ライフサイエンスコーパス: browser

1 their genomic context on the Ensembl genome browser.

2 through an interactive, multi-tissue network browser.

3 and further explored in the WashU Epigenome Browser.

4 interactions and adopted the JBrowse genome browser.

5 nomics datasets via links to the UCSC genome browser.

6 Requires R and a modern web browser.

7 The output can be filtered and sorted in the browser.

8 nder two conditions is also available in the browser.

9 s to display our SNP data in the UCSC genome browser.

10 isplaying protein sequence features in a Web browser.

11 mapped 3D image data in the context of a web browser.

12 the cDNA coverage plots, in an online genome browser.

13 resolution DNA methylation data on a genome browser.

14 elopmental enhancers from the VISTA Enhancer Browser.

15 visualization environment in any modern web browser.

16 e University of California Santa Cruz Genome Browser.

17 an be intuitively explored: the HIV mutation browser.

18 , search tools and GBrowse, a popular genome browser.

19 e University of California Santa Cruz Genome Browser.

20 ublish novel transcriptomes using only a web browser.

21 interactive tools such as Integrated Genome Browser.

22 ainst the human genome using the UCSC genome browser.

23 nd https://github.com/angell1117/STAR-genome-browser.

24 t for rapid visualization in the UCSC genome browser.

25 and genomic visualization via a multi-genome browser.

26 iation data and associated metadata in a web browser.

27 to biological pathways using a standard web browser.

28 enome Browser and on an early-access Preview Browser.

29 volume data in the context of a standard web-browser.

30 ges, a powerful query engine and rich genome browser.

31 pg.de and can be accessed using any internet browser.

32 ted/created and links out to the UCSC genome browser.

33 s to the DAPAR functionalities through a web browser.

34 es are easily visualized directly in the web browser.

35 is open source and runs through R and a web browser.

36 with any programming language or viewed in a browser.

37 ly available via the web using any major web browser.

38 eractive and fast open source desktop genome browser.

39 make available through the slncky Evolution Browser.

40 available via a user friendly Transcriptome browser.

41 ntific applications that run directly on web browsers.

42 PathwayMapper, which runs in most common web browsers.

43 enome-based view common to most current read browsers.

44 otspots can be visualized directly in genome browsers.

45 ble to or better than those of common genome browsers.

46 erl and SQLite and is compatible with modern browsers.

47 allelic tracks ready to be viewed on genome browsers.

48 users to create their own visualizations and browsers.

49 isualized on both linear and circular genome browsers.

50 richment analysis and exploration via genome browsers.

51 gle Chrome, Apple Safari and Mozilla Firefox browsers.

52 rotein structure visualization in modern web browsers.

53 not be easily rendered using standard genome browsers.

54 imensional (3D) structure of proteins in web browsers.

55 and supports most major HTML5 compliant web browsers.

56 for mobile genetic elements in public genome browsers.

57 rich genome context provided by UCSC genome browsers.

58 provided via direct links to the UCSC genome browsers.

59 -node data annotations or even simple genome browsers.

60 ailable at http://epigenomegateway.wustl.edu/browser/.

61 terms/codes, the availability of terminology browsers, a recommended list of codes and mechanisms to

62 Current sequence alignment browsers allow visualization of large and complex next-g

63 Though several tools, including genome browsers, allow such comparison at a single gene level,

64 an interactive application running in a web browser allowing fast exploration of large-scale populat

65 Additionally, we have provided a web browser allowing interactive exploration of the dataset,

66 Canvas, are now supported by most modern web browsers allowing the blossoming of powerful visualizati

67 JBrowse is a web-based genome browser, allowing many sources of data to be visualized,

68 The gEVAL browser allows the user to interrogate an assembly in an

69 of gene targeting vectors in the same genome browser, along with gene models, protein translation and

70 The Browser also includes many other widely used tools, incl

71 We present the Genome Tolerance Browser: an online genome browser for visualizing the pr

72 graphical user interface with a suite of in-browser analysis tools that range from providing simple

73 rsity of California Santa Cruz (UCSC) Genome Browser and accessed through the familiar browser interf

74 the visualization of graphical maps within a browser and allows the user to draw new primers directly

75 Kappa simulator, one running directly in the browser and another running in the cloud.

76 can be used as a variant calling format file browser and as a tool to compare different genome assemb

77 e on the web at http://wanglab.ucsd.edu/star/browser and https://github.com/angell1117/STAR-genome-br

78 say record page, new BioAssay classification browser and new features in the Upload system facilitati

79 ilable on the quality-reviewed public Genome Browser and on an early-access Preview Browser.

80 to public ontologies, developed an ontology browser and released new single nucleotide polymorphism

81 microbiome data that runs on any modern Web browser and requires no programming, increasing the acce

82 1KG variants can be accessed through a browser and through the raw and annotated data that are

83 lation instance is accessible both via a web browser and through the web application programming inte

84 racking System (GONUTS) is a community-based browser and usage guide for Gene Ontology (GO) terms and

85 OMA can be accessed through the OMA Browser and various programmatic interfaces at http://om

86 New genome browsers and annotation tools based on JBrowse/WebApollo

87 ill be accessible via organism pages, genome browsers and BLAST search engines, which are implemented

88 ly in JavaScript, compatible with modern web browsers and does not require any specialized software.

89 Differences were also observed between browsers and grazers as well as between carnivores that

90 with two functional types of mammals: large browsers and medium-sized mixed feeders.

91 It has been tested on the most popular web browsers and requires Java plugin for Jmol visualization

92 use on all computer systems with modern web browsers and requires no software installation.

93 Unlike previous genome browsers and viewers, ours allows for simultaneous and c

94 However, existing genome browsers and visualization tools are not well-suited to

95 Epiviz, a web-based genome browser, and the Epivizr Bioconductor package allow inte

96 species can be explored via dedicated genome browsers, and searched by Blast.

97 service that uses JavaScript to generate in-browser animations of biogeographic and phylogeographic

98 Genome browsers are a common tool used by biologists to visuali

99 Current genome browsers are designed to work via graphical user interfa

100 owever, current tools such as various genome browsers are highly specialized to handle intraspecies m

101 All major browsers are supported.

102 redictions for comparison, visualized in the browser as circle plots and topology diagrams.

103 le and are accessible through a powerful web browser as well as a variety of annotation file formats.

104 several bioinformatics tools via the user's browser as well as programmatically via Web Services API

105 Accessible by a Web browser at http://enlight.usc.edu.

106 sembl data are accessible through the genome browser at http://www.ensembl.org and through other tool

107 ecessarily desirable, that the public genome browsers attempt to curate all these data.

108 as an integrated part of the Artemis genome browser, BamView allows the user to study NGS data in th

109 heatmap features, and an updated Tumor Image Browser based on Google Maps.

110 Here, we describe a novel genome browser based on the Biodalliance platform developed to

111 3D datasets, very few are easily accessible (browser based), cross platform and accessible to non-exp

112 opFly, a population genomics-oriented genome browser, based on JBrowse software, that contains a comp

113 output readily available, we developed a web browser-based application that visualizes antigenic data

114 We have developed a web browser-based desktop application for interactively visu

115 P: ileup.js is a new browser-based genome viewer.

116 se by laboratory scientists, consisting of a browser-based interface and server-side components which

117 sed strain analysis can be performed using a browser-based interface.

118 virtual screening queries in an interactive browser-based interface.

119 ave thus developed a processing pipeline and browser-based visualization that allows convenient explo

120 CRIPTION: We have developed a database and a browser-based visualization tool, riboviz, that enables

121 sting MS viewers, such as a dependency-free, browser-based, one click, cross-platform install and bet

122 JBrowse is a fast and full-featured genome browser built with JavaScript and HTML5.

123 download data, visualize results on a genome browser, calculate RPKMs (reads per kilobase per million

124 Any modern web browser can submit those tasks and/or volunteer to execu

125 Modern web browsers can now be used as high-performance workstation

126 SNPDelScore comes with a genome browser capable of displaying and comparing large sets o

127 We developed the Comparative Epigenome Browser (CEpBrowser) to allow the public to perform mult

128 rsity effects on foraging by large mammalian browsers comes largely from observational studies while

129 by a diverse range of clients including web browsers, command terminals, programming languages and s

130 display output in a public or private genome browser complete with accessory tools.

131 The browser currently contains 115 archaeal genomes, plus 31

132 The Cancer Genomics Browser currently hosts 575 public datasets from genome-

133 ns than possible with general-purpose genome browsers currently available.

134 draft human genome assembly, the UCSC Genome Browser database and associated tools continue to grow,

135 five-species alignment from the UCSC Genome Browser database, that PhyLAT's alignments are more accu

136 rticle provides an update to the UCSC Genome Browser database, which has been previously featured in

137 Here we introduce Drug/Cell-line Browser (DCB), an online interactive HTML5 data visualiz

138 The current release of the HIV mutation browser describes the phenotypes of 7,608 unique mutatio

139 the web' for DNA sequences and expanded the browser display with stacked color graphs and region hig

140 We support major open source browsers (e.g. Firefox and Chromium/Chrome).

141 We suggest using other browsers (e.g. Google Chrome or Mozilla Firefox) when ac

142 are fully compatible with modern mobile web browsers (e.g., phones and tablets), allowing easy integ

143 and select optimal CRISPR sites in a genome browser environment.

144 s from common genomic data formats including Browser Extensible Data (BED), bedGraph and Browser Exte

145 n tools can convert genome interval files in browser extensible data or general feature format, but n

146 Browser Extensible Data (BED), bedGraph and Browser Extensible Data Paired-End (BEDPE).

147 BAM, sequence alignment map, Wiggle, BigWig, browser extensible data, general feature format, gene tr

148 Here we introduce GEO2Enrichr, a browser extension for extracting differentially expresse

149 e tool, freely available for installation as browser extensions at the Chrome Web Store and FireFox A

150 Finally, we present a splicing browser Eye Splicer, to facilitate exploration of develo

151 first time, individuals can use the complete browser feature set to view custom datasets without the

152 We demonstrate our genome browser for an extensive set of genomic data sets compos

153 Our Genome Browser for DNA shape annotations (GBshape) provides min

154 uced in real time and are linked to a genome browser for easy follow-up analysis.

155 l (www.ensembl.org) is a database and genome browser for enabling research on vertebrate genomes.

156 domains affected by the LSV, on UCSC Genome Browser for further downstream analysis.

157 ing or display the HTML information on a web browser for human users.

158 rom various resources; (ii) an online genome browser for plant lncRNAs based on a platform similar to

159 g with open access to the data and an online browser for results.

160 ts of the past year include the release of a browser for the first new human genome reference assembl

161 A public browser for the integrated display of short-read sequenc

162 ngs to other bioinformatics resources, a new browser for the PDB archive based on Gene Ontology (GO)

163 The web application encompasses a browser for viewing lipid records and a 'tools' section

164 We established a new genome browser for viewing support vector machine-based NOL sco

165 e Genome Tolerance Browser: an online genome browser for visualizing the predicted tolerance of the g

166 s and how to utilize the various (epi)genome browsers for display and initial analysis.

167 e results are presented through standard web browsers for network analysis and interactive exploratio

168 We created browsers for new species (Chinese hamster, elephant shar

169 and custom regions visualization; new genome browsers for three species (brown kiwi, crab-eating maca

170 of this year include new and updated genome browsers for various assemblies, including bonobo and ze

171 Here, we present a lightweight, flexible browser framework to display large population datasets o

172 ftware that can be loaded offline on the web browser from a local copy of the code, or over the inter

173 It is freely available on the Ensembl browser, from the Ensembl Regulation MySQL database serv

174 We released new browser functionality and tools, including improved filt

175 that provide search, data mining, and genome browser functionality, and also by bulk download and web

176 ) and a novel distribution mechanism for the browser (GBiB: Genome Browser in a Box).

177 modENCODE data, available through our Genome Browser, GBrowse.

178 almost-exclusive grazers to almost-exclusive browsers: Grass consumption inferred from mean sequence

179 The DO web browser has been designed for speed, efficiency and robu

180 The UCSC Genome Browser has been under continuous development since its

181 For the past 15 years, the UCSC Genome Browser has served the international research community

182 The Prowler (data browser) has been updated to enable users to more effici

183 Web browsers have long been recognized as potential platform

184 We developed a web browser, HUGIn, to visualize Hi-C data generated from 21

185 ard this end, we developed Integrated Genome Browser (IGB), a highly configurable, interactive and fa

186 platform similar to that of the UCSC Genome Browser; (iii) Integration of transcriptome datasets der

187 ovides 3D molecular visualization in any web browser, improved support for data file download and enh

188 Genome Browser in a Box (GBiB) is a small virtual machine versi

189 tion mechanism for the browser (GBiB: Genome Browser in a Box).

190 of Health (NIH) will continue to improve the Browser in response to user feedback and believes that t

191 into questions that can be asked from a web browser in seconds.

192 the genome-wide level on the WashU EpiGenome Browser in the context of other rich epigenomic datasets

193 These range from web browsers in mobile phones to the most popular micro serv

194 er, in which case users need only have a Web browser installed.

195 s include: a new Mouse Developmental Anatomy Browser; interactive tissue-by-developmental stage and t

196 The TISdb website provides a simple browser interface for query of high-confidence TIS sites

197 e web application has a user-friendly genome-browser interface to facilitate the selection of the bes

198 me Browser and accessed through the familiar browser interface.

199 Both the genome and pathway browsers interface with the EMBL-EBI's Expression Atlas

200 te collections of Web-accessible UCSC Genome Browsers interrelated by an alignment.

201 The Table Browser is a full-featured graphical interface, which al

202 The UCSC Genome Browser is a graphical viewer for genomic data now in it

203 The UCSC Cancer Genomics Browser is a set of web-based tools to display, investig

204 The UCSC Cancer Genomics Browser is a web-based application that integrates relev

205 The Browser is an integrated tool set for visualizing, compa

206 of California, Santa Cruz (UCSC) Interaction Browser is an online tool for biologists to view high-th

207 This browser is designed for the automatic analysis and displ

208 The UCSC Genome Browser is publicly accessible at http://genome.ucsc.edu

209 The VEGA browser is unique in that annotation is updated via the

210 Once GBiB is installed, a standard web browser is used to access the virtual server and add per

211 composition effects on foraging by mammalian browsers is needed to support sustainable management of

212 tools, which include JavaScript-based genome browser (JBrowse) and Basic Local Alignment Search Tool

213 e structures with millions of atoms in a web browser, keep the whole PDB archive in memory or parse i

214 LINCS Canvas Browser (LCB) is an interactive HTML5 web-based software

215 and resulting tree damage by large mammalian browsers may be influenced by the species richness and s

216 rove European access, we have added a Genome Browser mirror hosted at Bielefeld University in Germany

217 rsity of California Santa Cruz (UCSC) Genome Browser offers online public access to a growing databas

218 rsity of California Santa Cruz (UCSC) Genome Browser offers online public access to a growing databas

219 of the columns, either for display in a web browser or in JSON format for subsequent programmatic us

220 user-friendly interface directly from a web browser or via a standardized RESTful web API to allow e

221 y available and accessible through all major browsers or by using the MaConDa web service http://www.

222 ta tracks can be viewed using popular genome browsers or downloaded for local analysis.

223 llecting data anonymously online using a web-browser, others revealed disparity between laboratory re

224 The browser output page provides a 3D interactive display of

225 Additionally, the genome browser permits genome context comparisons, which may be

226 Lastly, the domain browser permits rapid comparison of protein domain organ

227 We introduce HiPub, a seamless Chrome browser plug-in that automatically recognizes, annotates

228 ion of the ensembles using the ActiveICM web browser plugin.

229 f molecular data without the need to install browser plugins or Java.

230 Now home to assemblies for 58 organisms, the Browser presents visualization of annotations mapped to

231 Frequent updates of the genome browser provide VectorBase users with increasing options

232 The HIV mutation browser provides a valuable new resource for the researc

233 The genome browser provides access to published high-throughput dat

234 The Interaction Browser provides an integrative viewing of biological ne

235 The ExAC browser provides gene- and transcript-centric displays o

236 Our browser provides intuitive selection and interactive nav

237 end, the Geography of Genetic Variants (GGV) browser provides maps of allele frequencies in populatio

238 The browser provides whole-genome to base-pair level views o

239 e hub is now a public hub listed on the UCSC browser public hubs Web page.

240 Browsers reduced densities of several common overstory s

241 rying and filtering many thousands of genome browser regions as well as for exporting the data in a v

242 Commercial use of GBiB and the Genome Browser requires a license.

243 ended to democratize our comparative genomic browser resources, serving the broad and growing communi

244 available with a right-click anywhere on the Browser's image.

245 The browser's publicly accessible databases are the backbone

246 The Browser's web-based tools provide an integrated environm

247 The dbGaP Data Browser serves as a third solution, providing researcher

248 stic visualization of the data within genome browser software and identifies relationships present in

249 ource code for the BigWig, BigBed and Genome Browser software is freely available for non-commercial

250 nd ranking statistics, or exported to genome browsers such as those from the 1000 Genomes and UCSC.

251 male lions partly based on prey ecology with browsers, such as giraffe and kudu, mainly consumed in t

252 http://glycopattern.emory.edu with all major browsers supported.

253 at http://instruct.yulab.org with all major browsers supported.

254 is implemented in JavaScript with all modern browsers supported.

255 PostgreSQL, Apache, and Perl, with all major browsers supported.

256 lemented in Python and MySQL, with all major browsers supported.

257 STAR browser system is freely available on the web at http://

258 sity of California, Santa Cruz (UCSC) Genome Browser team has provided continuous support to the inte

259 redesigned to reduce dependency on outdated browser technologies, and the database can now also be q

260 rsity of California Santa Cruz (UCSC) Genome Browser that can be run on a researcher's own computer.

261 sity of California, Santa Cruz (UCSC) genome browser that facilitates integrative analyses of diverse

262 The giraffe (Giraffa camelopardalis) is a browser that uses its extensible tongue to selectively c

263 NB-LRRs and can be accessed through a genome browser that we provide.

264 Genome browsers that support fast navigation through vast datas

265 udes an interface from R to a popular genome browser, the Integrated Genomics Viewer.

266 e-built, customizable and interactive genome browser to aid combined visualization and interpretation

267 ownload of Viral RP protein sequences, and a browser to facilitate the visualization of Viral RPs.

268 e University of California Santa Cruz Genome Browser to investigate the genomic characteristics of th

269 ed 'track data hubs', which allow the Genome Browser to provide access to remotely located sets of an

270 h information, MeT-DB also provides a genome browser to query and visualize context-specific m(6)A me

271 rovided by RPF, RPFdb also provides a genome browser to query and visualize context-specific translat

272 genomic sequences; (iv) an intuitive genome browser to support visualization of user-selected data;

273 This generates a custom Web browser to visualize, sort, and filter the RNA-seq data

274 gine on the Chrome and Internet Explorer web browsers to identify suppliers selling selective androge

275 res and demonstrate the application of these browsers to stem cell biology.

276 shape annotations qualitatively in a genome browser track format, and to download quantitative value

277 ctions are freely available as a UCSC Genome Browser track, which we hope will enable researchers to

278 Software and genome browser tracks are at http://noble.gs.washington.edu/pro

279 xons, and known/novel splice-junctions), and browser tracks.

280 gorization of searches, data sets and genome browser tracks; redesigned gene pages; effective integra

281 rdware-accelerated applications in the local browser undermine the feasibility of such utilities.

282 Using just a browser, users have access to results as web reports in

283 antigen structure (if supplied) from the web browser using a JSmol applet.

284 ults as overlays on the raw data via any web browser using a personal computer or mobile device.

285 We have developed new genome and annotation browsers using JBrowse and WebApollo for two Bos taurus

286 ference Consortium Human Reference 37 genome browser, using predefined criteria guided by known trans

287 The browser view facilitates examining the evidence for or a

288 leles are then displayed in a scrollable web browser view, enabling a more intuitive visualization of

289 ase of Genotypes and Phenotypes (dbGaP) Data Browser was developed in response to requests from the s

290 ally, the sandboxed execution of code by web browsers was also found to enable them, as compute nodes

291 Two new tools on the UCSC Genome Browser web site provide improved ways of combining info

292 urativa using Baidu, Bing, Google, and Qwant browsers were performed.

293 major operating systems, and the UCSC Genome Browser, which is open source and free for non-commercia

294 methylC track is part of the WashU EpiGenome Browser, which is open source and freely available at ht

295 icing factor and RNA binding proteins in the browser window for comparison with m(6)A sites and for e

296 hat we support to 77 and expanded our genome browser with a new scrollable overview and improved vari

297 The new release includes a new Genome Browser with RNAseq expression, interspecies Basic Local

298 have also developed an NGS resequencing data browser within SoyKB to provide easy access to SNP and d

299 r of a graphics-processing unit (GPU) from a browser without any third-party plugin.

300 lexible wheat (Triticum aestivum) expression browser (www.wheat-expression.com) that can be expanded