted in a unique beta-strand structure distinct from the conventional amy
273 copper-catalyzed oxidation promotes extended beta-strand structures that lack a cooperative fold.
274 tend to distances commensurate with extended beta-strand structures within the earliest stages of agg
275 yl group of the terminal adenosine towards a beta-strand, such that an aminoacylated tRNA at this pos
276 he isolated TrkAIg2 domain crystallizes as a beta-strand-swapped dimer in the absence of NGF, occludi
279 result in the ordering of two anti-parallel beta-strands that protrude from each monomer and allowed
280 the core of Tau fibrils assembles from short beta-strands, the properties of the much longer unstruct
283 r internal linear motifs of proteins bind as beta-strands to form an extended antiparallel beta-sheet
284 ion into amyloid fibrils, they also use such beta-strands to stabilize the disrupted catalytic site r
285 ithin the N-terminal domain, which undergoes beta-strand-to-alpha-helix and alpha-helix-to-beta-stran
286 structural features that included an unusual beta-strand topology, a number of extended loops and a p
287 eta-strand-to-alpha-helix and alpha-helix-to-beta-strand transitions during catalysis, interacts with
288 nes, a time-dependent increase in aggregated beta-strand-type structure in CAPs with relatively high
289 a-helical domains have to precede the IDD or beta-strands, whereas in mammalian cells, C-terminally l
290 N-terminal F(1-94) domain with four-parallel beta-strands, which are intermittently surrounded by fou
291 cated RRM2 fragments with abnormally exposed beta-strands, which can oligomerize into high-order incl
292 point, causing the local formation of short beta-strands, which move the path of the chain by 120 de
293 ve site of the enzyme by forming an extended beta-strand with Glu(40) or Tyr(46) inserted into the S1
294 nterfered with the interaction of a collagen beta-strand with the beta-sheet structure of Fn modules
295 ayers of beta-sheets possessing antiparallel beta-strands with each being anchored by a pair of cyste
297 eta-strands and the other involving GFCC'C'' beta-strands, with the former burying one prominent glyc
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