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1 oncentration using liquid intake by paper (P-CLIP).
2 ication and high-throughput sequencing (HITS-CLIP).
3 after crosslinking and immunoprecipitation (CLIP).
4 d by cross-linking immunoprecipitation (HITS-CLIP).
5 ed crosslinking and immunoprecipitation (PAR-CLIP).
6 idate protein-RNA interactions in vivo (RESA-CLIP).
7 essed by intramembrane-cleaving proteases (I-CLiPs).
8 e term chemically induced liver progenitors (CLiPs).
9 n peptide (CLIP) region, nor does it present CLIP.
10 that these stubs are substrates for three I-CLiPs.
11 omatic sidewall, have the shape of molecular clips.
12 ants to mentally replay short sound or video clips.
13 s but is also processed by three different I-CLiPs.
14 rnover numbers may be a general feature of I-CLiPs.
15 hose determined recently for rhomboid-type I-CLiPs.
16 ther with sutures, staples, adhesive glue or clips.
17 s marked by endoscopically placed radiopaque clips.
18 e like human behaviors depicted in the movie clips.
19 h1's functions in telomeric silencing and H3 clipping.
20 raniotomy for meningioma removal or aneurysm clipping.
21 sing endovascular treatment or microsurgical clipping.
22 establish the supposed superior efficacy of clipping.
23 show that the MT plus-end-associated protein CLIP-170 binds tightly to formins to accelerate actin fi
24 Furthermore, we observed mDia1 dimers and CLIP-170 dimers cotracking growing filament ends for sev
26 at neither Drosophila CLIP-190 nor mammalian CLIP-170 is a prominent MT plus end tracker in neurons,
27 tivity requires interactions between EB1 and CLIP-170 plus end-tracking protein (+TIP) family members
29 ein 1 (EB1), cytoplasmic linker protein 170 (CLIP-170), and dynactin-1 (DCTN1) to initiate retrograde
30 ization is dependent on other +TIPs, EB1 and CLIP-170, but in the leading edge of the cell, CLASPs di
31 dynamics co-reconstitution system to observe CLIP-170-mDia1 complexes being recruited to growing MT e
33 ed number of cargoes absolutely dependent on CLIP-170-mediated capture to initiate transport in prima
34 tions with four other +TIPs, we propose that CLIP-190 and -170 are not essential axon extension regul
36 owever, we show here that neither Drosophila CLIP-190 nor mammalian CLIP-170 is a prominent MT plus e
37 in culture failed to reveal axonal roles for CLIP-190, even in double-mutant combinations with four o
39 oss-Linking and Isolation by Pull-Down (Chem-CLIP), a small-molecule RNA target validation approach,
42 Here we use discriminative learning on AGO CLIP and CLASH interactions to train a novel miRNA targe
43 95% CI 1.05-9.3), and necessity to perform a clip and drop procedure (aOR 30, 95% CI 3.9-237) were as
44 e, we produce data with multiple variants of CLIP and evaluate the data with various computational me
46 e Zinc Finger Protein 598 (ZNF598) using PAR-CLIP and revealed that it cross-links to tRNAs, mRNAs an
47 Here we identified Msi2 targets with HITS-CLIP and revealed that Msi2 primarily recognizes mRNA 3'
49 nctions, using NOVA1 and NOVA2 specific HITS-CLIP and RNA-seq data from mouse cortex lacking either N
51 omain of Ctp1 is required for both efficient clipping and resection of DSBs by MRN and these activiti
52 terials produced and the number of newspaper clips and bulletins published in support of polio eradic
53 events by showing people several short video clips and then asking them to recall these clips, either
54 ed crosslinking and immunoprecipitation (PAR-CLIP) and anti-m(6)A immunoprecipitation (MeRIP) approac
55 e we used cross-linking immunoprecipitation (CLIP) and ligation of miRNA-target chimeras on the Argon
56 CB concentrations in sediment, biota lipids (Clip) and porewater measured with passive samplers were
58 gnition of an unexpected finding (a surgical clip) and subjective depth perception (using a Likert sc
59 po11-oligonucleotide complexes from 5' ends (clipping) and their resection to generate invasive 3'-en
60 mpares favorably to other methods, including CLIP, and we have identified RBP targets from as little
61 4% (4.5%-22.2%)) patients allocated surgical clipping, and 10/56 (17.9% (10.0%-29.8%)) patients alloc
62 lude vein cutting, trenching, girdling, leaf clipping, and application of fluids from exocrine glands
64 uch as RNA IP (RIP) and crosslinking and IP (CLIP) are key starting points for evaluating the molecul
65 indings introduce tryptase-catalyzed histone clipping as a novel epigenetic regulatory mechanism, whi
67 the structural basis of HLA-DQ2.5's unusual CLIP association characteristics, better insight into th
70 ecipitation (doubled and halved), and annual clipping at the end of growing seasons in a mixed-grass
73 ive lipid-normalized bioaccumulation metrics Clip, Biota sediment accumulation factor (BSAF), Bioaccu
75 ndovascular coiling than after neurosurgical clipping, but the risk was small and the probability of
76 HEJ) protein, indicating that Ctp1-dependent clipping by MRN is required for Ku removal from DNA ends
80 fMRI while they viewed two versions of movie clips (colored, achromatic) of five different object cla
90 The ability to add selective removal of the clip-containing lymph nodes to SLN dissection may identi
91 of lymph nodes known to contain metastases (clip-containing nodes) as well as sentinel lymph nodes (
93 ponse of GPP compared to ER, indicating that clipping could potentially be an effective land practice
94 t 2 examined whether learning faces in video clips could generalise more effectively to a new view.
105 mount of common backgrounds present in a PAR-CLIP dataset, and we provide the user the option to use
107 coclip, on four publicly available Ago2-HITS-CLIP datasets and one unpublished in-house Ago2-dataset
113 The mutants tested, like ctp1Delta, were clipping-deficient by both genetic and physical assays-.
117 demonstrated for faces learnt through video clips, dynamic facial expression did not create better t
118 y of errors committed by others during movie clips (e.g., figure skaters falling down and persons beh
120 o clips and then asking them to recall these clips, either aloud (Experiment 1) or silently while in
125 t data compendium to date, which includes 31 CLIP experiments on 19 RBPs involved in splicing (such a
126 g and crosslinking immunoprecipitation (HITS-CLIP) experiments of human Argonaute (AGO) during HCV in
128 UV cross-linking and immunoprecipitation (CLIP), followed by high-throughput sequencing, is a powe
132 e of the intramembrane-cleaving proteases (I-CLiPs), gamma-secretase, is also intimately implicated i
133 he results show that faces learnt from video clips generalised effectively to a new expression with e
134 dency in the coiling group compared with the clipping group, but the medium-term results showed the i
135 sed to assess bioaccumulation, in the order: Clip > BSAF > BPAF > BAF, and were nonsignificant for BA
136 tal structural analyses have revealed that I-CLiPs harbor their active sites buried deeply in the mem
139 IF4A3 using individual-nucleotide resolution CLIP (iCLIP), employing either UV-C or photoactivatable
140 t (UV) crosslinking and immunoprecipitation (CLIP) identifies the sites on RNAs that are in direct co
141 s who underwent transcatheter mitral leaflet clip in 2015 were similar to patients from 2013 to 2014,
145 sham CSD (n = 9) 5 weeks after renal artery clipping, in comparison with normal Wistar rats (n = 5).
147 g blocks, two CoTPyP units and four arene-Ru clips, into a cofacial motif previously demonstrated wit
148 ovascular embolization, prostheses, surgical clips, intraorbital and other medical implants, etc.
152 MDCK epithelial cells, we used the SNAP and CLIP labeling systems to fluorescently tag temporally de
154 In cases with a clip placed in the node, the clip location at surgery (SLN or ALND) was evaluated.
157 to r(CGG)(exp) in cellulo as shown with Chem-CLIP-Map, an approach to map small molecule binding site
159 y cut within the binding sites, the original CLIP method is less capable of identifying the longer bi
161 ly targeted in the RISC, indicating that PAR-CLIP more accurately defines meaningful targeting intera
163 of node-positive disease with removal of the clipped node during SLN surgery reduces the FNR of SLN s
164 t a clip placed (n = 355) and in those where clipped node location was not confirmed at surgery (n =
168 and evaluation of resected specimens for the clipped node should be considered when conducting SLN su
176 al was to determine if pathologic changes in clipped nodes reflect the status of the nodal basin and
177 D) and selective localization and removal of clipped nodes, improves the false-negative rate (FNR) co
178 trand breaks (DSBs) requires endonucleolytic clipping of Rec12(Spo11)-oligonucleotides from 5' DNA en
180 s were scanned with fMRI while viewing movie clips of faces, bodies, and objects before and after tra
182 by UV crosslinking and immunoprecipitation (CLIP) of ribonucleoprotein complexes is critical to unde
183 e, we used crosslinking immunoprecipitation (CLIP) of the Argonaute (AGO) proteins to characterize st
184 The fact that BAF, that is, normalization of Clip on porewater concentration, largely removed all eff
185 ) or a portable gamma-camera (GC; Vitom GC), clip-on brackets were designed and printed in 3-dimensio
186 ) or a portable gamma-camera (GC; Vitom GC), clip-on brackets were designed and printed in 3-dimensio
189 e randomly allocated to either neurosurgical clipping or endovascular coiling after a subarachnoid ha
195 s a whole soft-clipping read rather than its clipped part to the target sequence, a segment of the re
196 r peak detection programs, namely CIMS, PIPE-CLIP, Piranha and Pyicoclip, on four publicly available
198 s of fine-needle aspiration biopsy who had a clip placed in the lymph node targeted for biopsy from D
203 One proposed method to decrease the FNR is clip placement in the positive node at initial diagnosis
204 participants to perceive subsequently viewed clips played at standard speed as too fast, so playback
206 power of bioorthogonal tethering to SNAP and CLIP protein tags to create a family of light-gated meta
208 The rotaxanes were prepared by a templated clipping reaction and an X-ray crystal structure shows t
212 t of AdV proteins and compared them with the clip region of the portal proteins of bacteriophages phi
218 age (respective C indexes of 0.64 and 0.73), CLIP score (0.68 and 0.75), JIS stage (0.67 and 0.70), M
219 We used a combined AGO2 RIP-seq and AGO2 PAR-CLIP-seq (photoactivatable-ribonucleoside-enhanced cross
222 interactions and RNA modification sites from CLIP-seq and RIP-seq data, and reveals the significant c
223 ssociated RBPs, FUS and TDP-43, we integrate CLIP-seq and RNA Bind-N-Seq technologies, and show that
224 methods for identifying RBP targets, such as CLIP-seq and RNAcompete, usually suffer from the false n
230 ill be widely applied to analyze large-scale CLIP-seq experimental data and can provide a practically
231 ut protein-RNA interaction data generated by CLIP-seq has provided an unprecedented depth of access t
233 fic properties of RBP binding sites, and the CLIP-seq methods, provide additional information not usu
234 immunoprecipitation followed by sequencing (CLIP-seq or RIP-seq) allows transcriptome-wide discovery
236 desorption/ionization mass spectrometry and CLIP-Seq sequencing, we determined the peptide and oligo
237 ed those regulations inferred by ChIP-Seq or CLIP-Seq to construct the GRN formed by TFs, miRNAs, and
238 s a myriad of techniques such as RNA-Seq and CLIP-Seq to identify splicing regulators and their putat
240 crosslinking/immunoprecipitation-sequencing (CLIP-seq) analysis of mouse cells and tissues to disting
241 aute immunoprecipitation and sequencing (Ago CLIP-seq) and represented 3 of the 13 tissues, indicatin
243 slinking immunoprecipitation and sequencing (CLIP-seq) identify RNAs that interact directly with CsrA
245 oprecipitation coupled with deep sequencing (CLIP-seq) we identify a set of genes involved in synapti
247 of the necessary follow-up data analysis for CLIP-seq, both to refine the exact locations of RBP bind
248 t leverages transfer learning to incorporate CLIP-Seq, knockdown and over expression experiments, whi
251 LAM, we applied it to a wide range of public CLIP-seq/RIP-seq datasets involving numerous splicing fa
255 linking immunoprecipitation (Argonaute [Ago]-CLIP) sequencing in miR-122 knockout and control mouse l
256 hes, LexisNexis archival databases, and news clipping services) and USA Triathlon (USAT) records.
257 the transcript level while intensity of the CLIP signal, number of RNA-Binding domains, location of
258 synthate allocation to the grain by spikelet clipping significantly increased white root biomass and
259 oach using genetically encoded chemical tags CLIP, SNAP, Halo, and TMP for tissue labeling; this resu
264 In this review, we discuss the genome-wide CLIP technology and focus on bioinformatics analysis.
266 with high-throughput sequencing (genome-wide CLIP) technology has recently enabled the investigation
269 ur and six and without stratification, to be clipped to standard oximeters (patients treated with oxy
270 oupled with high-throughput sequencing (HITS-CLIP) to generate the first transcriptome-wide map of mi
271 oss-Linking and Isolation by Pull Down (Chem-CLIP) to study the cellular selectivity and the on- and
272 riments (variety, mutant study, and spikelet clipping) to examine the impacts of rice plant photosynt
277 e detector/data system is saturated, causing clipping/truncation of the signal, or (c) the detector s
278 with an equimolar mixture of Pd(NO3)2 and a clip-type donor (L2) yielded a template-free multicompon
282 esence or absence of clinical signs on video clips was high (>/=89%), with interobserver concordance
283 ed by crosslinking immunoprecipitation (HITS-CLIP), we identified the vRNA binding profiles of NP for
284 ed crosslinking and immunoprecipitation (PAR-CLIP), we isolated RNAs associated with Argonaute 2 in t
287 79%) of 835 patients allocated neurosurgical clipping were alive (odds ratio [OR] 1.35, 95% CI 1.06-1
288 70 (78%) patients treated with neurosurgical clipping were independent (modified Rankin scale score 0
290 contest, additional held-out unlabelled data clips were provided to the top 10 participants and they
291 In both experiments, actively rehearsed clips were remembered in far greater detail than unrehea
292 eir hepatic differentiation ability, and rat CLiPs were shown to extensively repopulate chronically i
295 ligation of endogenous Argonaute-bound RNAs)-CLIP, which enriches miRNAs ligated to their endogenous
296 lar Ctp1 C-terminal portion is essential for clipping, while the N-terminal portion is sufficient for
300 rticipants as 10-min interictal and preictal clips, with approximately half of the 60 GB data bundle
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