ライフサイエンスコーパス: clade

1 volution are well studied within the hominin clade.

2 ted with azole resistance in each geographic clade.

3 an be retrieved individually or by taxonomic clade.

4 and dental size and shape within the hominin clade.

5 tion picture of functional evolution in this clade.

6 lations, and evolution continues within each clade.

7 SC) red/orange-fruited species in the tomato clade.

8 closely related and formed a distinct single clade.

9 subtype H fragments branched basal to the H clade.

10 belong to the dominant H58 Salmonella Typhi clade.

11 MCRPEC also included 17 unreported ST clades.

12 from northern Iran as basal to the L. dispar clades.

13 ciated with higher species numbers in extant clades.

14 ithin, and between, 'species', also known as clades.

15 revealed the presence of two different GET3 clades.

16 he degree of co-occurrence of species within clades.

17 e, facilitating systematics studies of focal clades.

18 all therians and is retained by many extant clades.

19 the strength varied between growth forms and clades.

20 tzieae is monophyletic and divided into five clades.

21 nts and volant herbivores in various therian clades.

22 gle- and multi-locus alignments for specific clades.

23 architecturally conserved across hantavirus clades.

24 ng the earliest and abundant bifidobacterial clades.

25 esenting all four characterized phylogenetic clades.

26 ive the pattern of young, depauperate marine clades.

27 cting an Early Triassic divergence for those clades.

28 of Dinosauria and the subsidiary dinosaurian clades.

29 the variation in traits across phylogenetic clades.

30 eographic variation in diversification among clades.

31 ed Gammaproteobacteria SAR86, SAR92 and OM60 clades.

32 rsification (speciation minus extinction) in clades.

33 chemotaxonomic distinction of thaumarchaeal clades.

34 rates of skull-shape evolution in these two clades.

35 ga to phylogenies for the major lepidopteran clades.

36 epandemic vaccine strains representing these clades.

37 e tribe Tropidocephalini is divided into two clades.

38 entified flux heterogeneity among Drosophila clades.

39 abolic interactions in more deeply branching clades.

40 Genes in Clade 2 are expressed earlier than Clade 1 (anther stages 2-9), while genes in Clade 3 are

41 Furthermore, Clade 1 contained 12 genes whose predicted orthologs in

42 tenuated influenza vaccines (pLAIVs) against clade 1 H5N1 viruses on an Ann Arbor cold-adapted (ca) b

43 with clade 2.3.4.4 and 2.2.1 viruses but not clade 1 or 2.1 viruses.

44 nted A/Anhui/1/2005 following priming with a clade 1 vaccine were characterized by microneutralizatio

45 Antigenically, clade 1.1.2, 2.3.2.1a, 2.3.2.1b, and 2.3.2.1c viruses re

46 ion-inhibition antibody titres against H5N1 (clades 1, 2.1.3.2, and 2.3.4) were detected in the LAIV

47 g orders of magnitude in volume in different clades [1].

48 Genes in Clade 2 are expressed earlier than Clade 1 (anther stage

49 The CTDHs from clade 2 have a cysteine in position 103.

50 optimally prepare for the further spread of clade 2.2.1 or 2.3.4.4 viruses.

51 n gene of a highly pathogenic wild-type (wt) clade 2.2.1.1 virus, A/Egypt/N03434/2009 (Egy/09) (H5N1)

52 many human infections caused by a new clade (clade 2.2.1.1) of goose/Guangdong (gs/GD) lineage H5N1 v

53 Clade 2.2.2.1 highly pathogenic avian influenza H5N1 vir

54 tial of a stockpiled A(H5N1) A/Anhui/1/2005 (clade 2.3.4) vaccine to elicit cross-reactive antibody r

55 /69 ca-vaccinated ferrets cross-reacted with clade 2.3.4.4 and 2.2.1 viruses but not clade 1 or 2.1 v

56 ses, suggesting consideration of alternative clade 2.3.4.4 CVVs.IMPORTANCE Highly pathogenic avian in

57 range adaptation.IMPORTANCE The outbreak of clade 2.3.4.4 H5 highly pathogenic avian influenza (HPAI

58 f initial Eurasian H5N8 and reassortant H5N2 clade 2.3.4.4 HPAI viruses in the United States were inv

59 lity with the 2014 initial wild bird-adapted clade 2.3.4.4 virus, with potential acquisition of mutat

60 Clade 2.3.4.4 viruses (H5N1 and H5N6) were likely introd

61 ere demonstrated to inhibit some but not all clade 2.3.4.4 viruses, suggesting consideration of alter

62 hly pathogenic avian influenza H5Nx viruses (clade 2.3.4.4) caused outbreaks in US poultry.

63 t neutralize recent North American isolates (clade 2.3.4.4), whereas antisera from dk/Hok/69 ca-vacci

64 Clade 1 (anther stages 2-9), while genes in Clade 3 are expressed later (stages 10-12).

65 l influenza vaccine was updated to include a clade 3C.2a H3N2 strain; however, the egg-adapted versio

66 able to efficiently recognize a glycosylated clade 3C.2a H3N2 virus.

67 During the 2014-2015 influenza season, clade 3C.2a H3N2 viruses possessing a new predicted glyc

68 e proportion of the clades in ST22 (14 of 21 clades; 67%) and ST45 (7 of 13; 54%) included inpatients

69 Clade 7.2 viruses, although detected in only low numbers

70 The SOSIP.664 form of a clade A Env, BG505, yields a homogeneous and well ordere

71 e ABA and DOG1 dormancy pathways converge at clade A of type 2C protein phosphatases.The DOG1 protein

72 Two of them belong to clade A of type 2C protein phosphatases: ABA-HYPERSENSIT

73 onary history of three selected phylogenetic clades (A, B and C).

74 However, for both clade age estimates, relative abundance decreased with a

75 However, the two clades also exhibited distinct responses to copper.

76 tically, Decemunciger appears to be a sister clade among current vent and seep deep-sea Ampharetinae.

77 triplication at the base of the Asterids II clade and a sunflower-specific whole-genome duplication

78 ategies to deal with Cu toxicity at both the clade and subclade level, implying that metal toxicity a

79 However, clades and geographic regions are accumulating newly des

80 ducts.IMPORTANCE HIV-1 group M includes nine clades and many recombinants.

81 o the spread of antibiotic resistance across clades and species, and to the avoidance of clonal inter

82 re only four minor changes in the chimpanzee clade, and all were reversions to the ancestral conditio

83 , including CD1, FLT3, CX3CR1, and CCR6 Each clade, and each member of both clades, was discerned by

84 oxidative activity has escalated within one clade, and trichomes have diverged across the phylogeny.

85 cross Pangaea into a previously unrecognized clade, Aphanosauria.

86 Several of these clades appear to participate in the biogeochemical cycli

87 nary diversification of major Marinimicrobia clades appears to be closely related to energy yields, w

88 However, live birth is unknown in the major clade Archosauromorpha, a group that first evolved some

89 Individual clades are characterized by disparate evolutionary rates

90 in marine habitats, since all extant marine clades are relatively young.

91 Dating estimates reveal that myrmecoid clades are separated by substantial phylogenetic distanc

92 Several phototrophic bacterial clades are thought to have evolved before oxygenic photo

93 The two major American oak clades arose in what is now the boreal zone and radiated

94 lade was distinct from a macrophage/monocyte clade, as supported by higher mRNA expression levels of

95 IFN genes, belonging to distinct gene family clades, as well as their cognate receptor genes.

96 contribute to the immune-mediated control of clade B HIV-1 infection, yet there remains a relative pa

97 y five loci at genome-wide significance, the clade B serpin (SERPINB) gene cluster at 18q21.3, the cy

98 t 11 tier 2 or 3 viruses was assessed in 163 clade B spontaneous controllers of HIV.

99 The parental protein target, the clade B strain B41 SOSIP.664 gp140, does not bind the br

100 large panel of diverse tier-2 isolates from clades B and C was analyzed.

101 ly published clustering of the mitochondrial clades based on the mtDNA open reading frame (ORF).

102 a identified when coupling shotgun data with clade-based taxonomic algorithms, previous studies that

103 ean distribution, and this easily recognized clade bears an elongated rostrum with posteriorly retrac

104 ferences lead us to propose that Bathycoccus clade BII represents a separate species which tolerates

105 other non-seed-plant ANT genes to the euANT clade but in a branch separate from BBM genes.

106 It does not belong to the F3'5'H clade, but resembles biochemically characterized F3'Hs (

107 the rapid divergence of phenotypes within a clade, but this theory ignores abiotic effects.

108 back evidence of reproductive biology in the clade by roughly 50 million years, and shows that there

109 rated that isolates were grouped into unique clades by geographic region.

110 We generated a stabilized, soluble clade C Env (16055 NFL) and determined its crystal struc

111 f HIV infections worldwide, but well-ordered clade C Env trimers are more challenging to produce due

112 s panels, chosen from 200 well-characterized clade C envelope (Env)-pseudotyped viruses from early in

113 We chose from 200 southern African, clade C envelope-pseudotyped viruses with neutralization

114 pared to anti-V3 and anti-CD4bs MAbs against clade C gp120ZM109 ADCP activity mediated by V2 and V3 M

115 based HIV/AIDS vaccine candidates expressing clade C HIV-1 antigens, with one of them lacking the vac

116 oster doses with NYVAC-C-KC vectors plus the clade C HIV-1 gp120 protein (weeks 12 and 24).

117 be efficacious in sub-Saharan Africa, where clade C infection is dominant.

118 n of HIV-specific CD4(+) T cell responses in clade C infection is particularly important for developi

119 ne protection against HIV-1, particularly in clade C infection, remains incomplete.

120 ralizing antibodies and 30 sera from chronic clade C infections.

121 nAbs) and sera from 30 subjects with chronic clade C infections.

122 Clade C is the most common lineage, responsible for roug

123 To support planned and ongoing studies where clade C predominates, here we describe three virus panel

124 new in vivo protective epitope, (ii) a novel clade C SHIV for challenge studies, and (iii) a highly p

125 However, a high-resolution clade C structure is critical, as this subtype accounts

126 immunodominant Gag CD4(+) T cell epitopes in clade C virus infection, constructed MHC class II tetram

127 Here, we show how to produce trimers from a clade C virus, CZA97.012, by using an array of protein e

128 attenuated poxvirus vector NYVAC expressing clade C(CN54) HIV-1 Env(gp120) and Gag-Pol-Nef antigens

129 cinia virus host range genes and express the clade C(ZM96) trimeric HIV-1 gp140 protein or a Gag(ZM96

130 mmune responses in individuals infected with clade C, which is responsible for the majority of HIV in

131 cell responses in a cohort of untreated HIV clade C-infected persons.

132 We developed clade C-specific panels for use as standardized reagents

133 fferent trials and study sites testing HIV-1 clade C-specific products.IMPORTANCE HIV-1 group M inclu

134 ns in Australia's most successful gymnosperm clade, Callitris, the world's most drought-resistant con

135 Comparable taxonomic ranks within clades can facilitate more consistent classifications an

136 2015, many human infections caused by a new clade (clade 2.2.1.1) of goose/Guangdong (gs/GD) lineage

137 icted phenotypic effects, hemagglutinin (HA) clade classifications, an automated tool for HA subtype

138 formed a monophyletic group within a larger clade comprising three other included Deltocephalinae.

139 t SNAPs were distributed in six monophyletic clades corresponding to the major plant lineages.

140 uggest that, at a global scale, the northern clade could contract its solitarious recession range, wh

141 Beetle-fungus specificity is clade dependent and ranges from strict to promiscuous.

142 ens, the assay displayed 100% agreement with clades determined by HA sequencing coupled with phylogen

143 ly isolated mbf1 genes formed a monophyletic clade different from other lichen-forming fungi and Asco

144 s of diversification, clade origination, and clade dispersal.

145 that the face and braincase regions of both clades display different degrees of integration.

146 olates from European wild snakes reside in a clade distinct from the North American isolates examined

147 humans and fish revealed they formed a tight clade distinguished by 93 single-nucleotide polymorphism

148 The clade diverged from other Brassicaceae crown-group clade

149 diverged from other Brassicaceae crown-group clades during the Oligocene, followed by subsequent Mioc

150 The inferred ancestral karyotype of clade E (CEK; n = 7) originated from an older n = 8 geno

151 We found that three Clade E Growth-Regulating (EGR) Type 2C protein phosphat

152 gle Arabidopsis thaliana gene, At3g57630, in clade E of the inverting Glycosyltransferase family GT47

153 found that a plurality of modern vertebrate clades examined are best fitted by pulsed processes over

154 ed that the geographical spread of the three clades followed a heterogeneous spatial diffusion proces

155 We tentatively show that, in clades for which species occupy similar habitats, specie

156 used to define recent transmission clusters (clades) for the 3 major clones.

157 been tested only in a few lineages or small clades from the fossil record.

158 unctional diversification for three SEP1/2/4 clade genes in regulation of inflorescence meristem patt

159 kin-8 (IL8), and serpin peptidase inhibitor, clade H (SERPINH1) and chemokine ligand 4 (CCL4), while

160 hensive mapping of WGDs within a major plant clade has led to uncertainty regarding the potential ass

161 e HIV-1 Env immunogens representing distinct clades have been proposed to improve immunogenicity.

162 We here use the largest ant-plant clade (Hydnophytinae), with different levels of speciali

163 The Clade I representative induced expression of genomic isl

164 ccus from two co-occurring major mesotrophic clades (I and IV).

165 Accumulibacter population from clade IIC to clade IA, based on qPCR monitoring of polyphosphate kina

166 ve denitrifying PAO niche for Accumulibacter clade IA.

167 A formerly overlooked group (clade II) in the environment include a large fraction of

168 the dominant Accumulibacter population from clade IIC to clade IA, based on qPCR monitoring of polyp

169 f Chlorobi classified as Chlorobiales;SJA-28 Clade III, the first reported enrichment of this lineage

170 NBA strains form a single putatively extinct clade in the Y. pestis phylogeny.

171 hat documents early stages of the H. sapiens clade in which key features of modern morphology were es

172 distribution of IS families across taxonomic clades in Archaea and Bacteria.

173 ctions are split between the SoPIN1 and PIN1 clades in grasses.

174 A large proportion of the clades in ST22 (14 of 21 clades; 67%) and ST45 (7 of 13;

175 However, those reptilian clades, including archosaurs and their closest relatives

176 eeding structure present in several tetrapod clades, including modern birds.

177 In the Inverted Repeat-Lacking Clade (IRLC) of legumes, this differentiation is termina

178 se data suggest that this virulent Perkinsea clade is an important pathogen of frogs in the United St

179 tility of bacteria within the Cycloclasticus clade is higher than previously assumed, and highlight t

180 itarious recession range, while the southern clade is likely to expand its recession range.

181 This clade is the sister taxon of Ornithodira (pterosaurs and

182 use sequencing of numerous genomes from many clades is coupled to existing rich methodology that allo

183 cter DC5-80-3 cluster (also known as the RCA clade) is among the most abundant bacterial lineages in

184 60 amino acids and neutralized 72% of cross-clade isolates (n = 117) with a potent median IC50 of 0.

185 f neutralization breadth (20%, n = 117 cross-clade isolates) in 42 days and 96% breadth (n = 117) at

186 Copper incubation experiments suggest that Clade IV populations may harbour stress-tolerant subgrou

187 hern California Bight populations, while the Clade IV representative downregulated Fe-limitation prot

188 e most common genotype (32.33%) containing a clade IV-A HA gene, a 2002-lineage NA gene, an M-pdm09 g

189 ng evidence of niche partitioning at the sub-clade level.

190 The longevity of asexual clades may be correlated with the maintenance of heteroz

191 Reintroduction of any PLT clade member in the mutant primordia completely restores

192 Traditionally, co-occurrence among clade members has been suggested to be disadvantageous b

193 pothesize that increased co-occurrence among clade members promotes mutualist exchange, niche expansi

194 in this paper pinpoints geographic areas and clades most urgently requiring additional systematic stu

195 Notably, two Marinimicrobia clades, occupying different energetic niches, express ni

196 -genome transcriptional profiling revealed a clade of "true dendritic cells" consisting of Langerin(+

197 The clade of 11 C. acnes clinical isolates was determined by

198 re transcriptome is dependent upon the HSFA1 clade of Arabidopsis HSFs, which cause a rapid and dynam

199 tentially important, but difficult to define clade of artiopods.

200 phus californianus) are members of a diverse clade of carnivorous mammals known as pinnipeds.

201 oplasmic glycosyltransferase from an ancient clade of CAZy family GT32 to catalyze transfer of the fo

202 nt prokaryote belonged to an uncharacterized clade of Chlorobi classified as Chlorobiales;SJA-28 Clad

203 ironmental niche model for the Sunda Islands clade of D. melanostictus projected into Wallacea.

204 still closely related to and derived from a clade of functionally conserved Rab11 genes, we were abl

205 This clade of fungi predominated in fungal communities under

206 terra firme origin for this early branching clade of legumes.

207 ns, and are used in drug-like roles by every clade of life, but their study has been hampered by a re

208 lipoyltransferase and is a member of a novel clade of lipoate attachment enzymes.

209 Xandarellida is a well-defined clade of Lower Palaeozoic non-biomineralized artiopodans

210 lade of teleost fishes (Gymnotiformes) and a clade of mammals (Carnivora), both of which exhibit subs

211 eral types of hPSCs using a more diversified clade of mammals, the ungulates.

212 Phylogenetic analysis identified a clade of MHC-B, defined by residues 45-74 of the alpha1

213 21) and form a monophyletic group within the clade of North American USA300.

214 The degree of miscall varied by clade of organism, pipeline and specific settings used.

215 Prp represents a new clade of previously uncharacterized cysteine proteases,

216 ility in the face and braincase modules of a clade of teleost fishes (Gymnotiformes) and a clade of m

217 ubique and most other members of the SAR 11 clade of the Alphaproteobacteria, can evade filtration b

218 by conventional BLAST searches, an emergent clade of tombus-like viruses, and an example of viral en

219 A deep-branching clade of trypanosomatid narnaviruses was found, notable

220 tracellular NH2OH formation by the different clades of ammonia-oxidizing microbes.

221 proach that enables identification of six HA clades of contemporary A(H3N2) viruses.

222 D-statistic among genera and inside the main clades of Diplostephium indicate reticulate evolution as

223 alyses show the presence of several distinct clades of enzymes that relate to differences in modes of

224 ibutions of multiple, antigenically distinct clades of HPAI A(H5) viruses in Vietnam, the vaccine eff

225 Several clades of mangrove trees independently invade the interf

226 Few clades of plants have proven as difficult to classify as

227 ylogenetics may be a tool for predicting new clades of RSV in impending seasons.

228 e identified that we termed High Titre (HiT) clades of RSV.

229 nt in both the achatinoid and non-achatinoid clades of the Stylommatophora (and slugs and shelled slu

230 rfectly conserved between viruses from three clades of VZV.

231 ons on an objective basis, changing ranks of clades only when inconsistent with most taxa in a phylog

232 formation can be downloaded by user-selected clade or multiple habitat-specific sets of representativ

233 ared in the sea, either in marine-colonizing clades or by arising separately in clades that never lef

234 Tree shrews share membership in the same clade, or evolutionary branch, as rodents and primates.

235 ystems have higher rates of diversification, clade origination, and clade dispersal.

236 inosaurs have been divided into two distinct clades-Ornithischia and Saurischia.

237 rnithischia and Theropoda (united in the new clade Ornithoscelida), with Sauropodomorpha and Herreras

238 onversely, there is little alignment between clades outside the AP1/PU.1 element.

239 esistance varied widely across the Callitris clade (P50 : -3.8 to -18.8 MPa), and was significantly r

240 declines of entire plant clades while other clades persist despite changing environments.

241 We suggest that one reason why some clades persist is that species within these clades use s

242 (-) ) with legumes belonging to the galegoid clade (Pisum sativum, Vicia faba and Vicia hirsuta).

243 nt reduction of notal fusion in more derived clades, presumably due to wing rotation during developme

244 s that they are distributed in the five main clades previously described (group 1-5).

245 melanogaster than in the Drosophila simulans clade, primarily due to Y-linked retrotranspositions bei

246 s of 35 species representing three mammalian clades: primates, rodents and bats.

247 A AAA+ ATPase in the clamp loader clade, RarA protein is part of a highly conserved family

248 f viruses within an important trypanosomatid clade relevant to human disease.

249 suction feeding evolved separately within a clade removed from modern baleen whales.

250 f four species from the Diplonema/Rhynchopus clade, revealing a considerable genomic plasticity.

251 w that X-cells group in two highly divergent clades, robustly sister to the bivalve parasite Perkinsu

252 eport that the remaining members of the RVE8 clade, RVE3 and RVE5, play only minor roles in the regul

253 k in morphologic rates occurring late in the clade's history.

254 us Prochlorococcus, the alphaproteobacterial clade SAR11 and the gammaproteobacterial clade SAR86, wh

255 ial clade SAR11 and the gammaproteobacterial clade SAR86, which together represent over 50% of the ce

256 ic scales showed that different lepidopteran clades select hosts based on different defenses, suggest

257 phenotypic regulatory Type II MADS-box gene clades (SEP1, SQUA, TM8, SEP3, FLC, AGL6, and TM3).

258 Among the changed genes, three clades showing differential expression patterns were con

259 erally regarded as sister groups forming the clade Silicea, although the nature of their last common

260 Strain identification revealed subspecies clades specific to body sites; it also quantified specie

261 ple base chromosome numbers, can result from clade-specific genome duplications followed by diploidiz

262 rved miRNAs, we observed unexpected cases of clade-specific variation in 5' end precision, occasional

263 ermit comprehensive curation of species- and clade-specific variation in miRNA identity, abundance, a

264 Our analysis of gene content across the clade suggests that Ent.

265 e can fundamentally impact tree topology and clade support in phylogenomic inference.

266 o the traditional framework of linking plant clade/taxonomic diversity to microbial taxonomic diversi

267 While these species and clades tend to be of limited clinical relevance, they co

268 transformed space, we identified neighboring clades that may have adapted to distinct human body site

269 olonizing clades or by arising separately in clades that never left the sea.

270 es, which grouped into three main geographic clades that were concordant with the distribution of mic

271 nd Indianapolis, and that they form a unique clade (the US Nm urethritis clade, US_NmUC).

272 Of the two MPXV clades, the Congo Basin strain is associated with severe

273 he carbon fixation pathway that defines this clade-the 3-hydroxypropionate bicycle-evolved late in Ea

274 individual organisms and across taxonomical clades, through graphical representation or through comm

275 ad specificity for E2 paralogs of the Ubc4/5 clade to assemble Lys(63)-linked polyubiquitin chains.

276 eage of endofungal symbionts that are sister clade to Burkholderia.

277 e discovery provides new information for the clade Triadophlebiomorpha during the Late Triassic and e

278 RNA helicase that represents a separate sub-clade unique to green photosynthetic organisms, consiste

279 ey form a unique clade (the US Nm urethritis clade, US_NmUC).

280 clades persist is that species within these clades use similar habitats, because such similarity may

281 with climate and the diversification of this clade using a time-calibrated phylogeny.

282 ylogenies to study the diversity dynamics of clades, usually by correlating changes in diversificatio

283 The dendritic cell clade was distinct from a macrophage/monocyte clade, as

284 itionally, Diandongosuchus supports that the clade was present across Pangea, suggesting early ecosys

285 ance of strains from environmentally adapted clades was greater in secondary environments compared to

286 and CCR6 Each clade, and each member of both clades, was discerned by specific upregulated genes, whi

287 Six hemagglutinin gene clades were characterized.

288 Molecular dating shows that the five major clades were established during the Eocene period, but mo

289 mpared to the phylogenetics of RSV, emergent clades were identified that we termed High Titre (HiT) c

290 We anticipate that examination of other clades where the relationship between environmental chan

291 Swanscombe cranium belong to the Neandertal clade, whereas the Arago hominins have been attributed t

292 es (CCOs) in metazoans, the BCO2-like (BCOL) clade, which contains lancelet, nematode, and molluscan

293 nobacteria OM1 and Gammaproteobacteria KI89A clades while nitrate enriched Gammaproteobacteria SAR86,

294 t decades have seen declines of entire plant clades while other clades persist despite changing envir

295 onsistently, throughout the geological past, clades whose species occupied similar habitats often per

296 comparative framework for testing if and how clade-wide rates of phenotypic evolution vary with abiot

297 rgets and estimated associations of specific clades with adverse birth outcomes.

298 e branches, sometimes leading to depauperate clades with unusual bill morphologies.

299 members are affiliated with the Roseobacter clade within the Rhodobacteraceae (Alphaproteobacteria).

300 iance revealed that covariation of bacterial clades within human body sites increases with phylogenet