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   1 dditional factors required for expression of chloroplast genes.                                      
     2 RNPs in the signal-dependent coregulation of chloroplast genes.                                      
     3 tanding of the transcriptional regulation of chloroplast genes.                                      
     4 ot explain the transcriptional regulation of chloroplast genes.                                      
     5 y examines the codon usage of low-expression chloroplast genes.                                      
     6 ive proteins that bind to leaders of several chloroplast genes.                                      
     7  may be required for the expression of other chloroplast genes.                                      
     8 ymous substitution in psbA relative to other chloroplast genes.                                      
     9  has a codon usage that is unusual for plant chloroplast genes.                                      
    10 (ii) determine whether it is possible to use chloroplast gene amplification to overexpress chloroplas
    11 ht large subunits (RbcL) encoded by a single chloroplast gene and eight small subunits (RbcS) encoded
    12 studies, however, the conservative nature of chloroplast gene and genome evolution often limits phylo
  
  
    15 ded transcription factors that regulate both chloroplast genes and nuclear genes encoding chloroplast
    16 en codon use of plant psbA and Chlamydomonas chloroplast genes and the tRNAs coded by the chloroplast
  
  
    19 ficant role in determining the codon bias of chloroplast genes but that it acts with different intens
  
  
  
  
    24 of spinach petD precursor mRNA (pre-mRNA), a chloroplast gene encoding subunit IV of the cytochrome b
    25 that specifically inhibits expression of the chloroplast gene encoding the large subunit of ribulose-
    26 steps: thylakoid protein targeting (cpSecE), chloroplast gene expression (polynucleotide phosphorylas
    27 osttranscriptional steps in mitochondrial or chloroplast gene expression and that they may typically 
    28 hat luxCt is capable of reporting changes in chloroplast gene expression during a dark to light shift
  
    30 rd to plant physiology, namely regulation of chloroplast gene expression in response to plant defense
    31 ch, we show that it detects known defects in chloroplast gene expression in several nuclear mutants o
    32 d a recently developed system of repressible chloroplast gene expression in the alga Chlamydomonas re
    33  we show that ppGpp is a potent regulator of chloroplast gene expression in vivo that directly reduce
  
    35 es that regulate chloroplast development and chloroplast gene expression provide part of this coordin
    36 t feature of the coordination of nuclear and chloroplast gene expression required for the assembly of
  
    38 Therefore, we developed a robust repressible chloroplast gene expression system in the unicellular al
    39 ic compartment exerts anterograde control on chloroplast gene expression through numerous proteins th
    40 nucleases and RNA-binding proteins influence chloroplast gene expression through their roles in RNA m
  
    42 rdtii, ncc1 and ncc2 (for nuclear control of chloroplast gene expression), which affect two octotrico
    43  chloroplast genome sequence and analyses of chloroplast gene expression, and (e) the creation of a W
    44 e show that luxCt is a sensitive reporter of chloroplast gene expression, and that luciferase activit
    45 protein (gfp) has been used as a reporter of chloroplast gene expression, but because of high auto-fl
  
  
  
  
  
  
  
  
    54 rm answers to several lingering questions in chloroplast gene expression: (1) the overlapping atpB/at
  
  
  
    58 ) were estimated for a number of nuclear and chloroplast genes in a sample of centric and pennate dia
    59 ctive transcription and translation of algal chloroplast genes in an animal host and are discussed in
  
  
  
    63 ulatory sequences in intergenic regions near chloroplast genes in seven plant species and in promoter
    64 the initiation codon (the -1 triplet) of two chloroplast genes in the alga Chlamydomonas reinhardtii.
    65 fs shared by intergenic sequences of most of chloroplast genes, indicating that these genes are regul
    66  blot surveys to assess the integrity of the chloroplast gene infA, which codes for translation initi
  
  
  
  
  
  
    73 A population in plant psbA and Chlamydomonas chloroplast genes may be the result of differences in se
    74 ves from all tribes in this family using the chloroplast gene ndhF (where ndhF is the ND5 protein of 
    75 uencing of DNA and RNA demonstrated that the chloroplast genes of Boodlea composita are encoded on 1-
    76 ery similar to the codon use observed in the chloroplast genes of the green alga Chlamydomonas reinha
    77 ences and applied it to 22 mitochondrial and chloroplast gene pairs, which last shared common ancestr
    78 for plant mitochondrial genes (PREP-Mt), for chloroplast genes (PREP-Cp), and for alignments submitte
  
  
  
  
    83 uct the evolution of codon usage bias in the chloroplast gene rbcL using a phylogeny of 92 green-plan
  
  
    86 ircadian rhythms of transcription of several chloroplast genes, revealing one pathway by which the nu
    87 is system to study the role of two essential chloroplast genes: ribosomal protein S12 (rps12), encodi
  
    89 lace, on an average, at a slower rate in the chloroplast genes than in the nuclear genes: a rate vari
  
  
    92 ding factors that control steps ranging from chloroplast gene transcription to post-translational pro
  
    94  of mcd3, mcd4 and mcd5, transcripts from 32 chloroplast genes were analysed by RNA filter hybridizat
    95 nt difference in the frequency of editing in chloroplast genes, which lack the mutation rate variatio
    96 D in plastid translation initiation, uncover chloroplast genes whose translation is influenced by SD-
  
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