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1 bunit alpha, to the sGCbeta1 promoter (CCAAT binding sequence).
2 ds Rps23, Nro1, and Sre1 through a consensus binding sequence.
3 id C-terminus that matches an NRP1 consensus binding sequence.
4 g SAM (OFF state) by encrypting the ribosome binding sequence.
5 rial oriCs generally differ from the optimal binding sequence.
6 n extracted an optimal palindromic 13 bp DSX-binding sequence.
7 son to a functionally derived consensus BvgA-binding sequence.
8 interacts with caveolin-1 via its caveolin-1-binding sequence.
9 n function in the absence of its cognate DNA-binding sequence.
10 PDZ-RhoGEF and frabin identify a novel actin-binding sequence.
11 of a cytosine residue flanking the core CSL binding sequence.
12 of an oligonucleotide encompassing the CrgA-binding sequence.
13 the Pbx1 promoter segment harboring the CSL-binding sequence.
14 en in the absence of an operational clathrin binding sequence.
15 a p190B mutant specifically lacking the Rac1-binding sequence.
16 SP, which is similar to the consensus 14-3-3 binding sequence.
17 cific enhancers that lack the consensus MEF2-binding sequence.
18 hering of proteins through an engineered CaM-binding sequence.
19 ys to alternative modifications within their binding sequence.
20 iption factor NF-kappaB with its cognate DNA binding sequence.
21 ied BaMV RNA containing the MS2 coat protein binding sequence.
22 signature sequence, and FAD-binding and NADP-binding sequences.
23 us 8 E2, and prototype foamy virus chromatin-binding sequences.
24 ucts bearing the En1/2 and Lmx1a 3'UTR miRNA-binding sequences.
25 highlighted by the presence of ETS- and AP-1-binding sequences.
26 d weight matrices were built to model SyCrp1 binding sequences.
27 ne for the introduction of discrete integrin-binding sequences.
28 ssociation with evolutionarily conserved Otd-binding sequences.
29 nto CLADE, resulting in some of the tightest binding sequences.
30 weak (K(d)>1 mM) and tight (K(d)<10 microM) binding sequences.
31 quence compared with other characterized LC8 binding sequences.
32 thesis gene cluster and have degenerate PpsR binding sequences.
33 th expression of microRNAs targeting triplex binding sequences.
34 ed by other, heterologous phosphatidylserine-binding sequences.
35 20 natural amino acids and identified novel binding sequences.
36 logous to known carbonic anhydrase II (CAII) binding sequences.
37 Pax6-PD, Pax6-PD/HD and Pax6-HD established binding sequences.
38 in p53beta mRNA through the consensus SRSF3-binding sequences.
39 rve enrichment of the canonical T-domain DNA binding sequence 5'-TCACACCT-3' in the vicinity of most
45 6 is contained within a predicted calmodulin-binding sequence and acetylation of Lys-306 strongly inh
46 leotide that contains a transcription-factor-binding sequence and hydrophobic membrane-disruptive cha
47 de at each position in the consensus p53 DNA binding sequence and identified substitutions tolerated
48 ated the contributions of the 15-bp core Fis binding sequence and its flanking regions to Fis-DNA int
49 phatase activity, its extreme C-terminal PDZ binding sequence and probably Myosin 5A to control lumen
51 ng sites, suggest how the ordered nucleotide binding sequence and structural changes are dynamically
52 assays validated the identity of the APUM23 binding sequence and supported the location of 3 of the
53 f the tail - the ATP-independent microtubule-binding sequence and the IAK autoinhibitory motif - are
54 f the modification in terminating the primer-binding sequence and thus limiting run-on transcription,
55 5 occupy enhancers that are enriched for ETS-binding sequences and are both functionally important fo
56 By site-directed mutagenesis of SR34 RNA-binding sequences and Arg/Ser-rich (RS) domain, we furth
57 coding PalmtdTomato were tagged with MS2 RNA binding sequences and detected by co-expression of bacte
58 d greatly expand the repertoire of HNF4alpha-binding sequences and target genes, thereby identifying
59 TP0262 specifically recognizes the putative binding sequences and that DNA binding is cAMP-dependent
61 of RelA, its association to a DNA consensus binding sequence, and NF-kappaB transcriptional activity
62 pastin also displays an adjacent microtubule binding sequence, and the presence of both ESCRT-III and
63 vivo peak in DSX binding and an optimal DSX-binding sequence, and thus are almost certainly direct D
64 BEND to design both strong and weak histone- binding sequences, and measured the corresponding free e
65 s corresponding to predicted GroEL consensus binding sequences, and that the structure of the bound p
66 e for the introduction of mammalian integrin-binding sequences, and these sequences may be manipulate
67 endogenous Gag polyproteins sharing the same binding sequence; and several proteins involved in cytos
68 Additionally, we identified a conserved Fur binding sequence approximately 130 bp upstream of the tr
69 h position in the required (Gly-Xaa-Yaa)6 Fn-binding sequence are probed here, using model peptides a
72 osphorylated protein containing the integrin binding sequence Arg-Gly-Asp through which it interacts
74 olar cells and interacted with the predicted binding sequences as assessed by electrophoretic mobilit
75 ter revealed the presence of 1 putative STAT-binding sequence at -476 nt, and electrophoretic mobilit
76 ry miRNA transcripts and identified the ICP4-binding sequences at the transcription initiation sites
77 region, both of which contained multiple Sp1-binding sequences but lacked classic progesterone respon
78 the ability of a peptide with perturbed PDZ-binding sequence, but preserved CaMKIIalpha binding (TAT
79 nd entropic contributions, as expected for a binding sequence, but that D2 gives rise to entropic pen
80 human E2F1 promoter, which lacks a LANA DNA-binding sequence, but this function requires both the N
81 analyses identified putative PLZF and SALL4 binding sequences, but rarely both at shared sites, indi
83 showed that mutations (GT-->TG) in the Reb1p-binding sequence caused an 8.6-fold reduction in beta-ga
84 associates with chromosomes via a chromatin-binding sequence (CBS) located within its C-terminal reg
85 idermal growth factor-like domain and a uPAR-binding sequence comparable with that found in mammalian
86 eover, Pak1 does not contain a canonical LC8 binding sequence compared with other characterized LC8 b
87 unique 93 base pair (bp)-long (+/-2 bp) ArgR-binding sequence containing two ARG boxes (39 bp) and re
88 nsitivity resulting from mutations in the Fn-binding sequence could lead to degradation of type I col
89 rofiles, genome-wide location analysis data, binding sequence data, and gene ontology (GO) informatio
90 xpression of the genes containing a RORE DNA binding sequence (DBS), including the Bmal1 gene, thereb
91 also nearly identical to the consensus KLF11 binding sequence defined here by random oligonucleotide
92 .5F proteins containing a scrambled integrin-binding sequence, demonstrating the importance of target
94 ical, and cell-based assays, we show that GR binding sequences, differing by as little as a single ba
95 the CjFur crystal structure rationalize the binding sequence diversity that was uncovered during ChI
96 nosine-5'-triphosphate (ATP) aptamer) or ion-binding sequences (e.g., T-rich Hg(2+) ion-binding domai
97 and Syk, we examined the role of PSGL-1 ERM-binding sequence (EBS) on cell capture, rolling, and sig
98 Site-directed mutagenesis of the NKX6.1 core-binding sequence eliminated NKX6.1-mediated activation a
99 s onto SiO2 particles mediated by the silica-binding sequence enables visual detection of environment
101 produced a shared dataset of FMRP consensus binding sequences (FCBS), which were reproducibly identi
102 We report the identification of a novel RNA binding sequence for a nucleolar Arabidopsis PUF protein
103 in depolymerizing factor, which has a common binding sequence for actin and PIP(2), was required for
104 e we report the identification of an optimal binding sequence for BEN by SELEX (systematic evolution
106 partate (RGD)-containing sequence (consensus binding sequence for integrins) allowed us to detect a s
110 The polymorphism is located in a consensus binding sequence for the E2F family of transcription fac
111 ntained the previously established consensus binding sequence for the respective proteins, thus attes
112 a putative Na3 site and propose a plausible binding sequence for the substrate and the three Na(+) i
116 NFAIP2, we were unable to correlate specific binding sequences for GR or occupancy patterns with repr
117 ing region of H2a mRNA harbors high affinity binding sequences for Lin28 and that these sequences sti
119 odimer binds to a specific DRE that overlaps binding sequences for peroxisome proliferator-activated
120 protein structures, thermodynamic data, and binding sequences for the corresponding transcription fa
122 ike superfamily of periplasmic peptidoglycan-binding sequences, found in several types of bacterial m
123 AP-ADAP chimera contains the CARMA1 and TAK1 binding sequences from ADAP, expression of the chimera d
125 the drug on a monolithic column to partition binding sequences from nonbinding sequences using a low-
127 transiently transfected with pDNA containing binding sequences from two of the DNA shuttle proteins,
130 TREs via sequence-specific contacts to a GR-binding sequence (GBS) half-site found embedded within t
131 oid receptor (GR) interacts with specific GR-binding sequences (GBSs) at glucocorticoid response elem
132 We predicted a novel and selective integrin-binding sequence, GFPGEN, through the use of computer mo
133 f MTM recognition of DNA, including the FLI1 binding sequence GGA(A/T), are needed to understand how
134 s containing a putative transcription factor binding sequence, GGAANCGGAANY, and a nucleolar gene net
135 ntify a conserved Bub3 interacting and GLE-2-binding sequence (GLEBS) containing ZNF207 (BuGZ) that a
137 cture of human Rae1 in complex with the Gle2-binding sequence (GLEBS) of Nup98 at 1.65 A resolution.
139 f a single terminal nucleotide in one of the binding sequences had little effect on the efficiency of
140 ell-conserved RNA-binding domain and cognate binding sequence have been evolutionarily rewired to reg
142 t NTD, or a peptide of the TSP1 calreticulin-binding sequence (hep I) increased both collagen express
143 imilarity to the T. pallidum TroR (TroR(Tp)) binding sequence; however, the position of this motif wi
144 oxygen-terminated side the consensus peptide-binding sequence (HSXXH) was predicted in silico and con
145 tion of nanocrystal mineralizers through ZnS binding sequences identified by cell surface display and
147 Significantly, disruption of the Pumilio-binding sequence in chemotaxis pathway mRNAs, or misloca
151 C1b region of AC-AplA that resembles the CaM-binding sequence in the C1b region of AC1 in mammals.
154 opts a phosphatidylinositol 4,5-bisphosphate-binding sequence in the cytoskeletal protein gelsolin.
156 re we report the identification of the ATG12 binding sequence in the flexible region of human ATG3 an
161 ranscription factors find their specific DNA binding sequence in the vast expanse of the cell and how
163 e significance of degeneracy within the PpsR binding sequence in vivo, we adapted the chromatin immun
165 of cycB in immature spermatocytes, with Rbp4 binding sequences in a cell type-specific shortened form
166 anner, and the distance between the two BlcR-binding sequences in DNA was critical for BlcR-DNA assoc
170 the role of the spatial organization of H-NS-binding sequences in the assembly of long-range nucleopr
171 under physiologic conditions with degenerate binding sequences in the presence of other biologically
172 possibilities, we used substrates with POT1-binding sequences in the single-stranded tail, duplex or
173 ences that are similar to mitotic chromosome-binding sequences in the transcriptional pioneer protein
174 ides corresponding to naturally occurring Zn-binding sequences in transcription factors have been qua
175 ulfate, and the presence of a NRP1 consensus binding sequence indicate that NRP1 is the binding site
176 neurin ICDs do not contain any intrinsic DNA binding sequences, interaction partners are required to
177 NA 3'-UTR sequence, and insertion of the p53-binding sequence into beta-globin mRNA destabilized the
178 fficient pentamer algorithm by splitting DNA binding sequences into overlapping fragments along with
179 east three mechanisms: (i) divergence of DNA-binding sequences into two subfamilies; (ii) condition-s
180 m this approach it would seem that a minimum binding sequence is a disulfated trisaccharide comprised
181 cAMP-response element-binding protein (CREB) binding sequence is present in the Ape1 gene (encodes AP
184 in consequence, the landscape of functional binding sequences is sparse but robust, favoring scenari
187 ibition of NFkappaB interacting with its DNA binding sequences, leading to decreased expression of NF
188 Gly replacements at four sites within the Fn-binding sequence led to decreased Fn binding to denature
191 plex with the neuronal nitric oxide synthase binding sequence), Lys-148 at the C-terminus of CaM form
192 Transcript pattern clustering and a sigma(E)-binding sequence model were used to predict candidate pr
196 ration of decoy ODNs comprising the NRSF DNA-binding sequence (neuron restrictive silencer element [N
197 s of hPDI are that it contains consensus DNA-binding sequences not only for nearly 500 human transcri
198 a plasmid encoding the secreted calreticulin-binding sequence [NTD (1-35)-EGFP] or a control sequence
199 ent with a peptide derived from the Galpha13-binding sequence of beta1 abolished Galpha13-beta1 inter
200 domain and the PSD-95/Discs-large/ZO-1 (PDZ)-binding sequence of DAT, was made membrane-permeable by
201 hemic injury in vivo The minimal syntaxin 1A-binding sequence of Kv2.1 C terminus (C1aB) was first id
202 to neurexins, and mutation of the PDZ-domain binding sequence of neurexin-3beta blocked its transport
207 develop and validate aptamers containing the binding sequence of TF AP-1 (5ECdsAP1), in order to eluc
208 A synthetic peptide that mimics the main FN-binding sequence of TG2 blocks the formation of TG2-FN c
209 ription factor 1 (MyT1-2), and the second Zn-binding sequence of the DNA-binding domain of glucocorti
210 tein created by replacing a natural receptor-binding sequence of the ecotropic Moloney murine leukemi
211 reproduced with a peptide possessing a CD36 binding sequence of TSP-1, while the effects of TSP-1 we
213 nt within putative regulatory regions of the binding sequences of a diverse library of 104 nonredunda
214 affinity in a collapsed structure to the CaM-binding sequences of both the Ca-ATPase and RyR1, result
215 structure of calmodulin (CaM) bound with CaM-binding sequences of either the plasma membrane Ca-ATPas
216 nding protein and bends all three tested DNA binding sequences of HMGA2, SELEX1, SELEX2, and PRDII.
217 d acidic cluster motif reminiscent of ARP2/3-binding sequences of NPFs but fails to facilitate ARP2/3
218 was Ca(2+)-independent, mutations in Ca(2+)-binding sequences of synaptotagmin-1 or synaptotagmin-7-
220 eal that Oct-1 binds to the putative octamer-binding sequences of the dysregulated genes and that thi
221 tely matched both the intronic and exonic U1 binding sequences of the mutated DDC gene could correct
225 effect of the downstream coat gene ribosome binding sequence on maturation gene expression appeared
226 98-602) clusters, forming accessible heparin binding sequences on the TG2 three-dimensional structure
228 tion that maximizes the enrichment of target-binding sequences over non-target-binding (i.e., backgro
229 nsensus regulatory element comprising a STAT-binding sequence overlapped by a binding-site for the tr
230 y base pairing occurs between the HIV primer binding sequence (PBS) and the tRNA's 3'-terminus, an im
231 ptidase activity: mutations in its ubiquitin-binding sequences positioned within the ubiquitin-specif
233 h, called DeBooster, to accurately model the binding sequence preferences and identify the correspond
234 70) signatures, and deletion of the sigma(E) binding sequence prevented transcriptional activation of
235 nd that peptides containing the RGD integrin-binding sequence produce sustained vasodilatation of rat
236 ndicate that TH has a different co-substrate binding sequence (pterin + O(2) + L-tyr) than PAH (L-phe
237 mutation of a nucleotide in the middle of a binding sequence reduced both the in vitro protein bindi
238 l perturbations of the somatostatin receptor-binding sequence relative to the Re-free disulfide analo
239 of hasS or of the terminator eliminates CovR-binding sequences, relieving repression and increasing r
241 -pre-mRNA interactions, based on intron-exon binding sequences, result in reduced abundance of splice
242 isrupts the mirror image symmetry of the p53-binding sequence, resulting in decreased binding to p53,
243 , we extended EKEKEKE-PPPPC-Am with the cell-binding sequence RGD and demonstrated control over speci
244 as repressing complexes to their cognate DNA-binding sequence(s) (DBS) in the TSLP promoter regulator
246 at the nonreducing end and two contiguous AT-binding sequences separated by a nonsulfated iduronate r
248 y between the two ends of the 23-mer minimal binding sequence, showing an unprecedented influence of
250 Cis-regulatory modules (CRMs) function by binding sequence specific transcription factors, but the
252 anscription of ER stress response genes upon binding sequence specifically to ER stress response enha
253 protein p53 acts as a transcription factor, binding sequence-specifically to defined DNA sites, ther
254 anscription of ER stress response genes upon binding sequence-specifically to ER stress response enha
255 RNA interactions combined with a fluorophore-binding sequence 'Spinach', a GFP-like RNA aptamer for w
257 in domain and significant clustering of SeqA-binding sequences, suggesting a role for SeqA in cluster
258 at CpG dinucleotides flanking the NF-kappaB-binding sequence, supporting that this active DNA demeth
260 evolutionary conservation of Pitx2 consensus binding sequence, TAATCY, on the -20 kb, intronic and co
261 evolutionary conservation of Pitx2 consensus binding sequence, TAATCY, on the -20kb, intronic, and co
262 pn-2) and PlexinA3 (PlexA3) through an Npn-2-binding sequence (TARNER) in the extracellular Ig1 domai
263 pend on residues upstream from the canonical binding sequence that are likely to interact with flexib
264 urexin sequence with an unrelated PDZ-domain binding sequence that does not bind to CASK fully restor
265 aMKIIdelta 3'UTR contains a consensus miR-30 binding sequence that is highly conserved across species
266 ototypic traits of a glycosaminoglycan (GAG) binding sequence that mediates Otx2 binding to PNNs, and
267 selection of targets identified a DACH1 DNA-binding sequence that resembles the FOX (Forkhead box-co
268 rus LANA and prototype foamy virus chromatin-binding sequences that blocked nucleosome association fa
269 ntage of the unique conserved Trp within CaM-binding sequences that functions as a hydrophobic anchor
270 at PPE41 contains a characteristic chaperone-binding sequence, the hh motif, which is highly conserve
271 in vivo expression of the TSP1 calreticulin-binding sequence to determine the role of TSP1 in tissue
272 beta-glucosidase (glucocerbrosidase (GCase)) binding sequence to LIMP-2 (lysosomal integral membrane
273 clamp zones recruit proteins bearing a clamp-binding sequence to replication foci, the results highli
274 tion of a DNA fragment containing the kappaB binding sequence to the IkappaBalpha-NF-kappaB complex r
276 to the exponential increase in the number of binding sequences to be evaluated for longer binding sit
277 ndogenous kinase substrates and known Tb(3+)-binding sequences to build a generalizable in silico pip
279 The N- and C-domains contain the nucleotide-binding sequences Walker A and Walker B, respectively.
281 eptide incorporating a fibronectin II insert-binding sequence was constructed and found to selectivel
284 is using promoter fusions revealed that this binding sequence was required for Fe-Fur-mediated activa
287 luronan mediated motility (RHAMM) hyaluronan binding sequences, was the most effective inhibitor.
288 tional approximately 10,000 unique HNF4alpha-binding sequences; we also identify new rules for HNF4al
289 made in both half sites of a palindromic Fis binding sequence were examined for their effects on the
290 ger deletions that extended beyond the TALEN-binding sequences were also detected and were similarly
292 o acids in the alpha-helix of the calmodulin binding sequence, which disrupts kinase binding to calmo
293 Ac-d-Trp-PheNH(2) appeared to be the minimal binding sequence, while Ac-d-Trp-Phe-GlyNH(2) emerged as
294 modified GAL1 promoter containing six Zif268 binding sequences (with single nucleotide spacing) was s
297 tional fusions constructed from specific Fur binding sequences within the fur promoter/operator regio
298 ion mixture is to outcompete any nonspecific binding sequences within the initial library, thus allow
299 tted across transmembrane integrins onto RGD binding sequences within the tenth FN type III (10FNIII)
300 at did or did not contain the IE62 consensus binding sequence yielded K(D) (equilibrium dissociation
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