ライフサイエンスコーパス: binning

1 very rate compared with approaches based on "binning".

2 the sample fragments, a procedure known as 'binning'.

3 described here involve torsion matching and binning.

4 es an alternative to the current practice of binning.

5 g in markedly improved performance of contig binning.

6 OTU clustering is also referred to as binning.

7 ing methods to enable more accurate sequence binning.

8 as user-specified PDFs without the need for binning.

9 ias the results against weighted statistical binning.

10 ument does not apply to weighted statistical binning.

11 metagenomic data using differential coverage binning.

12 Our method also has a high accuracy in read binning.

13 formance to manual peak deconvolution and to binning.

14 assembly, and multidimensional phylogenetic binning.

15 on regardless of the downstream smoothing or binning.

16 processing steps, such as peak alignment and binning.

17 cluding reference deconvolution and spectral binning.

18 Binning 16S rRNA sequences into operational taxonomic un

19 ors in competitive binding assays by epitope binning a panel of antibodies.

20 ecovering more bacterial genomes compared to binning a single sample as well as comparing the microbi

21 proves the state of the art in terms of both binning accuracies and the scope of applicability.

22 proposed approach achieves a higher species binning accuracy and is particularly powerful when seque

23 embraces customized knowledge to facilitate binning accuracy.

24 program, and consistent peak extraction plus binning across a study set.

25 Our barcode-based metagenome binning algorithm substantially improves the state of th

26 is sequencer and used a variant of the phred binning algorithm to combine them into a single empirica

27 Here we present an expanded binning algorithm, MaxBin 2.0, which recovers genomes fr

28 Many binning algorithms have been developed, but their perfor

29 of selected regions of interest and by pixel binning along the spectral direction.

30 Differential coverage binning analysis revealed significant ARG enrichment in

31 hrough single-contig refinement by iterative-binning and -assembly of reads.

32 combination of morphology-based phylogenetic binning and a multiresponse permutation procedure to tes

33 sing state-of-the-art metagenomic population binning and catalyzed reporter deposition fluorescence i

34 e antigen, and facilitating detailed epitope binning and mapping studies.

35 Metagenomic binning and metaproteomic analysis of this deep subsurfa

36 ction of recombinant chromosomes useful as a binning and ordering resource for YAC-based physical map

37 Metagenomic binning and phylogenetic analysis revealed that two anam

38 , such as MySQL multi-column indexing, MySQL binning and R-Tree indexing.

39 ds were classified taxonomically (by genomic binning) and functionally (using Kyoto Encyclopedia of G

40 thods: (1) background subtraction, (2) pixel binning, and (3) CMOS color channel selection.

41 via metagenomic, metatranscriptomic, genomic binning, and geochemical analyses from Axial Seamount, a

42 thod constitutes a powerful tool for epitope binning, and in our case allowed development of a sandwi

43 ve used a combination of metagenomic, genome binning, and stimulus-induced metatranscriptomic approac

44 We previously developed MaxBin, an automated binning approach for high-throughput recovery of microbi

45 We present a novel binning approach for large scale joint variant calling a

46 eal datasets in comparison with state-of-art binning approaches such as CONCOCT, GroopM, MaxBin and M

47 er textural features by applying 5 different binning approaches.

48 ethods for assembly, taxonomic profiling and binning are key to interpreting metagenome data, but a l

49 ut any distribution assumption, corrects for binning artifacts, and provides improved statistical pow

50 community structure and function, automated binning, as well as genomic signature-based visualizatio

51 To investigate their taxonomic structure, binning assembled contigs into discrete clusters is crit

52 ndependent approach called MBBC (Metagenomic Binning Based on Clustering) to cluster environmental sh

53 Thus, naive binning can improve phylogenomic analysis in the presenc

54 Conversely, alignment and binning can introduce artefacts and limit immediate biol

55 Binning cells according to total ERK expression revealed

56 Here we present a method, based on binning co-abundant genes across a series of metagenomic

57 re used to establish 3 predictive models per binning configuration: one model based on a combination

58 y investigating the application of different binning criteria.

59 Binning cutoffs for each sample type are chosen automati

60 Pairwise epitope binning data from the ProteOn 36-ligand array format and

61 Binning environmental shotgun reads is one of the most f

62 In metagenomic contig binning, Hetero-RP automatically weighs abundance and co

63 Binning, however, does have several advantages.

64 Genomic binning identified key populations of SUP05, Aquificales

65 Statistical binning improves the accuracy of MP-EST, a popular coale

66 comparable to the state-of-the-art Bayesian Binning in Quantiles (BBQ) method when the SVM models ar

67 ment and linkage information further improve binning in the majority of cases.

68 In addition, a binning-independent model based on ex vivo and patient i

69 correspondence between torsion matching and binning is 99% (per residue).

70 Binning is a classification technique based on distribut

71 e improvement over traditional nonparametric binning is twofold and associated with enhanced resoluti

72 each allele in the sample (allele calling or binning) is therefore an absolute requirement.

73 conductance measurements and demonstrate how binning measurements according to smear can significantl

74 We have developed a novel method for binning metagenomic reads based on clustering.

75 eloped a dynamic programming algorithm based binning method for ARISA data analysis which minimizes t

76 In addition, the binning method lends itself to a natural graphical repre

77 We present a binning method that incorporates bacterial DNA methylati

78 While dozens of binning methods are available, there is still room for i

79 s not output whole genomes, so computational binning methods have been developed to cluster sequences

80 Furthermore, existing binning methods usually require a priori decisions regar

81 us research, for both conditions logarithmic binning methods were consistent with Levy flights and ra

82 ssembler, SPAdes, in combination with contig binning methods, allowed the reconstruction of genomes f

83 Existing binning methods, based on nucleotide composition or alig

84 d (PhyloPythia, oligonucleotide frequencies) binning methods.

85 ome, MGIIa_P, was recovered using metagenome binning methods.

86 dily separated morphologically, the combined binning/multiresponse permutation procedure showed that

87 We show that all forms of binning-naive, statistical, and weighted statistical-dis

88 netic anchors can improve assembly-dependent binning needed for more accurate taxonomic and functiona

89 This binning of cosmids facilitated the subsequent fingerprin

90 s of the receptor-ligand complex facilitates binning of ER modulators into distinct groups based on s

91 it can potentially facilitate the downstream binning of genomic fragments into uniform clusters refle

92 detail by arbitrarily controlling the pixel-binning of the masks.

93 is of organism-specific metabolic networks, 'binning' of metagenomes and other biological problems ar

94 Pooling ('binning') of related haplotypes did not increase differe

95 previously described methods of metagenomic binning or metagenomic assembly and represents a fundame

96 PCA, in combination with data binning or other reduction algorithms, has been widely u

97 We term this approach "binning" or "tiling" depending on the type of m/z window

98 low-coverage sequencing (<0.1x), performing 'binning' or 'windowing' on mapped short sequences ('read

99 e trains on a millisecond time scale without binning over time or space.

100 PCR-ME genetic profiles were analyzed using binning palettes generated from two sets of allelic ladd

101 Using these binning palettes, no allele calling errors were detected

102 usually require a priori decisions regarding binning parameters such as a distance level for defining

103 and Index), [Formula: see text] improves the binning performance in 28 out of 30 testing experiments

104 ressing two challenging problems: metagenome binning problem and identification of horizontally trans

105 le approximations based on the nature of the binning process and the transformation rules for probabi

106 Assembly and genome binning programs performed well for species represented

107 Taxonomic profiling and binning programs were proficient at high taxonomic ranks

108 does not follow the recommended statistical binning protocol and has data of unknown origin that bia

109 ervariable regions of 16S rRNA were used and binning results were compared.

110 Formula: see text] was applied to adjust the binning results.

111 sually >/=10 samples, to get highly accurate binning results.

112 single metagenomic samples to obtain better binning results.

113 sis to 93.9% with smear characterization and binning (SCRIB).

114 study, a new statistical method, probability binning signature quadratic form (PB-sQF), was developed

115 fers a library of operations (normalization, binning, smoothing) to process raw data into visualizabl

116 ificial chromosome (YAC)-based isolation and binning strategy.

117 Epitope binning studies showed that the majority of neutralizing

118 single nanocrystals, ranging from intensity "binning" techniques to more sophisticated methods based

119 ale-invariance was recovered using 'adaptive binning', that is identifying clusters at temporal resol

120 ormation is not significantly compromised by binning the continuous torsional information into a limi

121 e level searching rather than hard cutoff or binning, the use of non-parametric methods to fine-tune

122 Mirarab et al. introduced statistical binning to improve the signal in phylogenetic methods us

123 First, FogBank uses histogram binning to quantize pixel intensities which minimizes th

124 With many binning tools available, we do not try to bin contigs fr

125 s among bins based on the output of existing binning tools for a single metagenomic sample.

126 text] can be applied to any existing contig-binning tools for single metagenomic samples to obtain b

127 nce of [Formula: see text], five widely used binning tools with different strategies of sequence comp

128 of 30 testing experiments (6 datasets with 5 binning tools).

129 In addition to genome binning, we show that our method links plasmids and othe

130 rgue against the use of weighted statistical binning within a species tree estimation pipeline.