ライフサイエンスコーパス: co-regulated gene

1 ond step, thus difficult to detect conserved co-regulated genes.

2 (TFs) and associated target genes in sets of co-regulated genes.

3 ave opposing effects on the transcription of co-regulated genes.

4 association, identifying a large spectrum of co-regulated genes.

5 vary greatly among the elements of different co-regulated genes.

6 catter plots, and dissection into cliques of co-regulated genes.

7 ework and algorithm PHYLOCLUS for predicting co-regulated genes.

8 biologist in detecting activity patterns of co-regulated genes.

9 zation of cis-regulatory elements in sets of co-regulated genes.

10 omoter regions of a given set of potentially co-regulated genes.

11 regulatory motifs in the upstream regions of co-regulated genes.

12 roximal promoter sequences for large sets of co-regulated genes.

13 bp G2/M-specific sequence common to a set of co-regulated genes.

14 Some of these form clusters of co-regulated genes.

15 and allow users to rapidly identify sets of co-regulated genes across a variety of tissues and a lar

16 goal of these analyses is to define sets of co-regulated genes and identify patterns of gene express

17 fying DNA-binding sites from a collection of co-regulated genes and their nearby non-coding DNA seque

18 ne expression paradigm, implying that active co-regulated genes and their regulatory factors cooperat

19 The identification of co-regulated genes and their transcription-factor bindin

20 such as the detection of co-expressed genes, co-regulated genes and transcription factor binding moti

21 de insights into how competing behaviors are co-regulated.Genes and circuits involved in sleep and se

22 his approach uncovered new regulons (sets of co-regulated genes) and their putative cis-regulatory el

23 modeling of network topology, definition of co-regulated genes, and placement of previously uncharac

24 Co-regulated genes are likely to reveal themselves by sh

25 Co-regulated genes are not identified in traditional mic

26 y by binding to the same enhancer regions of co-regulated genes as Gli1.

27 Identifying groups of co-regulated genes by monitoring their expression over v

28 ine biosynthetic genes and define a group of co-regulated genes called the A-B regulon.

29 Subsequently, 428 highly co-regulated genes (|CC| >/= 0.8) were clustered unsuper

30 combined with motif conservation upstream of co-regulated gene clusters allowed the construction of p

31 The ANN model also predicts specific co-regulated gene clusters associated with differential

32 Genes within the co-regulated gene clusters tend to have relevant functio

33 ion piggybacking, which consequently created co-regulated gene clusters.

34 Co-regulated genes consistent between the human and mous

35 gulatory modules governing the expression of co-regulated genes, Creme 2.0; and a dynamic portal to m

36 We have now identified the remainder of the CO-regulated genes encoded in a contiguous region of the

37 We confirmed co-regulated gene expression using P-element mutants.

38 he ability to retrieve upstream sequences of co-regulated genes for promoter analysis using MEME (Mul

39 silico tool to identify physical clusters of co-regulated genes from gene expression data.

40 Combinatorial sequence analysis of these co-regulated genes generated a hypothetical regulatory c

41 ing motifs in a set of promoter sequences of co-regulated genes has become an important approach to d

42 mental methods capable of generating sets of co-regulated genes have become commonplace, however, rec

43 Many SlyA- and PhoP/PhoQ-co-regulated genes have functions associated with the ba

44 In fact, all three co-regulated genes have the potential to interact not on

45 ults in increased expression of the Hha/H-NS co-regulated gene hilA without affecting the expression

46 We identified discrete groups of co-regulated genes (i.e., co-expression modules) and tes

47 It is often used for co-regulated genes identified through experimental appro

48 imulation studies and application to sets of co-regulated genes in bacteria.

49 rogram for predicting regulatory motifs from co-regulated genes in prokaryotes or lower eukaryotes; (

50 cose represses transcription of a network of co-regulated genes in Saccharomyces cerevisiae, ensuring

51 We use our framework to predict co-regulated genes in the bacterium Bacillus subtilis us

52 and on three biologically validated sets of co-regulated genes in yeasts, flies and humans.

53 uced well-defined modules of region-specific co-regulated genes, in contrast to standard coexpression

54 1-ICD-overexpressing BS149 cells revealed 42 co-regulated genes, including glycoprotein non-metastati

55 ing classifies co-expressed, and potentially co-regulated, genes into biologically informative catego

56 Identification of modules of co-regulated genes is a crucial first step towards disse

57 ted method to date for identifying conserved co-regulated genes is a two-step approach.

58 nalysis reveals that the number of conserved co-regulated genes is small in eukaryotes, as has been s

59 transcriptional patterning model is that the co-regulated genes knirps (a short gene) and knirps-rela

60 ression changes, we demonstrate a cluster of co-regulated genes known to have impact in the extracell

61 amines the upstream or downstream regions of co-regulated genes, looking for cis-regulatory bipartite

62 Furthermore, modules of co-regulated genes may only show tight co-expression acr

63 To identify co-regulated genes, MicrobesOnline can search for genes

64 ning and user-friendly platform for building co-regulated gene modules and the tools necessary for th

65 nisms from diverse phylogenetic clades (4678 co-regulated gene modules, 3466 regulators and 9291 cis-

66 he discovery of co-expressed and potentially co-regulated gene modules.

67 s are required, capable of discovering large co-regulated gene networks.

68 ne turnover and regulation of INO1 and other co-regulated genes of phospholipid biosynthesis is discu

69 ave tentatively named this novel gene Parkin co-regulated gene, or PACRG.

70 asizing common features of large clusters of co-regulated genes, our results highlight the extent to

71 meiosis-expressed gene 1 (MEIG1) and Parkin co-regulated gene (PACRG) interact, and that sperm-assoc

72 found that MEIG1 associates with the Parkin co-regulated gene (PACRG) protein, and that testicular P

73 equence similarity or clustering patterns of co-regulated genes, phylogenetic profiles, protein-prote

74 ression dataset by looking for enrichment of co-regulated genes relative to an empirical null distrib

75 We show that clusters of highly co-regulated genes representing distinct cellular pathwa

76 A major subnetwork containing 61 closely co-regulated genes showed highly significant enrichment

77 ative positioning of either co-functional or co-regulated genes, stems from two main approaches.

78 presence of false positives among the set of co-regulated genes than is the ROC AUC.

79 xies for CRMs, we endeavor to find PFRs near co-regulated genes that are comprised of similar short,

80 l model for biclustering to infer subsets of co-regulated genes that covary in all of the samples or

81 xamined the phenotypes of mutations in seven co-regulated genes that had no published role in chemota

82 put into clusters so as to infer the sets of co-regulated genes, that is, the regulons.

83 deled as a collection of regulatory modules: co-regulated genes, the conditions under which they are

84 transcription cofactors p300/HDAC1 to these co-regulated genes, thereby altering the host gene expre

85 popular technique used to identify groups of co-regulated genes, to infer unknown gene functions.

86 To identify virB co-regulated genes, we searched the Brucella suis 1330 a

87 Co-regulated genes were grouped together and visualized

88 For a given set of co-regulated genes, WGRV returns statistically enriched

89 es that are enriched in a set of potentially co-regulated genes with respect to the whole genome.

90 nd developmental stages revealed clusters of co-regulated genes with shared cis promoter elements, wh

91 p- and down- regulation of several groups of co-regulated genes, with ADR1-dependent genes being the

92 cing experiments further reveals clusters of co-regulated genes, with in situ hybridization confirmin

93 ntly challenging problem is that of defining co-regulated genes within those gene lists.