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1 anscription factors including Gli, GAGA, and Bicoid.
2 rosophila requires the anterior determinant, Bicoid.
3 paired activity and thus indirectly requires bicoid.
4 reliance of anterior gap gene expression on Bicoid.
5 operates through a different mechanism than bicoid.
6 just beyond the initial border delineated by Bicoid.
7 s of maternal transcription factors, such as Bicoid.
9 ectly and specifically to stem-loop V of the bicoid 3' UTR through its amino-terminal GLUE domain, ma
10 r axial patterning is largely established by bicoid, a rapidly evolving maternal-effect gene, working
11 regions containing saturating levels of the Bicoid activator, but function additively in regions whe
15 es out this dual role, we sought to identify Bicoid-ancillary proteins that might mediate Bicoid's fu
17 pecifically bound to the DNA and that whilst Bicoid and Caudal display a higher specificity, the othe
18 es in flies relies on redundant functions of Bicoid and Caudal, leading to a lack of dramatic action
19 control or splicing, or the localization of bicoid and gurken mRNAs and the organization of the micr
21 ions are distinct from the interplay between Bicoid and Hunchback, which pattern the anteroposterior
23 Dl gradient are different from those of the Bicoid and MAPK phosphorylation gradients, which pattern
26 is required for the localization of gurken, bicoid and oskar mRNA as well as post-translational modi
27 cytoskeleton in Drosophila oocytes, in which bicoid and oskar mRNAs become localised to establish the
28 9 oocyte and the subsequent localisation of bicoid and oskar mRNAs to opposite poles of the cell.
29 or the microtubule-dependent localization of bicoid and oskar mRNAs to opposite poles of the Drosophi
30 ule cytoskeleton directs the localisation of bicoid and oskar mRNAs to the anterior and posterior pol
31 shed during oogenesis by the localization of bicoid and oskar mRNAs to the anterior and posterior pol
36 and prevented essentially all translation of bicoid and several other mRNAs before egg activation.
38 al 3' UTR, and (3) genetic interactions with bicoid, and with genes encoding eIF4E, Larp1, polyA bind
39 nteriorly localized MAPK substrates, such as Bicoid, antagonize MAPK-dependent downregulation of Capi
40 s involved in segmentation, fushi tarazu and bicoid, appear to have acquired these roles by functiona
42 bryo and reveal that the nuclear dynamics of Bicoid are critical for maintaining precision within the
43 the phylogenetic distributions of panish and bicoid are limited to specific families of flies, reveal
45 ties of two Drosophila homeodomain proteins, Bicoid (Bcd) and an altered-specificity mutant of Fushi
46 ning; such processes include localization of bicoid (bcd) and gurken (grk) mRNAs and anchoring of the
48 photoswitching of a fusion of the morphogen Bicoid (Bcd) and the photoconvertible fluorescent protei
49 est that the Drosophila transcription factor Bicoid (Bcd) binds to several thousand sites during earl
51 domain of the Drosophila morphogenic protein Bicoid (Bcd) complexed with a TAATCC DNA site is describ
52 crease the overall amount of the maternal TF Bicoid (Bcd) fivefold, Bcd concentrations in cells at po
54 ided by the Drosophila morphogenetic protein Bicoid (Bcd) in wild-type (wt) embryos with embryos lack
56 osophila embryos where the maternal gradient Bicoid (Bcd) instructs anterior-patterning (AP) patterni
67 ely by the activity of the dipteran-specific Bicoid (Bcd) morphogen gradient, which operates both ins
70 as a broad anterior domain controlled by the Bicoid (Bcd) morphogen, and then in a stripe at the posi
74 cal Puf protein Pumilio temporally regulates bicoid (bcd) mRNA translation via evolutionarily conserv
76 ternal determinants, such as oskar (osk) and bicoid (bcd) mRNAs, that determine the AP polarity of th
79 ression of the maternal transcription factor Bicoid (Bcd) provides positional information to activate
83 ression levels of gurken (grk), oskar (osk), bicoid (bcd), and decapentaplegic (dpp) transcripts are
84 r embryos by depleting a key maternal input, bicoid (bcd), and measuring gene expression patterns of
86 studies of the Drosophila morphogen gradient Bicoid (Bcd), which is required for anterior-posterior (
87 ere we perturb the timing of the shutdown of Bicoid (Bcd)-dependent hunchback (hb) transcription in t
92 ar combinations of binding motifs, including Bicoid-Bicoid, Hunchback-Hunchback, Bicoid-Dorsal, Bicoi
93 ncluding in the posterior, where we observed Bicoid binding despite vanishingly low protein levels.
95 ntrast to canonical models, we observed that Bicoid binds to DNA with a rapid off rate throughout the
96 lute concentration), the noise in readout of Bicoid by the activation of Hunchback, and the reproduci
97 show that including trapping and release of Bicoid by the nuclei during cleavage cycles does not alt
98 eroposterior patterning in insects that lack Bicoid can provide insight into the evolution of the div
102 enic Drosophila embryos using the Drosophila bicoid cis-regulatory and mRNA localization sequences.
104 scoring the need to study DNA recognition by Bicoid-class homeodomains in an individualized manner.
107 ion of Hunchback, and the reproducibility of Bicoid concentration at corresponding positions in multi
110 tely 1 hr after fertilization), with nuclear Bicoid concentration rising and falling during mitosis.
116 e use optogenetic manipulation to switch off Bicoid-dependent transcription in the early Drosophila e
119 evidence is presented for the importance of Bicoid-Dorsal linkage in the integration of the anterior
122 ching measurements and indirect estimates of Bicoid-eGFP diffusion constants (D < or = 1 microm(2)/s)
126 te their similar distributions, we find that Bicoid from Lucilia and Calliphora do not rescue Drosoph
127 expressed eGFP fused to the coding region of bicoid from three dipteran species in transgenic Drosoph
128 ly to replace the function of the Drosophila bicoid gene for the initiation of patterning along the a
130 This suggests that nuclei do not shape the Bicoid gradient but instead function solely during its i
134 number of nuclei during the formation of the Bicoid gradient in embryos of Drosophila melanogaster.
135 nsistent with experimental observations, the Bicoid gradient in our model is established before nucle
138 imulation results show that a size-dependent Bicoid gradient input can lead to reduced Kruppel expres
140 the gap gene hunchback (hb) by the maternal Bicoid gradient is one of the most intensively studied g
141 to account for the observed dynamics of the Bicoid gradient, but no one model can account for all it
144 pe of the Drosophila, Lucilia and Calliphora Bicoid gradients appears to be a conserved feature of th
146 Patients have mutations in PITX2, a paired-bicoid homeobox gene, also involved in left/right polari
147 ique arginine at position 54 (Arg 54) of the Bicoid homeodomain enables the protein to recognize X1 b
149 chemical footprint analyses reveal that the Bicoid homeodomain makes both shared and distinct contac
150 identified a missense mutation in the PITX1 bicoid homeodomain transcription factor in a family with
153 ood agreement with recent experiments on the Bicoid/Hunchback system in the early Drosophila embryo a
156 regression for modelling the propagation of Bicoid in the embryo and infer aspects of source regulat
158 or requires RNA binding, we suggest that the Bicoid-interacting methyltransferase might be important
160 Here, we show that retraction requires a Bicoid-interacting protein, Sap18, which is part of the
161 rsion of the two-hybrid method and found two Bicoid-interacting proteins, Bin1 and Bin3, both of whic
166 e custom two-hybrid method we used, in which Bicoid is bound to DNA via its own DNA binding domain, r
167 model where, in labral regions of the head, Bicoid is converted from an activator into a repressor b
170 cally, the gradient of the nuclear levels of Bicoid is stable, whereas the pattern of MAPK phosphoryl
176 , we show that Tbx1 is co-expressed with the bicoid-like homeodomain transcription factor Pitx2 in se
179 on factor 3 (GTF3) binds specifically to the bicoid-like motif of the troponin I(slow) upstream enhan
181 de domain 6, interacted most avidly with the bicoid-like motif; the alpha- and beta- isoforms that in
182 bicoid mRNA as anterior determinant, but no bicoid-like sequence could be identified in this species
183 namic and support a model for maintenance of bicoid localization by continual active transport on mic
184 e identify a temporally distinct pathway for bicoid localization in late oocytes that utilizes a spec
185 the oocyte anterior by coupling them to the bicoid localization pathway, resulting in the formation
190 lls, the limits set by the random arrival of Bicoid molecules at their targets (which depends on abso
191 are likely to interact with other DNA-bound Bicoid monomers or other parts of the Bicoid protein.
193 maging, the development and stability of the Bicoid morphogen gradient in Drosophila embryos that exp
195 is expression to explore the dynamics of the Bicoid morphogen gradient, a signal that patterns the an
197 consider four measures of precision for the Bicoid morphogen in the Drosophila embryo: the concentra
198 cifically to IV/V RNA, a minimal form of the bicoid mRNA 3' untranslated region that supports a norma
199 ior of the oocyte, the anterior anchoring of bicoid mRNA and the basal localization of prospero mRNA
200 ophila oocytes, the anterior localization of bicoid mRNA and the posterior localization of oskar mRNA
201 place Episyrphus within the clade that uses bicoid mRNA as anterior determinant, but no bicoid-like
202 opose that microtubule-dependent Exuperantia-bicoid mRNA complex formation in the nurse cell cytoplas
209 n RNA-binding protein that co-localizes with bicoid mRNA is Staufen, which binds non-specifically to
213 cterized a microtubule-dependent pathway for bicoid mRNA localization during midoogenesis, when bicoi
215 nce Miranda is expressed in late oocytes and bicoid mRNA localization requires the Miranda-binding do
216 ein complex that binds a minimal form of the bicoid mRNA localization signal in a manner both specifi
220 ght to count individual maternally deposited bicoid mRNA molecules and compare variability between em
222 determinants to discrete cortical positions: bicoid mRNA to the anterior cortex, oskar mRNA to the po
224 Exuperantia to support anterior transport of bicoid mRNA, and microtubules are required for bicoid mR
225 lecules, translated from maternally provided bicoid mRNA, establish a concentration gradient in Droso
226 ior with oskar mRNA and to the anterior with bicoid mRNA, it acts as a marker for both poles of the o
227 w is required for the proper localization of bicoid mRNA, the anterior determinant that plays a criti
228 e imaging of fluorescently tagged endogenous bicoid mRNA, we identify a temporally distinct pathway f
233 localizes to the anterior of the oocyte in a bicoid-mRNA-dependent manner, and is required for the su
235 protects the mis-specified telson tissue in bicoid mutants from hid-induced cell death, whereas mis-
237 ilia and Calliphora do not rescue Drosophila bicoid mutants, suggesting that that Bicoid proteins hav
239 find that, in Episyrphus, a highly diverged bicoid ortholog is solely responsible for the AP polarit
240 ocalization of four maternal mRNAs - gurken, bicoid, oskar and nanos - in the Drosophila oocyte is es
242 that Lucilia sericata and Calliphora vicina Bicoid produce gradients very similar to the endogenous
244 data and show that such a flow can lead to a Bicoid profile that is consistent with various experimen
249 rosophila oocyte is essential to produce the Bicoid protein gradient that patterns the anterior-poste
250 importance of cooperative DNA binding by the Bicoid protein in establishing a pattern along the anter
252 s translated to form a morphogen gradient of Bicoid protein that patterns the head and thorax of the
253 the anterior body patterning morphogen, the Bicoid protein, requires both localization and translati
257 sophila bicoid mutants, suggesting that that Bicoid proteins have evolved species-specific functional
259 main of the Drosophila morphogenetic protein Bicoid recognizes different types of DNA sequences found
261 5' regulatory sequences (Pitx1(HS)) from the bicoid related pituitary homeobox gene (Pitx1) to target
264 tion (c.388G-->A) was identified in PITX1, a bicoid-related homeodomain transcription factor critical
265 ntroduced Arg 54 to DNA recognition by other Bicoid-related homeodomains, including that from the hum
267 cription factor TBX4, a likely target of the bicoid-related transcription factor PITX1 previously imp
274 ld-type (WT) PITX2a to DNA containing tandem bicoid sites in a head-to-tail orientation (Hill coeffic
277 orders of magnitude from fertilization, when Bicoid synthesis is initiated, to nuclear cycle 14 when
278 d this process have focused on the classical Bicoid target enhancer located immediately upstream of t
279 nogaster embryos of the transcription factor Bicoid that forms a gradient and initiates patterning al
280 sed a genetic screen to isolate mutations in Bicoid that specifically disrupt cooperative interaction
281 transcription factors includes WT-1, TRA-1, bicoid, the bacterial sigma(70) subunit, STAT1 and TLS/F
282 mine the patterning activities of Drosophila Bicoid, the first known molecular morphogen and reach di
284 the level of 7SK RNA, (2) reduced binding of Bicoid to the caudal 3' UTR, and (3) genetic interaction
285 lity of the Drosophila melanogaster protein, Bicoid, to stimulate transcription of target genes in pr
288 microm(2)/s) provide a consistent picture of Bicoid transport on short ( approximately min) time scal
289 ition 50, which has been shown to impart the bicoid-type (TAATCC) DNA binding specificity to other ho
294 caling is accounted for by the properties of Bicoid, we expressed eGFP fused to the coding region of
295 novel functions of the Hox3 homologs zen and bicoid were adopted somewhere in the crustacean-insect c
296 which in Drosophila are performed jointly by bicoid, whereas hunchback appears to be regulated by bot
297 , head formation is driven by a single gene, bicoid, which generates head-to-tail polarity of the mai
298 polarity of the Drosophila embryo depends on bicoid, which is necessary and sufficient to determine t
299 re, our results indicate that association of bicoid with the anterior oocyte cortex is dynamic and su
300 ditional parameters, such as the lifetime of Bicoid, would help to identify and develop better models
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