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1 ops (nodal) and schmalspur, but not no tail (brachyury).
2 at express the pan-mesodermal gene, no tail (Brachyury).
3 expression of mesoderm markers, including T (Brachyury).
4 idates for direct transcriptional targets of Brachyury.
5 overlap with those of several Wnt genes and brachyury.
6 have screened for downstream target genes of Brachyury.
7 may assist in the search for target genes of Brachyury.
8 of other genes compensating for the loss of Brachyury.
9 sis of tumor cells expressing high levels of brachyury.
10 s mediated by a key developmental regulator--Brachyury.
11 types produced by loss of the conserved gene brachyury.
12 d the pan-mesodermal expression territory of Brachyury.
13 e that hypoxia accelerates the expression of Brachyury (a mesoderm-specific transcription factor), BM
17 in mesoderm differentiation and induction of Brachyury, a transcription factor essential for mesoderm
18 pression, we demonstrate that high levels of brachyury also significantly reduce the susceptibility o
19 subpopulation of mesoderm that co-expresses brachyury (also known as T) and Flk-1 (also known as Kdr
20 positive feedback loops, GATA factors, SoxB, Brachyury and a previously underemphasised role for beta
21 t signalling, while high-level FGF maintains Brachyury and can induce ectopic CNH-like cell foci.
23 rved DNA-binding motif originally defined in Brachyury and characteristic of the Tbx family of transc
24 neural factor Sox2 and the mesodermal factor Brachyury and differentiate into neural and paraxial mes
25 reconstitution with WT Shp-2, expression of brachyury and flk-1 and differentiation to hemangioblast
27 use embryos have shown that co-expression of Brachyury and FoxA class transcription factors is requir
28 vidence of a synergistic interaction between Brachyury and FoxA in the activation of an individual no
29 expressed by the endoderm downstream of the Brachyury and FoxA transcription factors in the endomeso
31 in the second wave of expression, including Brachyury and Mixer, contribute to the regulation of gen
34 mong a subfamily of T-box proteins including Brachyury and Tbx10, and among additional nuclear protei
35 wo T-box transcription factors-No tail (Ntl)/Brachyury and Tbx16/Spadetail-cooperatively regulate an
38 pilin-1 (NRP-1) coincides with expression of Brachyury and VEGFR-2 and identifies endothelial precurs
39 oposed correlation between the expression of Brachyury and Wnt3, two genes reported as expressed radi
41 lated in mouse ES cells by the binding of T (Brachyury) and STAT3 to an enhancer element in the mouse
45 Some of the endodermal genes that respond to Brachyury are cytoskeletal modulators that may play a ro
46 itional colonies indicated that they express Brachyury as well as flk-1, SCL/tal-1, GATA-1, (beta)H1
47 nic analysis of the T promoter identifies T (Brachyury) as a direct transcriptional target of the Wnt
48 RNA population from embryos that mis-express brachyury at a stage just prior to the normal onset of e
49 sequence population from embryos expressing brachyury at its peak stage of expression was subtracted
50 ors uniquely establish their own niche--with Brachyury being essential for creating a domain of high
51 show that TBX5 binds to the full palindromic Brachyury binding site and to the half-palindrome, where
54 ts that if the target gene contains multiple Brachyury-binding sites it will be activated early in de
57 ne invertebrate, an essential protein called Brachyury binds to specific sites in its target genes.
60 date embryos, the T-box transcription factor Brachyury (Bra) is required for specification and differ
61 of the embryo and consequently tail length: Brachyury, Brachyury the second, and the t-complex tail
62 ic background, such as that of Black and Tan Brachyury (BTBR) mice (a previously reported autism mode
64 as identified some direct genomic targets of Brachyury, but little is known about Brachyury targets i
65 in no binding site can still be activated by Brachyury, but only indirectly by an earlier Brachyury-d
66 solution chromosomal localization mapping of Brachyury by ChIP sequencing and ChIP-exonuclease reveal
68 developmental expression patterns of Notch, brachyury, caudal, and eight Wnt genes have now been det
70 tion of cells generated from activin-induced brachyury(+) cells to the kidney capsule of recipient mi
74 pstream of the known enhancer that regulates Brachyury (Ci-Bra), a key determinant of notochord speci
79 pment including somite formation, we used T (Brachyury)-Cre mouse line to inactivate Dicer in most ce
80 hat the stromal cells express proteins (Scl, brachyury, Csf-1R, Gata-1, Flk-1, and Tie-2) that charac
81 Brachyury, but only indirectly by an earlier Brachyury-dependent gene product, so later than the dire
82 evolutionary comparison unveiled a detailed Brachyury-dependent gene-regulatory network that directl
86 embryo, thereby providing insights into the Brachyury-driven genetic regulatory network and allowing
87 ntify genes that are expressed downstream of brachyury during gastrulation of the sea urchin embryo.
88 on, we show that the only essential role for Brachyury during somite formation is non-cell autonomous
90 is of en route cell populations by utilizing Brachyury, Etv2, or Scl reporter embryonic stem cell lin
92 the animal, separated from the anterior oral brachyury-expressing region by a dorsal domain of ectode
93 e UTX KO embryos show severe defects in both Brachyury expression and embryonic development of mesode
96 ychodera and, by comparison with patterns of Brachyury expression in the indirect development of echi
98 age of human lung tumor tissues positive for Brachyury expression increased with the stage of the tum
99 at UTX controls mesoderm differentiation and Brachyury expression independent of H3K27 demethylase ac
100 , UTX regulates mesoderm differentiation and Brachyury expression independent of its enzymatic activi
105 cell colonies in that they typically lacked Brachyury expression, consistent with their post-mesoder
106 vel genetic interaction in which Mix induces Brachyury expression, standing in contrast to the relati
107 nstituted ES cells to mesoderm, by measuring brachyury expression, to hemangioblasts, by measuring bl
108 nic cancer cell lines with various levels of brachyury expression, we demonstrate that high levels of
113 We propose that caudal/Cdx, brachyenteron/Brachyury, fork head/HNF-3, and wingless/Wnt constitute
115 gene-regulatory feedback loop consisting of Brachyury, Foxa2, and Sox17 directs proper stem-cell lin
116 how that sudden loss of the mesodermal gene (Brachyury) from CNH and the mesoderm progenitor domain c
117 with message sequence from embryos in which Brachyury function had been "knocked-out" by injection o
119 in gastrulation induced by interfering with Brachyury function in sea urchins, and with known or sug
120 ial candidate for complementing or extending Brachyury function in the anterior axis (formation of th
122 -8/18, carbonic anhydrase-12, and NC markers brachyury, galectin-3 and CD24 in cells of the NP irresp
123 iptomic data, immunolocalization of EOMES, T brachyury, GDF15 and active beta-catenin revealed differ
125 hancer from the promoter region of the Ciona Brachyury gene (Ci-Bra), which is sufficient to direct a
128 d in this study with that of the orthologous Brachyury gene in an indirectly developing enteropneust
129 loss of Fgf8b disrupts the induction of the brachyury gene in the pregastrular embryo and, in additi
130 hese results and other data suggest that the brachyury gene transduces information about the state of
131 lopment, inducing the mesodermally expressed brachyury gene up to 10 cell diameters from a localised
135 xpressing P19 cells resulted in decreased T (Brachyury) gene expression, a DNA-binding transcription
136 The duplicated region contains only the T (brachyury) gene, which is important in notochord develop
140 strated that FGF-2 induced the expression of brachyury, goosecoid, and myo-D in regions of treated ex
141 s enhancer contains two sets of low-affinity Brachyury half-sites, which are bound in vitro by a GST/
144 Our results indicated that resistance of brachyury-high tumor cells to immune-mediated attack was
145 gut development; within this region maps the Brachyury homolog T-related gene (Trg), DNA of which res
146 yses have shown that the genes no tail (ntl, Brachyury homolog), floating head (flh, a Not homeobox g
147 ce between unicellular holozoan and metazoan Brachyury homologs, suggesting that the specificity of B
148 escued by coinjection of the T-box gene ntl (Brachyury homologue), which is typically required for th
151 ays 7.5 and 8.5 expressed both HNF-3beta and Brachyury in a pattern similar to those of pre- and earl
154 promoter microarrays to identify targets of Brachyury in embryoid bodies formed from differentiating
156 expression of the T-box transcription factor brachyury in human carcinomas drives the phenomenon of e
157 Our results point to an ancient role for brachyury in morphogenesis, cell polarity and the patter
158 phenotype, demonstrating an ancient role for Brachyury in patterning all but the most anterior somite
161 T(c) mouse model supports a crucial role of Brachyury in up-regulating multiple key hematopoietic an
162 this problem in our analysis of the role of Brachyury in Xenopus development, we have, like Kolm and
164 unction of no tail (ntl, homologous to mouse brachyury) in DFCs without affecting its expression in o
166 on of the key notochord transcription factor Brachyury, indicating that Brachyury is not a notochord
167 C genes are likely to be indirect targets of Brachyury-induced signaling from the surrounding endoder
168 we show that the T-box transcription factor Brachyury induces in tumor cells epithelial-mesenchymal
174 a overexpression of the transcription factor Brachyury is associated with enhanced secretion of multi
177 the primitive streak and tail bud, although Brachyury is expressed earlier in the primitive streak.
178 In ascidians, such as Ciona intestinalis, Brachyury is expressed exclusively in the notochord and
180 n embryos dissected between 5.5 and 6.5 dpc, Brachyury is first expressed in the distal extra-embryon
181 nscription factor Brachyury, indicating that Brachyury is not a notochord master regulator gene as st
182 the ascidian Ciona, in which the single-copy Brachyury is notochord-specific and CRMs are easily iden
184 It is known that the transcription factor Brachyury is required for notochord formation in all cho
188 mpensation and the recent demonstration that Brachyury is the prototype for an evolutionarily conserv
190 e associated with dorsal mesoderm formation, brachyury, is expressed normally in alpha6 integrin-pert
193 movements during gastrulation [no tail (ntl)/brachyury, knypek (kny) and pipetail (ppt)/wnt5] interac
195 he green fluorescent protein targeted to the brachyury locus demonstrates that the haemangioblast is
196 (ntl), the zebrafish homologue of the mouse Brachyury locus, display severe defects in midline and m
197 uorescent protein (GFP) cDNA targeted to the brachyury locus, we demonstrate that endoderm develops f
199 e in EMT and cancer progression suggest that Brachyury may be an attractive target for antitumor ther
200 esults thus chart a comprehensive map of the Brachyury-mediated gene-regulatory network and how it in
204 Analysis of the spatial distribution of brachyury(+) midline cells shows that the Cfl1 mutant mi
205 ur results suggest that Wnt3a, signaling via Brachyury, modulates a balance between mesodermal and ne
207 Axin2, Fgf8 and Wnt3a, is down regulated in Brachyury mutant embryos and we demonstrate that they ar
209 as the spadetail mutant of zebrafish and the Brachyury mutant of the mouse, which both similarly exhi
210 fish tbx16/spadetail, nieuwkoid/bozozok, and Brachyury/no tail genes with dsRNA from the bacterial la
213 s targeting the zebrafish golden and no tail/Brachyury (ntl) genes and developed a budding yeast-base
214 FGF signaling represses the NMP markers brachyury (ntla) and sox2 through regulation of tbx16 an
215 rate functional conservation of a homolog of Brachyury of the protist Capsaspora owczarzaki in Xenopu
219 ranscription factors spadetail (spt) and the brachyury ortholog no tail (ntl) are together essential
220 mbryo, represses expression of the zebrafish brachyury ortholog no tail (ntl), causing a failure to s
221 es the expression of an ectopic patch of the brachyury ortholog no tail and leads to the formation of
222 studies of mouse Brachyury and the zebrafish Brachyury ortholog Ntl indicated that Brachyury plays a
224 of the mesenchymal and invasive features of Brachyury-overexpressing tumor cells and show that IL-8
226 ed the importance of HS for the induction of Brachyury(+) pan-mesoderm as well as normal gene express
227 xtinguished in mutant embryos as soon as the Brachyury phenotype becomes evident at 8.5 days postcoit
228 rafish Brachyury ortholog Ntl indicated that Brachyury plays a more significant role in higher verteb
229 p is a direct target gene of Ci-Bra and that Brachyury plays an immediate role in the cellular morpho
230 we demonstrate that endoderm develops from a brachyury(+) population that also displays mesoderm pote
236 notably the muscle specifier Macho-1 and 50 Brachyury-regulated notochord genes, as well as several
237 ta significantly change the understanding of Brachyury regulation in Xenopus, implying the existence
239 hat the zebrafish tbx6 gene, a member of the Brachyury-related T-box family of genes, is exclusively
240 ntage of the system to provide evidence that Brachyury represses neural differentiation and that sign
242 the binding preferences of the C. owczarzaki Brachyury results in a similar motif to that of metazoan
243 homozygous mutants, indicating that loss of brachyury results in stochastic fate transformation.
244 transcription activator of both Myc-Max and Brachyury site-containing reporters in a Max-dependent m
245 vity and expression of the mesodermal marker brachyury, suggesting that ERK1 can compensate for ERK2
246 p1, Ncdn and Nrp-1), transcriptional factor (Brachyury T), and cell surface receptors (CD24, CD90, CD
247 ebrate 'mesodermal' genes, such as nodal and brachyury T, are likely to ancestrally have been involve
248 Bmp-4), and the transcription factors of the Brachyury T-Box family (Tbx2-Tbx5) and Lung Kruppel-like
249 afish spadetail (spt)/VegT and no tail (ntl)/Brachyury T-box genes are semi-redundantly and cell-auto
250 be detected during the transitory phase from Brachyury (T) (+) mesendoderm toward a CXCR4 (+) DE stat
253 onal analysis has demonstrated that Fgf8 and Brachyury (T) are required for normal mesoderm and left-
255 ouse conceptuses homozygous for mutations in brachyury (T) exhibit a short, misshapen allantois that
256 In addition, CD protein (CD24 and CD90) and Brachyury (T) expression in immature disc cells were als
264 ications in notochordal transcription factor brachyury (T), PI3K signalling mutations, and mutations
268 of mesodermal markers prior to expression of Brachyury/T and acceleration of the mesodermal developme
269 This leads to a graded repression of the Brachyury/T transcription factor, reducing mesoderm ingr
270 s essential for its biological function, but Brachyury target genes have proved difficult to identify
277 ryo and consequently tail length: Brachyury, Brachyury the second, and the t-complex tail interaction
278 We previously noted that the chick T gene (Brachyury), the prototypical T-box transcription factor,
282 network that directly links the function of Brachyury to diverse developmental pathways and cellular
283 analyses of the expression of HNF-3beta and Brachyury, two molecular markers for gastrulation, showe
285 of FGF/Erk signalling mediates this loss of Brachyury upstream of Wnt signalling, while high-level F
287 ue of the T-box family transcription factor, Brachyury, was cloned through a candidate gene approach.
288 regulation of the T-box transcription factor brachyury We find in zebrafish that FGF is continuously
291 e find that the genes caudal, orthopedia and brachyury-which are expressed in various bilaterian hind
292 age of immature NP cells expressing CD24 and Brachyury, while higher percentage of immature AF cells
293 ing the molecular phenotype of C. owczarzaki Brachyury with that of homologs of early branching metaz
294 d interaction of the family members Tbx3 and Brachyury with the CRM1 exporter, suggesting general sig
295 of the early vertebrate embryo depends on a Brachyury/Wnt autoregulatory loop within the posterior m
296 the polarized expression domains of Xenopus brachyury (Xbra) and Xenopus nodal-related factor 2 (Xnr
298 expression of the general mesodermal marker Brachyury (Xbra) requires a zygotic, ligand-dependent Wn
299 at confers mesodermal identity in Xenopus is Brachyury (Xbra), which is required for normal gastrulat
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