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1 nded DNA-binding protein (SSB), binds to the clamp loader.
2 9-1-1) clamp complex together with Rad17-RFC clamp loader.
3 ded onto DNA by a replication factor C (RFC) clamp loader.
4 n conformation to be assembled onto DNA by a clamp loader.
5 clamp, and, replication factor C (RFC), the clamp loader.
6 ubunit to the function of the M. acetivorans clamp loader.
7 physically or genetically with a replication clamp loader.
8 clamp loading activity of the M. acetivorans clamp loader.
9 previously crystallized extended form of the clamp loader.
10 a highly asymmetric and extended form of the clamp loader.
11 conformation seen earlier for the bacterial clamp loader.
12 assembly at primer-template junctions by its clamp loader.
13 ep groove or cleft and is similar to the RFC clamp loader.
14 Pase active subunits of the Escherichia coli clamp loader.
15 C-C serves as a critical swivel point in the clamp loader.
16 ght-handed spiral to match the spiral of the clamp loader.
17 aces of the delta and delta' subunits of the clamp-loader.
18 mp processivity factor, and the DnaX complex clamp-loader.
19 the mechanism of eukaryotic and prokaryotic clamp loaders.
23 lize a fundamentally different mechanism for clamp loader activation than do these other organisms.
25 is subunit initiates RFC activation, and the clamp loader adopts a spiral conformation that stabilize
26 d possibly serves as a scaffold on which the clamp loader adopts the appropriate conformation for DNA
29 tion of the FRET pair in the presence of the clamp loader and ATP may be ascribed to either further o
31 ysis, the Rad1731 clamp is released from the clamp loader and can slide across more than 1 kb of dupl
32 interaction between the E.coli gamma complex clamp loader and DNA using UV-induced protein-DNA cross-
33 g of the multistep mechanism of a eukaryotic clamp loader and furthermore facilitates comparative ana
34 The switch requires the tau subunit of the clamp loader and is regulated by different DNA structure
36 fic interactions between S. solfataricus RFC clamp loader and PCNA permit us to superimpose our data
38 re performed to test for dissociation of the clamp loader and primase from an active replisome in vit
39 ally similar to the replication factors, RFC clamp loader and proliferating cell nuclear antigen poly
42 merase, (3) clamp binding to DNA followed by clamp loader and then polymerase, and (4) polymerase bin
44 s and clamps coordinate their actions with a clamp loader and yet other proteins to form a replisome
45 aB by a mechanism akin to that of polymerase clamp loaders and indicate that bacterial replicative he
47 presence of primase, helicase, Pol III core, clamp loader, and beta-clamp initiates DNA synthesis on
48 tion between replication factor C (RFC), the clamp loader, and DNA ligase I in human cell extracts.
49 eterodimer interacted normally with the DnaX clamp loader, and was loaded onto DNA slightly more effi
50 unit of the hRad17-RFC cell cycle checkpoint clamp loader, and with each of the subunits of its DNA s
52 ia coli, Saccharomyces cerevisiae, and human clamp loaders, and the two protein Pyrococcus furiosus a
53 sus and Methanobacterium thermoautotrophicum clamp loaders, and thus far the site(s) responsible for
61 Therefore, this work identifies the DNAP III clamp loader as a new target for inhibition of bacterial
62 ring interactions of the clamp with the DnaX clamp loader, as well as the replicative DNA polymerase,
64 richia coli DNA polymerase III gamma complex clamp loader assembles the ring-shaped beta sliding clam
65 ntameric tau3-delta-delta' Bacillus subtilis clamp-loader assembles via multiple pathways, which diff
66 onserved both in bacterial and in eukaryotic clamp loader ATPases appears to play a critical role.
67 ow that four ATP ligands must bind to the T4 clamp loader before the loader can be fully "activated"
70 amps that have transiently opened or whether clamp loaders bind closed clamps and actively open clamp
71 x binding to DNA followed by polymerase, (2) clamp loader binding to DNA followed by clamp and then p
72 ree-step 'bind-open-lock' model in which the clamp loader binds a closed clamp, the clamp opens, and
77 ot due to altered interactions with the DnaX clamp loader, but rather was the result of impaired beta
78 osed of either form of DnaX are fully active clamp loaders, but tau confers important replicase funct
79 ovides a unique perspective into the E. coli clamp loader by providing a measure of the relative timi
80 here that the Escherichia coli gamma complex clamp loader can load the beta clamp onto a 5' primed si
82 defect was measured with a mutant RFC-Rad24 clamp loader carrying a rfc4K55R ATP-binding mutation, w
85 tudies, charged/polar amino acids inside the clamp loader chamber interact with the double-stranded (
86 We reveal an additional role for the DnaX clamp loader: chaperoning of the replicative polymerase
88 on identifies MgsA enzymes as members of the clamp loader clade of AAA+ proteins, but structural info
90 ation of a functional holoenzyme on DNA: (1) clamp loader-clamp complex binding to DNA followed by po
91 ent conformational rearrangements 'lock' the clamp loader-clamp complex in a stable open conformation
92 neither facilitates the formation of an open clamp loader-clamp complex in experiments presented here
93 o determine whether the formation of an open clamp loader-clamp complex is dependent on spontaneous c
98 y new crystal structures of bacteriophage T4 clamp loader-clamp-DNA complexes that capture two distin
99 structural work has been carried out on the clamp-loader-clamp-DNA polymerase alpha interactions in
100 ains of the delta and delta' subunits of the clamp loader close to each other in the inactive state,
102 ication complex, initiation factors, and the clamp loader complex (replication factor C) remained tet
103 rt the crystal structure of the five-protein clamp loader complex (replication factor-C, RFC) of the
104 lements are involved, the tau subunit of the clamp loader complex and an OB domain within the DNA pol
105 ntrast, the ATPase rate profile of the clamp-clamp loader complex exhibits a marked peak at an input
106 nt structures for the ATP-bound state of the clamp loader complex from bacteriophage T4, bound to an
107 The crystal structure of the pentameric clamp loader complex from Escherichia coli (the gamma co
112 stigate the structural changes in the E.coli clamp loader complex that result from ATP-binding and in
114 y proteins: gp45 (sliding clamp), gp44/gp62 (clamp loader complex), gp55 (late sigma-factor), and gp3
115 e-dimensional models of one form of the full clamp loader complex, gamma3deltadelta'psichi (254 kDa).
116 sembly of this holoenzyme, the seven-subunit clamp loader complex, is responsible for loading the sli
117 clamp is loaded onto DNA and unloaded by the clamp loader complex, the delta subunit of which by itse
118 t with the spiral interaction surface of the clamp loader complex, we have performed molecular dynami
119 Rad17 is a subunit of the Rad9-Hus1-Rad1 clamp loader complex, which is required for Chk1 activat
120 s need to be opened and loaded onto DNA by a clamp loader complex-a process, which involves disruptio
124 i heterodimer serves as a bridge between the clamp-loader complex and the single-stranded DNA-binding
125 e describe crystal structures of the E. coli clamp-loader complex bound to the ATP analog ATPgammaS (
130 he replicative helicase, DNA polymerase, and clamp loader complexes are consistent with the presence
132 mps, which are loaded onto DNA by pentameric clamp loader complexes belonging to the AAA+ family of a
133 there may be a conserved need for alternate clamp loader complexes during DNA damaging conditions.
140 it and one large subunit, the M. acetivorans clamp loader comprises two similar small subunits (M. ac
141 ither yeast RFC itself nor two other related clamp loaders, containing either Rad24 or Elg1, catalyze
143 previously and led to the proposal that the clamp-loader cycles between an inactive state, in which
145 ggest that the more open form of the E. coli clamp loader described earlier and in the present work c
146 interplay between gp32, primase, clamp, and clamp loader dictates the rate and efficiency of primer
147 obacter viability, and identifies a role for clamp loader diversity in responding to DNA damage.
148 dy-state FRET measurements, we show that the clamp loader-DNA complex is functional in clamp loading.
150 ition of nucleotide and clamp to the labeled clamp loader does not appreciably alter these FRET dista
151 uggested that the similarity between the two clamp loaders does not translate into the complete conse
152 targeting the delta subunit of the DNAP III clamp loader; E. coli mutations conferring gp8 resistanc
153 nitiates a slow conformational change in the clamp loader, enabling it to bind and open PCNA and to b
154 ding to RFC initiates slow activation of the clamp loader, enabling it to open PCNA (at ~2 s(-1)) and
156 d previously: replication factor C (the PCNA clamp loader), family B DNA polymerase, and flap endonuc
157 i subunit also increases the affinity of the clamp loader for the clamp in assays in which ATPgammaS
158 not appear to be due to DNA binding, as the clamp loader forms an avid complex with beta at a 5' sit
162 insights into the evolution of more complex clamp loaders from simpler ones as more complex organism
163 tearothermophilus and the tau subunit of the clamp-loader from Bacillus subtilis we show that changes
164 ignal indicated that the dissociation of the clamp-loader from this complex occurred after guiding th
168 asuring the activities of three forms of the clamp loader, gamma(3)deltadelta', gamma(3)deltadelta'ps
169 sed assay in which the E. coli gamma complex clamp loader (gamma3deltadelta'chipsi) was labeled with
170 e sigma factor), gp45 (sliding clamp), gp44 (clamp loader), gp2 (DNA end protein), and gp23 (major ca
171 a clamp loading pathway that utilizes the T4 clamp loader (gp44/62) and ATP hydrolysis initially to f
172 ture of the nucleotide-free Escherichia coli clamp loader had been determined previously and led to t
173 ot impair clamp loading activity, any mutant clamp loader harboring a mutation in MacRFCS1 was devoid
174 Crystal structures of an Escherichia coli clamp loader have provided insight into the mechanism by
176 alpha interactions in Escherichia coli, the clamp-loader-helicase interaction is poorly understood b
180 orresponds to a stable inactive state of the clamp loader in which the ATPase domains are prevented f
181 tic analyses further support the role of the clamp-loader in bacteriophage T4 as a catalyst which loa
182 The eukaryotic replication factor C (RFC) clamp loader is an AAA+ spiral-shaped heteropentamer tha
185 nterestingly, the chi subunit of the E. coli clamp loader is not required for SSB to inhibit clamp lo
186 tion between DNA ligase I and the checkpoint clamp loader is regulated by post-translational modifica
191 remarkable progress in our understanding of clamp loaders, it is still unclear how recognition of pr
192 h budding yeast showed that the 'alternative clamp loader' known as Ctf18-RFC acts by an unknown mech
194 be suppressed by overexpression of the PCNA clamp loader large subunit, Rfc1p, and by inactivation o
196 sion and signaling mechanisms as the gp44/62 clamp loader levels changed but was insensitive to chang
201 imental evidence that, indeed, the RFC-Rad24 clamp loader loads the Rad1731 clamp around partial dupl
203 ta.beta and the gamma 3 delta delta' minimal clamp loader make predictions of the clamp loader mechan
204 ge subunit) suggests that the M. acetivorans clamp loader may be an intermediate form in the archaeal
205 clamp loader, suggesting that the S. aureus clamp loader may have difficulty ejecting from heterolog
206 has been done studying the sliding clamp and clamp loader mechanism, kinetic analysis of the events f
207 minimal clamp loader make predictions of the clamp loader mechanism, which are tested in this report
210 the RFC structure, provides clues regarding clamp-loader mechanisms--suggesting, for example, that R
212 d resealed at primer-template junctions by a clamp loader molecular machine, replication factor C (RF
214 neither the function of the Rad24 checkpoint-clamp loader nor the Rad6-Rad18-mediated ubiquitination
216 r C (RFC) is a heteropentameric AAA+ protein clamp loader of the proliferating cell nuclear antigen (
217 mino acid and structural similarities to the clamp loaders of DNA polymerase sliding clamps, have sug
220 e phage T4 sliding clamp gp45 by the gp44/62 clamp loader onto DNA to form the holoenzyme and their d
221 o each other in the inactive state, with the clamp loader opening in a crab-claw-like fashion upon AT
224 e/function of the Methanosarcina acetivorans clamp loader or replication factor C (RFC) homolog.
227 open conformation, and in the second stage, clamp loaders place the open clamps around DNA so that t
228 To form a productive holoenzyme complex, clamp loader protein gp44/62 is required for the loading
229 Due to the closed ring shape of the clamp, a clamp loader protein, belonging to the AAA+ class of ATP
231 r results were obtained with antisera to the clamp loader proteins Rfc3 and Rfc4, and to PCNA, i.e. L
232 ame site as that of the delta-subunit of the clamp loader, providing the basis for a switch between t
233 as Rad24, members of the putative checkpoint clamp loader (Rad24) and sliding clamp (Rad17, Mec3) com
234 actor C (RFC), and the DNA damage checkpoint clamp loader, Rad24-RFC, using two separate fluorescence
236 s led to the hypothesis that a similar clamp-clamp loader relationship exists for the DNA damage resp
237 nd simple modeling studies indicate that the clamp loader releases DNA prior to the clamp and that DN
239 s proliferating cell nuclear antigen and the clamp loader replication factor C facilitated DNA synthe
240 with the proliferating cell nuclear antigen clamp loader replication factor C, DNA polymerase delta,
242 l structure of a nucleotide-bound eukaryotic clamp loader [replication factor C (RFC)] revealed a dif
243 A sliding clamps that are loaded onto DNA by clamp loaders [replication factor C (RFC) in eukaryotes]
244 A onto duplex DNA requires the activity of a clamp-loader [replication factor C (RFC)] complex and th
245 and opening by the Saccharomyces cerevisiae clamp loader, replication factor C (RFC), and the DNA da
247 unit-subunit interfaces by the ATP-dependent clamp loader, Replication Factor C, whose clamp-interact
248 omyces cerevisiae replication factor C (RFC) clamp loader, respectively, and assessed the impact on m
249 proposed to mirror those of the replication clamp loader RFC and the sliding clamp proliferating cel
250 protein RPA, the sliding clamp PCNA, and the clamp loader RFC slightly increase the processivity of y
251 We have purified the putative checkpoint clamp loader RFC-Rad24 and the putative clamp Rad1731 fr
252 te that the replication factor C (RFC)-CTF18 clamp loader (RFC(CTF18)) controls the velocity, spacing
253 nce assays to study the clamp (PCNA) and the clamp loader (RFC) from the mesophilic archaeon Methanos
256 R ATP-binding mutation, whereas the rfc4K55E clamp loader showed partial loading activity, in agreeme
257 We find that the replication factor C (RFC) clamp loader specifically inhibits Pol epsilon on the la
258 scherichia coli and Saccharomyces cerevisiae clamp loader specificity toward 3'DNA, fluorescent beta
259 nct conformations of the ATPase domains, the clamp loader spiral is symmetric and is set up to trigge
260 mble models of psichi-SSB4 (108 kDa) and the clamp loader-SSB4 (340 kDa) consistent with IM data.
261 asured collision cross-section (~10%) of the clamp loader-SSB4 complex upon DNA binding suggests larg
265 The gamma complex structure shows that the clamp loader subunits are arranged as a circular heterop
266 the clamp can easily match the spiraling of clamp loader subunits, a feature that is intrinsic to th
268 In particular, studies of sliding clamps and clamp-loader subunits elucidate the mechanisms of replis
269 mpare the constraints imposed on various RFC clamp-loader subunits, each of which performs a related
271 en they are loaded onto DNA by the S. aureus clamp loader, suggesting that the S. aureus clamp loader
272 selectivity to differing degrees for the two clamp loaders, suggesting variations in the mechanism by
273 that ATP utilization by the checkpoint clamp/clamp loader system is effectively different from that b
275 has been suggested that clamp opening by the clamp loader takes advantage of spontaneous opening-clos
278 tion in the C-terminal domain of the E. coli clamp loader that contributes to DNA binding and helps d
280 reminiscent of the minimal Escherichia coli clamp loader that exists in space as three gamma-subunit
283 e loaded onto primer-template DNA (ptDNA) by clamp loaders that open and close clamps around ptDNA in
285 DnaB is attached to the tau subunit of the clamp-loader that loads the beta clamp and interconnects
286 ase activity drives interactions between the clamp loader, the clamp, and the ptDNA, leading to topol
287 ase, the Pol epsilon DNA polymerase, the RFC clamp loader, the PCNA sliding clamp, and the RPA single
288 de that gp59 acts in a manner similar to the clamp loader to ensure proper assembly of the replisome
290 the psi protein, essential for coupling the clamp loader to single-stranded DNA-binding protein (SSB
291 ighlight a common role for SSBs in directing clamp loaders to 3'DNA, as well as uncover nuances in th
294 s, including DnaA, helicase, primase and the clamp loader, TrfA interaction with the beta-clamp contr
296 ow how the different subunits of an archaeal clamp loader use ATP binding and hydrolysis in distinct
298 (PCNA, clamp) and replication factor C (RFC, clamp loader), we have examined the assembly of the RFC.
299 e relatedness of the archaeal and eukaryotic clamp loaders (which are made up of four similar small s
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