ライフサイエンスコーパス: burrow

1 say), and behavioral biomarkers (feeding and burrowing).

2 number of individuals that shared a sleeping burrow.

3 in 'larders' near the sleeping quarters in a burrow.

4 serves as a wedge to extend the crack-shaped burrow.

5 itting these species to either run faster or burrow.

6 als need to remember the locations of escape burrows.

7 live in restricted regions, e.g., near their burrows.

8 concomitant decline in the density of animal burrows.

9 areas and narrow tunnels, resembling natural burrows.

10 abs (Carcinusmaenas) into intertidal Sesarma burrows.

11 pecies-typical behaviors such as digging and burrowing.

12 ood aversion, hypermobility, and cooperative burrowing.

13 reas P. maniculatus dig short, single-tunnel burrows [2-4]-were intact in juvenile burrowers.

14 These results show that the burrowing ability of a detritivore can determine whether

15 or-detritivore-plant interaction chains, the burrowing ability of plant-facilitating detritivores det

16 End points measured were: survival, burrowing activity, histopathological lesions, and metal

17 r close association with abundant bilaterian burrows also indicates that they could tolerate and may

18 were trained to locate a single open escape burrow among 6 possible locations.

19 reis virens in making and moving into such a burrow amounts to less than one-tenth of the force it ne

20 and high bioturbation (bivalve and actively burrowing amphipod, Victoriopisa australiensis).

21 reviously, parameters such as the latency to burrow and the complexity of the burrow systems in subst

22 ffect behavioral drive (i.e., motivation) to burrow and thereby affect both the developmental timing

23 n backcross hybrids, we show that precocious burrowing and adult tunnel length are genetically correl

24 The burrowing and feeding activities of benthic organisms ca

25 active behaviors such as grooming, rearing, burrowing and locomotion increased.

26 Crayfish burrows and molluscan body fossils, abundant below and a

27 ociated with the occurrence of benthic fauna burrows and seagrass roots.

28 e allows the female priority access to their burrow, and in doing so dramatically increases his proba

29 learned in this respect from nature: Diving, burrowing, and hibernating animals living in diverse env

30 due in part to lateral reworking, diffusion, burrowing, and perhaps Milankovitch cyclicity.

31 itable size modification probably almost any burrowing animal could be tested in it.

32 oil thereby putting it out of reach of most burrowing animals.

33 Larger and more elaborate fossil burrows appear near 543 million years ago, the beginning

34 Moreover, the well-known differences in burrow architecture between adults of these species-P. p

35 This burrow architecture is in contrast with the small, simpl

36 The burrows are formed by the foot of each bivalve, which ca

37 i, which is known to lay its egg clutches in burrows at volcanically heated nesting grounds.

38 Fostering did not alter the characteristic burrowing behavior of either species, suggesting that th

39 otus is strikingly precocious with regard to burrowing behavior, but not other behaviors, compared to

40 Virtually all rodents display burrowing behavior, yet measurement of this behavior has

41 l based on simple assumptions about organism burrowing behavior.

42 developmental timing and adult expression of burrowing behavior.

43 and suppressed hypermobility and cooperative burrowing behaviors.

44 ted in such natural sounds, with startle and burrowing behaviors.

45 ons, both species recapitulate their natural burrowing behaviour.

46 helium may be of particular importance for a burrowing, benthic scavenger, such as hagfish, which are

47 amundi, abalone (three species), blue sprat, burrowing blackfish, gummy shark, oyster (four species),

48 In burrows built by first-generation backcross mice, entran

49 in northeastern Siberia from fossil squirrel burrows buried at a depth of 38 m in undisturbed and nev

50 We separated the effects of burrow creation from kangaroo rat density and found that

51 Most remembered the location of the open burrow, demonstrating learning in 1 day.

52 ne of New England salt marshes, Carcinus are burrow dependent, Carcinus reduce Sesarma functional den

53 h is consistent across populations, although burrow depth varies with soil composition.

54 reversed where above-ground predators drive burrowing detritivores to lower soil levels, strengtheni

55 ive indirect effects to plants, whereas (ii) burrowing detritivores will escape predation by retreati

56 of above-ground predacious beetles: (i) non-burrowing detritivores will suffer mortality due to pred

57 patches (wet soil), we hypothesized that (i) burrowing detritivores would undergo a vertical habitat

58 oxy for body size, significant reductions in burrow diameter suggest that their tracemakers were smal

59 Burrow diameters of the most abundant ichnofossils are 3

60 spected, including adaptations for swimming, burrowing, digging and even gliding, but such well-prese

61 strategies to locate spider eggs: Larvae may burrow directly through the silk of egg sacs they find,

62 We assessed the utility of larval burrowing dragonflies (Odonata: Anisoptera: Gomphidae) a

63 th observations that squirrels entered their burrows during the day to 'offload' heat.

64 tudied gene expression in a hypoxia-tolerant burrow-dwelling goby fish, Gillichthys mirabilis.

65 Squirrels also emerged from their burrows earlier and returned to them later over the meas

66 e how close a potential intruder is from its burrow entrance, even when the entrance in the sand is i

67 Specifically, we consider burrowing events to be stochastic but memoryless, leadin

68 -time mixing resulting from infrequent, deep burrowing events.

69 tion and progressive specialization toward a burrowing existence.

70 nt ecological groups of earthworms and their burrowing, feeding and casting activities under various

71 the locomotion traits of prey species (e.g. burrowing/flying ability) may help explain their behavio

72 spersal limited and rely on their silk lined burrow for protection.

73 esized that Carcinus is dependent on Sesarma burrows for refuge from physical and biotic stress in th

74 cial cohesion, tolerance, and cooperation in burrowing, foraging, defense, and alloparental care for

75 We used the observed burrow formation statistics and organism density to para

76 t uses time-lapse imagery to directly relate burrow formation to resulting sediment mixing.

77 We paired white-light imaging of burrow formation with fluorescence imaging of tracer par

78 The length and number of burrows formed by chemosymbiotic thyasirids are related

79 e in bioturbation with the expansion of deep burrowing forms into offshore environments; and (iv) off

80 n the egg jelly coat from the South American burrowing frog, Lepidobatrachus laevis.

81 - and use high-resolution reconstructions of burrow geometry to determine the extent and nature of bi

82 d-and provide guidance on-the application of burrowing gomphids as biosentinels of MeHg contamination

83 The mean concentration of MeHg in burrowing gomphids was positively correlated with mean M

84 Ten species of burrowing gomphids were sampled; 13 lakes contained 3 or

85 earthworms that typically live in the soil, burrowing horizontally to acquire nutrients) earthworm P

86 Many mammals forage and burrow in dark constrained spaces.

87 msters, gerbils and Egyptian spiny mice also burrow in this apparatus, and with suitable size modific

88 is also associated with precocious onset of burrowing in juveniles, suggesting that the same genetic

89 ple protocol that can quantitatively measure burrowing in laboratory rodents, using a simple apparatu

90 ptations to a wide range of lifestyles, from burrowing in moles to flying in bats.

91 bivalve family Teredinidae (shipworms) that burrows in marine sediments rather than wood.

92 eason being that some members occupy shallow burrows in sediments and are maximally exposed to the co

93 d their feet to form elongated and ramifying burrows in the sediment, most probably to gain access to

94 ortugal, (iii) breeding birds attending nest burrows in the UK, captured by hand, and (iv) adults cap

95 Insect and oligochaete burrows increase in abundance during the PETM, suggestin

96 Morph1 (JN626268) was observed to burrow into and underneath the coral tissues at the lesi

97 s that can disperse over large distances and burrow into the ground.

98 been kept for several weeks, after they had burrowed into the agar.

99 Our experiments show that by burrowing into the sediment, Chaoborus spp. utilize the

100 The nematode worm burrows into insect prey and regurgitates Photorhabdus,

101 background levels and that the community of burrowing invertebrates has largely recovered.

102 use the ability of detritivores to form deep burrows is likely to be limited by oxygen availability i

103 h long entrance and escape tunnels, and that burrow length is consistent across populations, although

104 ale kin ground squirrels maintain close nest burrows, likely providing a social buffer against territ

105 habits, suggesting that snakes evolved from burrowing lizards.

106 raging excursions, fiddler crabs track their burrow location despite having no visual contact with it

107 rena; after a 24-hr delay, their memory of a burrow location was tested.

108 he simplicity, sensitivity and robustness of burrowing make it ideal for assessing genetically modifi

109 ions reduces thermoregulatory costs in small burrowing mammals like mice.

110 In order to survive, small burrowing mammals need to remember the locations of esca

111 Until now, the analysis of burrowing mechanics has neglected the mechanical propert

112 netic orientation to simplify their vertical burrowing migration by reducing the orientation task fro

113 o the earth's magnetic field during vertical burrowing migrations.

114 Burrowing nematodes (Radopholus similis) cause severe ha

115 face-dwelling Nassarius nitidus and the deep-burrowing Nereis spp., decreased with increased cap thic

116 analyses, whereas hibernation, heterothermy, burrowing, nesting, and study location did not influence

117 ecture is in contrast with the small, simple burrows of its sister species, deer mice (P. maniculatus

118 ween the two species reveal that the derived burrows of oldfield mice are dominant and evolved throug

119 are biological and can be interpreted as the burrows of wormlike undermat miners (that is, infaunal a

120 lying that oxygen levels were sufficient for burrowing organisms to live.

121 Worms burrowed over a range of times and depths, resulting in

122 increasing air temperature and aridity on a Burrowing Owl (Athene cunicularia) population in the sou

123 The remarkable similarity between the burrowing owl's defensive hiss and the rattlesnake's rat

124 e widespread collection of mammalian dung by burrowing owls (Athene cunicularia) and show that they u

125 danger posed by the rattling snake, and (b) burrowing owls (Athene cunicularia) defend themselves ag

126 le is directly linked to foraging for small, burrowed prey (monitor lizards), which is a specialty of

127 ptation, suggesting that snakes evolved from burrowing rather than marine ancestors.

128 nd spent less time in the safe vicinity of a burrow refuge, thus suffering a potentially increased pr

129 topuses learned the original location of the burrow, remembering it for a week.

130 --in which an alternating 'anchor' system of burrowing serves as a wedge to extend the crack-shaped b

131 rable to that of the abundant birds, fishes, burrowing shrimps and polychaetes.

132 As burrow size is a proxy for body size, significant reduct

133 us beetle (i) reduced the density of the non-burrowing species and indirectly reduced dung loss rate,

134 ations and plant biomass, but (ii) drove the burrowing species deeper, indirectly improved soil condi

135 nments of different light intensities (i.e., burrows, streams, standing waters, and subterranean wate

136 These burrows suggest that triploblastic animals existed more

137 mined the brains of rats housed in a visible burrow system (VBS), a seminaturalistic environment with

138 among the animals that had no access to the burrow system after the dominance hierarchy stabilized,

139 In two separate visible burrow system experiments, the nonresponsive subordinate

140 In the visible burrow system model of chronic social stress, male rats

141 latency to burrow and the complexity of the burrow systems in substrate-filled boxes in the laborato

142 llen tube must breach the stigma surface and burrow through the extracellular matrix of the stigma ep

143 uggest that the N-terminal domain of the OCP burrows tightly into the PBS while leaving the OCP C-ter

144 urban run-off exhibited significantly longer burrowing times, >30% weight loss, and >2-fold increase

145 of age, whereas P. maniculatus did not build burrows until 10 days later.

146 , affect invertebrate particle reworking and burrow ventilation behaviour - important moderators of m

147 y of marine bivalve genera by life position (burrowing versus exposed), body size, bathymetric positi

148 but memoryless, leading to exponential inter-burrow waiting times and depths.

149 In P. polionotus, burrows were excavated as early as 17 days of age, where

150 NINJA takes advantage of the Burrows-Wheeler (BW) alignment using an artificial refer

151 In the pipeline, Burrows-Wheeler Aligner and Assembly Based ReAlignment a

152 present PALADIN-a novel modification of the Burrows-Wheeler Aligner that provides accurate alignment

153 We designed and implemented a new algorithm, Burrows-Wheeler Aligner's Smith-Waterman Alignment (BWA-

154 ed for each atrial-lymphocyte pair using the Burrows-Wheeler Aligner, the Genome Analysis Toolkit, an

155 Wheeler Transform - Smith-Waterman (BWT-SW), Burrows-Wheeler Alignerr - Smith-Waterman (BWA-SW)) base

156 We implemented Burrows-Wheeler Alignment tool (BWA), a new read alignme

157 In recent years, the Burrows-Wheeler transform (BWT) and FM-index have been w

158 system uses an indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzin

159 r error model for the raw intensity data and Burrows-Wheeler transform (BWT) based alignment are comb

160 It uses a Burrows-Wheeler Transform (BWT) index of the sequencing

161 The Burrows-Wheeler transform (BWT) is the foundation of man

162 ackage that is based on backward search with Burrows-Wheeler Transform (BWT), to efficiently align sh

163 st stage is split reads mapping based on the Burrows-Wheeler transform (BWT), which finds candidate d

164 compressed via a multi-string variant of the Burrows-Wheeler Transform (BWT), which provides the side

165 ays is given, which is termed the positional Burrows-Wheeler transform (PBWT).

166 andful of hash table (BLAT, SSAHA2) or trie (Burrows-Wheeler Transform - Smith-Waterman (BWT-SW), Bur

167 of mismatches than current programs based on Burrows-Wheeler transform and finds about the same numbe

168 HISAT uses an indexing scheme based on the Burrows-Wheeler transform and the Ferragina-Manzini (FM)

169 rs, methods based on suffix arrays using the Burrows-Wheeler Transform have been widely used for DNA

170 Burrows-Wheeler transform is used in multiple steps of t

171 We create a Burrows-Wheeler transform of the genome, which together

172 esign a new alignment algorithm based on the Burrows-Wheeler transform that maps short reads from a n

173 na-Manzini index (FM-index) derived from the Burrows-Wheeler transform to find overlaps of length at

174 efficient string data structures such as the Burrows-Wheeler transform with cryptographic techniques

175 q) to a reference genome using the FM-index (Burrows-Wheeler transform).

176 ing the FM-index derived from the compressed Burrows-Wheeler transform, and a new assembler based on

177 e collections and employing the (positional) Burrows-Wheeler transform.

178 a new data structure based on the positional Burrows-Wheeler transform.

179 (Spermophilus columbianus) to locate escape burrows when local (e.g., vegetation pattern, local reli

180 r polarization information to avoid occupied burrows when seeking a refuge.

181 ed for tactile exploration in the dark tight burrows where many rodents live.

182 e species-P. polionotus adults excavate long burrows with an escape tunnel, whereas P. maniculatus di

183 d mice (Peromyscus polionotus) build complex burrows with long entrance and escape tunnels, and that

184 major food sources is larvae extracted from burrows with sticks held diagonally in the bill, oriente

185 s resides in intimate contact with its host, burrowing within cecal epithelial cells.