ライフサイエンスコーパス: catalog

1 Genome-Wide Association Studies (NHGRI GWAS Catalog).

2 sources in indexed JSON-encoded flat files (catalogs).

3 tens of thousands of functions in the human catalog.

4 criptional alterations are more difficult to catalog.

5 n the genome-wide association studies (GWAS) catalog.

6 the application of INRICH on the NHGRI GWAS catalog.

7 entally obtained, single-base resolution CGI catalog.

8 ized as sunscreens in the Amazon.com, online catalog.

9 d larger than cohorts used for previous gene catalogs.

10 of studies and results than comparable GWAS catalogs.

11 considerably higher quality than in previous catalogs.

12 A that only recently has been identified and cataloged.

13 ts substrate, Gag, have not been extensively cataloged.

14 and doubled the total number of transcripts cataloged.

15 es in which PS ASOs are active, or inactive, cataloged.

16 We also cataloged 144 unique phosphopeptides on known OCT4 inter

17 g 2 (Msh2) by mutagenizing, identifying, and cataloging 26 deleterious mutations in 23 amino acids.

18 We cataloged 28 Nephila spidroins, representing all known o

19 We cataloged 809 polymorphic Alu elements mapping to 1,159

20 a cell lines and two non-myeloma cell lines, cataloging a total of 57 potent multiple myeloma surviva

21 etabolomic speciation, and loadings analysis catalogs a marked change in metabolic phenotype.

22 mutant primary macrophages to systematically catalog all of the genes bound by (cistromes) and transc

23 p://www.ncbi.nlm.nih.gov/genome/viruses/ and catalogs all publicly available virus genome sequences a

24 ition to the SNP-trait association data, the Catalog also publishes a quarterly diagram of all SNP-tr

25 ng novel ways for users to interact with the Catalog and changes to the curation infrastructure.

26 formation Center for Protein Sequence (MIPS) catalog and complexes derived from the Saccharomyces Gen

27 This viral catalog and functional analyses provide a necessary foun

28 (GOLD) is a comprehensive online resource to catalog and monitor genetic studies worldwide.

29 This study further expands the catalog and properties of organic salts for inexpensive,

30 tablish a comprehensive antibiotic resistome catalog and to obtain co-occurrence patterns between ARG

31 t the computational level by comprehensively cataloging and characterizing its cellular building bloc

32 e samples reduces the material available for cataloging and introduces a bias toward the earlier stag

33 Course catalogs and archival sources show that lectures on ethi

34 n genome-wide significant SNPs from the GWAS catalog, and are also more likely to be tissue specific

35 ession data, Genome-Wide Association Studies catalog, and text-mined knowledge, to discover disease-d

36 cribes how to use the viral protein families catalog ( approximately 7 h) and recommended filters for

37 Some features of the global catalog are improbable in retrospect, but so are some fe

38 and instructions for creating user-specific catalogs are provided.

39 Complementing the genomic data catalogs are those associated with phenotypes and diseas

40 4), and reclassified 69% of genetic variants cataloged as disease causing in mutation databases to va

41 This variation is rapidly being cataloged at the sequence level, but careful dissection

42 We report that deep sequencing can catalog bacterial species in mixed specimens from which

43 of 3D structures translated into 3D graphs, cataloged based on the connectivity between their second

44 offers several new functions including read cataloging based on genome annotation, optional seed reg

45 We catalog binding of TFs at coding genes and microRNA prom

46 c information on tumors from 50 cancer types cataloged by the International Cancer Genome Consortium

47 The Catalog can be accessed via a tabular web interface, via

48 This catalog can function as a critical addition to the pre-e

49 We systematically catalog cancer genes and show that genes vary extensivel

50 To catalog cell types in an unbiased way, we profiled gene

51 ls have provided the tantalizing prospect of cataloging cell type diversity and developmental dynamic

52 ents, making it suitable for discovering and cataloging chromosomal translocations associated with sp

53 Med, Web of Science, Embase and the NIH GWAS catalog complemented by data extraction from pre-existin

54 The catalog contains 93% of a Lingulodinium EST dataset depo

55 This catalog contains more genome-wide significant eQTLs per

56 ng PennCNV, an algorithm for identifying and cataloging copy numbers for individuals based on a hidde

57 The range of available Catalog data has also been extended with structured ance

58 be used to predict earthquakes starting from catalog data.

59 Protein cluster cataloging defined pelagic upper-ocean viral community p

60 HippDB catalogs every protein-protein interaction whose structu

61 Initial optimization by catalog followed by iterative parallel synthesis guided

62 tablished transcriptomes provide a reference catalog for further detailed studies on human spermatoge

63 es and alleles and serves as a comprehensive catalog for mouse models of human disease.

64 and validated a prototypic reverse diagnosis catalog for the MMR gene MutS Homolog 2 (Msh2) by mutage

65 ovide an online conditional cis eQTL mapping catalog for whole blood, which can be used to lookup eQT

66 Existing catalogs for the human gut microbiome are based on sampl

67 ta Release 24 (Q1-Q17 DR24) planet candidate catalog from NASA's Kepler mission, specifically compari

68 Several catalogs from commonly used annotation sources and instr

69 the number of genome-wide significant loci, catalog functional insights, and enhance our understandi

70 In eQTL catalogs, gene expression is often strongly associated w

71 lar to the human gut microbiome, >99% of the cataloged genes are bacterial.

72 Cataloging genes expressed in Acropora palmata, a founda

73 collaborative studies around the globe have cataloged genomic and epigenomic alterations in gliomas

74 ntrast, whole-genome sequencing reproducibly cataloged genomic variants (131,424 different single nuc

75 The catalog has a high reliability rate (85-90% averaged ove

76 The NHGRI-EBI GWAS Catalog has provided data from published genome-wide ass

77 le eQTL (expression quantitative trait loci) catalogs have become available that can help understand

78 3 probands (69.6%) presented with previously cataloged human genetic disorders and/or defined CNV hot

79 From this we established the integrated gene catalog (IGC) comprising 9,879,896 genes.

80 The resulting catalog illustrates the diversity of sensory types and t

81 Here, we analyze the Japan seismic catalog in natural time from January 1, 1984 to March 11

82 Much work remains to complete the mutational catalog in primary tumors and across the natural history

83 s and term relations that were initially not cataloged in GO, a number of which have now been added b

84 Expression of an oncogenic mutant of GIV (cataloged in TCGA) that cannot be phosphorylated by AMPK

85 5) to the enzyme reannotation of 396 genomes cataloged in the ENSEMBL database.

86 lysis, and the final autopsy report were all cataloged in the Johns Hopkins Post-mortem CIED Registry

87 When applied to the IGC gene catalogs in human gut microbiome ( approximately 10M gen

88 The Catalog includes 1751 curated publications of 11 912 SNP

89 This catalog includes all previously identified glomerular co

90 The catalog includes close-to-complete sets of genes for mos

91 data from the literature and our joint study catalog includes data from over 100 studies in 11 organi

92 sents a number of recent improvements to the Catalog, including novel ways for users to interact with

93 ntestinal microbiota has begun to shift from cataloging individual members of the commensal community

94 decomposition of a cancer genome's mutation catalog into mutations consistent with such signatures c

95 The genome feature catalog is generated by the integration of computational

96 quently, the completeness of a species' gene catalog is measured using a set of marker genes that are

97 A large part of functional genomics' public catalogs is based on ChIP-seq data.

98 STITCH and STRING are sister databases that catalog known and predicted drug-protein interactions an

99 nted by functional information from the GWAS Catalog, libraries of transcription factor binding sites

100 The results provide the first genome-wide catalog linking gene promoters to their long-range inter

101 Distinct differences in the cellular protein catalog may reflect the dynamic role and high energy req

102 f 99 individuals from present-day Lebanon to catalog modern Levantine genetic diversity.

103 Transcriptomic analysis of these neurons now catalogs molecules involved in signaling and ectosome bi

104 e we exploited this property to sequence and catalog more than 10 million mutations in the protein-co

105 p to 13 vertices (~260 nucleotides), thereby cataloging more than 10 times as many secondary structur

106 oth within the groups comprising the ~11,200 cataloged morphospecies of eukaryotic plankton and among

107 The field of metabolomics continues to catalog new compounds, but their functional analysis rem

108 diction supported by RNA-seq data produced a catalog of 1703 predicted microRNAs, 18,882 long noncodi

109 ng Project and compared this data set with a catalog of 197 previously published rare variants report

110 With a comprehensive catalog of 3,915 mammalian EGs, we provide compelling ev

111 mation to create a phased "Platinum" variant catalog of 4.7 million single-nucleotide variants (SNVs)

112 n this study, we present the first reference catalog of 682 high-confidence lncRNAs based on analysis

113 ic effort to produce a comprehensive genomic catalog of all cultured Bacteria and Archaea by sequenci

114 ads to both the human reference genome and a catalog of all possible splicing events developed from t

115 the inclusion of microRNA knockouts to MGD's catalog of alleles and phenotypes, the addition of video

116 In addition, we provide a genome-wide catalog of allelic expression imbalance, which is also e

117 We generated a genomic catalog of almost 200 LASV sequences from clinical and r

118 the National Human Genome Research Institute catalog of associations to generate instrumental variabl

119 vides links to pathway information, the ZINC catalog of available compounds, and other resources.

120 oupled to the virtually unlimited commercial catalog of available starting materials bodes well for i

121 e sets to produce an automatically generated catalog of biological processes.

122 between protein domains, presents a complete catalog of both structurally resolved and predicted inte

123 way suggests that we are far from a complete catalog of cancer drivers.

124 Finally, we provide OncoNAT, a catalog of cancer-related genes with significant antisen

125 We created the largest existing catalog of canine genome-wide variation and compared it

126 It not only extends the most up to date catalog of circRNAs but also provides a thorough express

127 These data provide a catalog of copy-number associated gene dependencies and

128 complete genome assembly and creating a full catalog of correctly predicted genes.

129 The catalog of dCIN genes presented here provides a candidat

130 Its legacy will be a catalog of discoveries sufficient for computing planet o

131 s required for moving toward a more complete catalog of disease-related genes and variants.

132 This study also provides a catalog of diverse exRNAs useful for biomarker discovery

133 l hydrolase, expanding an already impressive catalog of enzymes involved in polysaccharide metabolism

134 Our study provides an annotated catalog of erythroid lncRNAs, readily available through

135 ranscriptome resource and produced the first catalog of expression quantitative trait loci (eQTLs) in

136 ific collaboration to create a comprehensive catalog of functional elements in the human genome, and

137 its third phase of creating a comprehensive catalog of functional elements in the human genome.

138 These results provide a comprehensive catalog of functional non-coding regulatory variants tha

139 This study provides a catalog of gene expression changes in human pancreatic i

140 rtium is creating a genome- and phenome-wide catalog of gene function by characterizing new knockout-

141 MGD maintains a unified catalog of genes and genome features, including function

142 Here we present a comprehensive catalog of genes important for meiosis in the fission ye

143 This catalog of genes reveals human orthologs known to be rec

144 es of initiation and provide a comprehensive catalog of genes targeted for silencing by this methyltr

145 (+) cells and true beta cells and provides a catalog of genes whose manipulation may convert hPSC-INS

146 for genes from PHI-base, an expertly curated catalog of genes with experimentally verified pathogenic

147 MGD maintains a comprehensive catalog of genes, functional RNAs and other genome featu

148 biology in the context of knowing the entire catalog of genetic alterations.

149 We present a catalog of genetic variants regulating gene expression (

150 investigations by providing a comprehensive catalog of genetic variation.

151 Construction of a near-complete catalog of HERV-T fossils in primate genomes allowed us

152 e data requires a comprehensive, genome-wide catalog of high-confidence variants called in a set of g

153 To extend the catalog of human core and context-dependent fitness gene

154 ociation Predictions) database, an extensive catalog of human genetic associations mapped to effector

155 A comprehensive catalog of human immune phenotypes could provide a funct

156 In order to construct an up-to-date catalog of human snoRNAs we have combined data from vari

157 Although the catalog of known AS events has grown ever since, novel t

158 sequencing efforts have vastly expanded the catalog of long non-coding RNAs (lncRNAs) with varying e

159 While the catalog of mammalian transcripts and their expression le

160 This provided an extensive catalog of metabolites and their spatiotemporal cobehavi

161 As a result of the expanding catalog of metagenomic viral sequences, there exists a n

162 ing data from 461 samples into a coordinated catalog of microRNA expression.

163 oject and 1000 Genomes Project resulted in a catalog of millions of single nucleotides and insertion/

164 In conclusion, this work provides a novel catalog of mouse ESCs-expressed lincRNAs with the relati

165 This study enhances the catalog of multiple sclerosis risk variants and illustra

166 Genome science has achieved a catalog of mutations and informative SNPs.

167 We generated an extensive catalog of nascent and steady-state transcripts in Arabi

168 Overall, our catalog of neuronal subclasses provides new understandin

169 Furthermore, using this catalog of newly discovered lncRNAs, we show that PAX5,

170 ined with in situ hybridization to develop a catalog of nox1, nox2/cybb, nox5, and duox expression in

171 des, collective studies have unveiled a full catalog of nucleoporins (Nups) that comprise the NPC, st

172 a range of different organisms, to provide a catalog of nucleosome positioning signals in promoters a

173 Our study provides the first comprehensive catalog of parent-of-origin expression status for X-link

174 hies, it is of high importance to generate a catalog of primary cilia proteins.

175 Chip and qPCR, this workflow offers a robust catalog of protein-DNA binding events with improved spat

176 The database of 3D interacting domains is a catalog of protein-protein interactions for which a high

177 tabase of 3D interacting domains (3did) is a catalog of protein-protein interactions for which a high

178 onal Human Genome Research Institute (NHGRI) Catalog of Published Genome-Wide Association Studies (GW

179 the National Human Genome Research Institute Catalog of Published Genome-Wide Association Studies (NH

180 e National Human Genome Research Institute's Catalog of Published Genome-Wide Association Studies ide

181 automated mathematical analysis to derive a catalog of realistic Turing networks.

182 yses of the human gut microbiome depend on a catalog of reference genes.

183 Achieving a comprehensive catalog of retinal cell types now appears within reach,

184 These data expand the catalog of Rkr1 substrates and highlight a previously un

185 controlled by an expanding, yet incomplete, catalog of RNA-binding proteins (RBPs), many of which la

186 aft sequence makes available a comprehensive catalog of sequence differences between the CB4856 and N

187 This article introduces a catalog of several hundred free video courses of potenti

188 ural network analyses approach to identify a catalog of small molecules dependent on the colibactin p

189 We provide a catalog of SNPs that show high levels of differentiation

190 from short reads, we report a comprehensive catalog of somatic structural variations and the mechani

191 of chromatin states, we uncover an extensive catalog of SOX10 targets genome-wide.

192 sing new genomic technologies, has started a catalog of specific microbiome composition and its corre

193 discovery of a large but previously unknown catalog of splicing variations in human populations.

194 We produce a catalog of super-enhancers in a broad range of human cel

195 We outline the extensive catalog of superlattices prepared to date using hydrocar

196 Using the high-resolution earthquake catalog of Taiwan between Jan 1994 and Feb 2009, we illu

197 could diagnose CMV status from the resulting catalog of TCRbeta sequences with high specificity and s

198 Using the catalog of The Cancer Genome Atlas (TCGA), we developed

199 ovo database, which provides a comprehensive catalog of the DNMs identified in neuropsychiatric disor

200 To define a complete catalog of the genes that are activated during mouse scl

201 In this mini-review we present a catalog of the molecular machines and an inventory of th

202 is custom chip provides a more comprehensive catalog of the most promising candidate variants by pick

203 We established a catalog of the mouse gut metagenome comprising approxima

204 types are highly concordant with the current catalog of the National Institute of Standards and Techn

205 cant gains rely on obtaining a comprehensive catalog of the neurons and associated GAL4 lines that ar

206 ification of loci into chromatin types and a catalog of the positions of chromatin loops.

207 We report the compilation of a large catalog of transcription factor-binding sites across Bac

208 mbl gene annotation provides a comprehensive catalog of transcripts aligned to the reference sequence

209 Using this large catalog of transposed genes, we detected accelerated seq

210 Collectively, we expand the catalog of ubiquitylation targets in Arabidopsis and sho

211 Assigning functional roles to the catalog of uncharacterized phosphorylation sites is a ke

212 In this study, we report a catalog of variants detected by a whole exome sequencing

213 The density of this catalog of variation allowed us to construct high-resolu

214 More than just a catalog of worldwide genome projects, GOLD is a manually

215 ll types and organisms should accelerate the cataloging of enhancers and understanding how transcript

216 cing of the human genome, and its associated cataloging of human genetic variation and technological

217 ulture in the laboratory, which can confound cataloging of members and understanding of how communiti

218 ng these molecular defects allows an initial cataloging of molecular pathways that lead to hereditary

219 A challenge to comprehensive cataloging of mosaic mutations and their consequences is

220 iations with variation in the connectome and cataloging of neurophenotypes promise to transform our u

221 ge-scale mutagenization, identification, and cataloging of residues of MMR genes critical for MMR gen

222 We describe recent progress in the cataloging of somatic genetic and genomic alterations, a

223 Recent genome-wide studies in the cataloging of somatic mutations in cancer have identifie

224 racterization of copepod transcripts and the cataloging of the complete set of 79 eukaryotic cytoplas

225 A careful cataloging of the genomic alterations and their response

226 onucleotide microsatellites, allowing a full cataloging of the true targets of MSI in colorectal canc

227 The cataloging of the vascular plants of the Americas has a

228 applications, not the least of which is the cataloging of variant splice isoforms of protein-coding

229 Despite continual progress in the cataloging of vertebrate regulatory elements, little is

230 arge-scale studies have created genome-scale catalogs of DNase I hypersensitive sites (DHSs), which d

231 Our results demonstrate that comprehensive catalogs of GxE interactions are indispensable to thorou

232 d indicate the need to develop more complete catalogs of HOCs from various marine environments.

233 frenetic pace, resulting in massively large catalogs of human genomic variation.

234 We have generated catalogs of lncRNA species expressed in human and murine

235 generation of high-resolution, comprehensive catalogs of somatic alterations in cancer genomes.

236 las (TCGA), which is now routinely compiling catalogs of somatic mutations from hundreds of paired tu

237 Accurate catalogs of structural variants (SVs) in mammalian genom

238 ch combines multiple reference sequences and catalogs of variation.

239 read barcode provides a convenient method to catalog polyol analytes.

240 , available at http://nonb.abcc.ncifcrf.gov, catalogs predicted non-B DNA-forming sequence motifs, in

241 acids can be removed from either end of the cataloged protein structure before converting it from a

242 The knotting complexity of the cataloged proteins is presented in the form of a matrix

243 The new CGI catalog provides a comprehensive and integrated list of

244 ished Genome-Wide Association Studies (GWAS) Catalog provides a publicly available manually curated c

245 The resulting catalog provides a tractable list for experimental follo

246 This catalog provides a useful reference for future studies.

247 We previously cataloged putative autocrine/paracrine signaling loops i

248 ry properties for pre-B cells, and provide a catalog reference for the epigenetic changes that occur

249 These catalogs rely on peak calling algorithms that infer prot

250 d in vitro analysis of mutants listed in the catalog revealed both recessive and dominant-negative ph

251 rom Chinese and Danish individuals using the catalog revealed country-specific gut microbial signatur

252 matter." Here, we introduce an algorithm to catalog RiPP biosynthetic gene clusters and chart geneti

253 RAG was first reported in 2004 for cataloging RNA secondary structure motifs using graph re

254 optimized these ligands through an analog-by-catalog search that yielded compound 4, which binds to P

255 manually curated data management system that catalogs sequencing projects with associated metadata fr

256 This expanded catalog should facilitate quantitative characterization

257 The number of GWAS catalog SNPs identified as eQTL in the conditional analy

258 scale genomic analyses of human cancers have cataloged somatic point mutations thought to initiate tu

259 mputational discovery and classification, we catalog SR proteins in 20 model organisms, with a focus

260 GAC cis-elements in the upstream sequence to catalog StBEL5 target genes.

261 fining and enhancing the existing annotation catalogs, such as the Gene Ontology (GO) database.

262 nd indels (99.92%) and add a validated truth catalog that has 26% more SNVs and 45% more indels.

263 ctices from metagenomics research to rapidly catalog the bacterial composition of clinical specimens

264 SB mutagenesis has thus helped to catalog the cooperative molecular mechanisms driving BRA

265 The objective of this review is to catalog the differences observed in the nomenclature use

266 To catalog the diversity and abundance of halogenated organ

267 While major efforts continue to catalog the genomic events associated with human cancer,

268 lopment of large-scale sequencing efforts to catalog the human microbiome.

269 Metabolomic approaches have begun to catalog the metabolic disturbances that accompany CKD, b

270 trometry (MS) or RNA-sequencing (RNA-seq) to catalog the proteins and RNA associated with sites of ac

271 The creation of structured resources that catalog the relationships between drugs and genes would

272 There has been an intensive effort to catalog the species and genetic content of this microbia

273 We cataloged the cis elements in embryonic stem cells and f

274 In this study, we have cataloged the isomerization reactions known to occur in

275 In the database, we cataloged the various names, orthologs and gene identifi

276 development and provide a community resource cataloging the abundance and phosphorylation status of t

277 focus on emerging themes from recent studies cataloging the diversity of ERV LTRs acting as important

278 ODE Project have made tremendous progress in cataloging the genomic binding patterns of DNA-associate

279 The first half of this review catalogs the identification and diversity of DNA modific

280 ologs that are difficult to detect, and thus catalogs the largest number of evolutionary links among

281 In summary, this high-throughput technique catalogs the potential phosphorylation substrates of mul

282 ic Site Atlas (CSA) published in 2004, which catalogs the residues involved in enzyme catalysis in ex

283 decades, but there have been few attempts to catalog their scope or effectiveness.

284 sted as critical in such a reverse diagnosis catalog, there is a high probability that the correspond

285 Therefore, it is important to identify and catalog these events.

286 Here, we catalog this heterogeneity and use it to identify functi

287 , exome and sequencing studies, allowing the Catalog to adapt to the needs of evolving study design,

288 ng and de novo assembly of an expressed gene catalog (transcriptome) from the giant horsetail (Equise

289 A recent study cataloging variation in continental African populations

290 o combine and retrieve annotation from these catalogs via the command-line interface.

291 sing the multicolor flip-out technique and a catalog was created of the neurons, their morphologies,

292 te the value of such a more complete variant catalog, we conducted a GWAS meta-analysis of kidney fun

293 (NHGRI) genome-wide association study (GWAS) catalog, we determined that 528 unique sQTLs were signif

294 With a high-resolution earthquake catalog, we observe propagating foreshocks leading to th

295 eported in the Genome-Wide Association Study Catalog were annotated, 78% as mQTL and 31% as eQTL in L

296 such trait-associated SNPs have already been cataloged, which we believe form a great resource for ge

297 This catalog will serve as a foundation for the development o

298 t even with large sample sizes, rare variant catalogs will be largely incomplete.

299 o generate an ocean microbial reference gene catalog with >40 million nonredundant, mostly novel sequ

300 Combining our enhancer catalog with gene expression profiles and open chromatin