ライフサイエンスコーパス: command line

1 all utilities in PhyloNet are invoked on the command line.

2 GLANET can be run using its GUI or on command line.

3 t is written in C and can be run from a Unix command line.

4 an be used through a web interface or in the command-line.

5 ch as EST cluster databases and conventional command-line analysis applications are integrated and ac

6 The pipeline is available as both a command line and a Galaxy graphical user interface tool.

7 ally examining local genomic features on the command line and enables genome viewers to support huge

8 e 2.0 PDE reads input files specified on the command line and generates pedigree drawings without use

9 instant access to a range of pre-configured command line and graphical software applications, includ

10 t leverage the underlying database, and both command line and graphical tools for common analyses.

11 utational literacy, including platforms with command line and graphical user interfaces.

12 The tools can both be run from the Unix command line and installed into visual workflow builders

13 The utility runs from the command-line and can be easily integrated into a pipelin

14 COMKAT is equipped with command-line and graphic user interfaces from which the

15 s in molecular imaging research and has both command-line and graphical user interfaces.

16 Queries can also be run from the command-line and the database can be queried directly th

17 system on which Perl can be run, either as a command line application, in single or batch mode, or as

18 n be run from the web as well as a dedicated command line application, which allows easy integration

19 ate through console menus or specify complex command-line arguments.

20 e VCF files and organized these tools into a command-line based utility named VCF-kit.

21 A web-based server and a command line-based pipeline for RJPrimers are both avail

22 It is built upon RNATOPS, a command line C++ software package for the same purpose,

23 forqs is implemented as a command-line C++ program.

24 The JABAWS command-line client allows integration of JABAWS service

25 variant tools consists of two command-line driven programs vtools and vtools_report.

26 equired to process metabolomic data by using command-line driven software programs.

27 s obtained from sequence alignments, and the command-line driven toolset could be used as a foundatio

28 ces for RBM are predominantly text-based and command-line driven.

29 Unfortunately, Rosetta is largely a command-line-driven software package which restricts its

30 A JAVA cross-platform command line executable of ARACNe, together with all sou

31 SENECA and is available as a GUI client and command-line executable.

32 ing the source codes, which will equip their command line executables with user-friendly interface an

33 The Linux command-line executables for blastn and makembindex, doc

34 th TIGERi could use the software without any command line experience.

35 available software that can be run from the command line for high throughput applications which can

36 r, these algorithms are often distributed as command line implementations that require expertise and

37 ta is developed in C/C++ and can be used via command line in MS Windows environments.

38 Genome aims to be easily integrated with the command line, including batch processing of data, and th

39 is project is implemented in Java 7, and the command line interface (CLI) is designed to integrate in

40 ead by Pycellerator, which includes a Python command line interface (CLI), a Python application progr

41 A command line interface and the complete, open WebLogo so

42 Both tools are available with a command line interface as well as a graphical user inter

43 It provides a command line interface for easy integration into a bioin

44 ne application features a simple and concise command line interface for easy integration into high-th

45 art database search engines and a convenient command line interface for high-performance data process

46 entist with no programming experience, (2) a command line interface for scripting for a scientist wit

47 It uses a command line interface to automatically call other progr

48 imitations, ASCIIGenome runs exclusively via command line interface to display genomic data directly

49 The SurreyFBA is based on a command line interface to the GLPK solver distributed as

50 Toolbox includes a graphical user interface, command line interface, and options for speed and accura

51 ducts, but GDBB has only been available on a command line interface, which is difficult to use for th

52 eatures are available via both graphical and command line interface.

53 Its simple command-line interface allows for easy integration into

54 ree convenient interfaces: a Mac OS X GUI, a command-line interface and a simple application programm

55 In addition, the package provides a command-line interface for users with scripting and prog

56 A command-line interface is also provided.

57 VAT can either be run through a command-line interface or as a web application.

58 MSMBuilder boasts an easy to use command-line interface, as well as clear and consistent

59 graphical interface is provided as well as a command-line interface, both of which support many user-

60 h a web-based graphical user interface and a command-line interface.

61 of a colleague familiar with the computer's command-line interface.

62 rieve annotation from these catalogs via the command-line interface.

63 illions of molecules at a time with a simple command-line interface.

64 Yet many immunoinformatics tools have command line interfaces only and can be difficult to ins

65 vert between file formats or learn different command line interfaces.

66 f kinetic parameters, and both graphical and command-line interfaces to multiscale simulation algorit

67 n Core standard, includes both Web-based and command-line interfaces, and is fully open-source softwa

68 phisticated analyses that are independent of command-line knowledge.

69 and visualization tool based on the popular command-line Lucy1.

70 h processing capabilities, and added several command line modules, all of which we briefly describe h

71 on 5.14 and higher) that can be run from the command line on Linux systems and as a service on the PR

72 PRIMEGENS can be run from the command line on Unix/Linux platforms as a stand-alone pa

73 MA running under Windows and Linux (portable command-line only) are freely available at http://www.lg

74 mat and various output formats, and provides command line options for tuning almost every aspect of t

75 In contrast to most command-line or batch interactions with Rosetta, Foldit

76 The toolbox, available as command-line or with a graphical user interface, enables

77 TreeMos can be run from the command line, or within a web browser allowing the relat

78 The software is a command line perl script freely available as open source

79 Genomic Integration Site Tracker (GeIST), a command-line pipeline designed to map the integration si

80 THESEUS is a command line program for performing maximum likelihood (

81 RENCO is a C++ command line program, available at http://sourceforge.ne

82 nia' web interface, but can also be run as a command line program.

83 tegrated Genome Viewer or with a stand-alone command line program.

84 StochHMM provides a command-line program and C++ library that can implement

85 e, we present a fast, simple and automatable command-line program that extracts optimal recombination

86 SCWRL is a command-line program that typically runs in a few second

87 MASS is a command-line program to perform meta-analysis of sequenc

88 It can be used as a command-line program, a web application, or a utility li

89 to (i) execute and manage otherwise complex command-line programs, (ii) launch multiple exploratory

90 TRFolder is a command-line Python toolkit for TR-specific structure pr

91 an RNA visualization metaphor: Colorstock, a command-line script using ANSI terminal color; SScolor,

92 significant expertise in these software and command line scripting experience on Unix platforms, bes

93 le computational platform, comprising both a command-line set of tools and a C++ API, for the analysi

94 We introduce a command line software application LC-IMS-MS Feature Find

95 We implemented a command line software tool and a web interface called w4

96 The Ruby-based web framework and the command-line software (implemented in Java, with visuali

97 e HaploPOP software is freely available as a command-line software at www.ieg.uu.se/Jakobsson/softwar

98 neration, and support for running both R and command-line software on local computers and computer cl

99 ling of the web interface, (ii) links to the command-line stand-alone and web versions of the MToolBo

100 es the following features: robust standalone command line support, improved pK(a) estimation via the

101 Synima runs quickly on a command line to generate informative and publication qua

102 my database and is easily manipulated at the command-line to specify a BLAST candidate's query-covera

103 BGT is a compact format, a fast command line tool and a simple web application for effic

104 A command line tool and a web interface are available to t

105 Genomer is written as a command line tool and is an effort to make the manual pr

106 sis, we implement CGES both as a stand-alone command line tool available for download in GitHub and a

107 We present SeqLib, a C ++ API and command line tool that provides a rapid and user-friendl

108 GEScan provides four operational modes: as a command line tool, as a Galaxy Toolshed, on a Galaxy-bas

109 The command line tool, implemented in C++, is easily execute

110 We have developed a new Python command line tool, which is compatible with the widely a

111 Reaction Decoder is a robust command line tool, which performs this task with high ac

112 e, or www.broadinstitute.org/rna-seqc/ for a command line tool.

113 comb-p is a command-line tool and a python library that manipulates

114 In summary, through the command-line tool and the web server, these protocols pr

115 Tabix is implemented as a free command-line tool as well as a library in C, Java, Perl

116 resent BISQUE, a web server and customizable command-line tool for converting molecular identifiers a

117 LC-IMS-MS Feature Finder is available as a command-line tool for download at http://omics.pnl.gov/s

118 cture of RNA) is an integrated and automated command-line tool for the analysis and annotation of RNA

119 We present Epock, an efficient command-line tool that calculates pocket volumes from MD

120 ating data stored in NMR-STAR files and as a command-line tool to convert from NMR-STAR file format i

121 The BioPAX Validator is a command-line tool, Java library and online web service f

122 ble only as a computationally intensive UNIX command-line tool, restricting its use.

123 available for BAM file support as well as a command-line toolkit.

124 Command line tools are available for performing integrat

125 ALEA provides a customizable pipeline of command line tools for allele-specific analysis of next-

126 stem further allows users to integrate local command line tools residing on their own computers throu

127 Modelled after Unix/GNU/Linux command line tools, individual programs perform a single

128 with an intuitive interface and as a set of command line tools; this allows biologists and bioinform

129 Many of the BiopTools command-line tools act as filters, taking a PDB (or PDBM

130 ogether, EMIM and PREMIM provide easy-to-use command-line tools for the analysis of pedigree data, gi

131 esentation of parameters, inputs, outputs of command-line tools in so-called Common Tool Descriptor d

132 The application can be executed using either command-line tools or a user-friendly Graphical User Int

133 We present a training model for use of command-line tools when the learner has little to no pri

134 g protein structure, and BiopTools, a set of command-line tools which exploit BiopLib.

135 r interface (GUI) to streamline usage of the command-line tools, calculate data from structure librar

136 the capabilities of many R/Bioconductor and command-line tools, it makes efficient use of existing s

137 of medical images, overcoming limitations of command-line tools.

138 GLINT is a user-friendly command-line toolset for fast analysis of genome-wide DN

139 ository, and we also provide source code for command line usage under Linux and Mac OS X.

140 ment and requiring a moderate knowledge of R command-line usage.

141 and is written in Python as both a suite of command line utilities and a Python application programm

142 Meta-eqtl is a set of command line utilities written in R, with some computati

143 a queries and downloads, alignment programs, command-line utilities and more.

144 Python code and command-line utilities implementing CROC curves and metr

145 SplicePlot is a simple command line utility that produces intuitive visualizati

146 HMMSeg is a command-line utility for the scale-specific segmentation

147 ld network generator (SNG) is an open-source command-line utility that computes the hierarchical netw

148 In addition to a command line version, the suite has been integrated into

149 bic.bioc.columbia.edu/services/uniqueprot; a command-line version for Linux is downloadable from this

150 le as a web-server or a platform-independent command-line version.

151 Windows, web and command-line versions were developed to better serve dif

152 KBase) and are publicly available via API or command-line web interface.

153 ductor www.bioconductor.org and used in an R command line workflow.