ライフサイエンスコーパス: concatenate

1 m strains when a minimum of six enzymes were concatenated.

2 Here, a maximum-likelihood analysis of a concatenated 10-locus data set, as well as minimize-deep

3 d multiple substitutions per site within the concatenated (945 bp) nucleotide dataset, implying that

4 domains (protein islands), and these domains concatenated after T cell activation.

5 In a concatenated alignment of all six genes, the dN/dS ratio

6 o perform a maximum likelihood analysis of a concatenated alignment of conserved, single-copy genes.

7 Robust phylogenetic trees constructed using concatenated alignment of these genes placed M. lepromat

8 ogenies from these genes separately and as a concatenated alignment with and without small subunit (S

9 First, we concatenated alignments of all genes into a single align

10 dicate that, in both trees constructed using concatenated alignments of ribosomal proteins and trees

11 logy tests, the same methods were applied to concatenated alignments of subunits of eight conserved m

12 Phylogenetic trees for both single-gene and concatenated alignments were evaluated thoroughly by max

13 rees to the NCBI taxonomy, to trees based on concatenated alignments, and to trees produced by other

14 alpha-subunit and no mutation in the second (concatenated) alpha-subunit or an S4S5 point mutation in

15 bility method to individual agonist sites in concatenated (alpha4beta2)2alpha4 receptors, we determin

16 ological profiles were indistinguishable for concatenated (alpha7)5-nAChRs or for homomeric alpha7-nA

17 d a mutual information-based analysis of the concatenated amino acid sequences and identified an exte

18 We included *BEAST, concatenated analysis and several 'summary methods': BUC

19 Specialized domains concatenate and compact VWF during biosynthesis.

20 ed to most of the orthologous clusters, both concatenated and individual, grouped the fly with humans

21 lock device was developed using enzyme-based concatenated AND logic gates resulting in the implicatio

22 ucted from these regions, some of which were concatenated and polymerized to enhance their immunogeni

23 These tags are PCR-amplified, purified, concatenated, and then cloned and sequenced.

24 A concatenated approach to incorporate bilateral severity

25 pe II beta-turns and the resulting series of concatenated beta-turns are thought to form a beta-spira

26 With the use of concatenated bilateral severity levels for AMD, decrease

27 ght cannot transactivate via out of context, concatenated binding sites.

28 ep semantic representation, D2V-TFIDF, which concatenates both sparse and dense semantic representati

29 ed expression a gfp reporter controlled by a concatenated C subelement oligonucleotide in daf-3 mutan

30 Expression of a concatenated cDNA encoding two or four linked subunits p

31 We expressed eight concatenated cDNAs in human embryonic kidney cells, whic

32 nit induced the same rapid deactivation of a concatenated channel as that observed for homotetrameric

33 bination of synthetic amino acid analogs and concatenated channel subunits we establish two H-bonds n

34 Multimeric GIRK constructs with several concatenated channel subunits were expressed in Xenopus

35 In this study, the concatenated chromosomal sequences from the three strain

36 rneurons in their target ganglion and form a concatenated circuit that links neighboring segmental ga

37 Individual tags are linked into ditags, concatenated, cloned and sequenced.

38 ents, which analyze shared gene datasets and concatenate/coalesce these results to a final phylogeny

39 ials include full proteins in novel vectors, concatenated conserved protein regions, and polyvalent s

40 Three concatenated copies of the 10-bp Inr and its immediate 3

41 we establish a reference tree by evaluating concatenated core gene supertrees and whole genome gene

42 Phylogenetic analysis based on 397 concatenated core genes distinguished A. aphrophilus and

43 Concatenated core-gene phylogeny clusters all but one of

44 simony analysis were generated for combined (concatenated) cox2 and ITS-2 sequences from 167 individu

45 The unusual concatenated crystal structure of PrxIII consisting of t

46 ly used a priori approaches for partitioning concatenated data in maximum likelihood analyses, by gen

47 The concatenated data set is also used to estimate dates of

48 e analytical insight provided by MVSA of the concatenated data set was not obtained when either polar

49 MVSA of concatenated data sets provides results that are intuiti

50 Using a seven-gene concatenated dataset (nuclear EF2, LSU and SSU rRNAs, mi

51 d Bayesian inference (BI) methods based on a concatenated dataset of plastid-encoded rpoB, rpoC1 and

52 neral limited in size, most existing methods concatenate datasets from multiple studies to form one a

53 tion of time with features characteristic of concatenated DDMs and that this population signal can be

54 Protelomerase resolves a concatenated dimer of chromosomes as the last step of ch

55 ng perylene bisimide macrocyclic dimer and a concatenated dimer-dimer ring from dynamic self-assembly

56 haviors of both the monocyclic dimer and the concatenated dimer-dimer ring were modeled with the NWCh

57 Importantly, IP3R channels formed from concatenated dimers were fully functional as indicated b

58 henotype, and that recombination between the concatenated DNA and endogenous DNA was a gene replaceme

59 The concatenated DNA fragments of defined length, orientatio

60 ng construction of a core phylogeny based on concatenated DNA sequences.

61 The valve, which is made from seven concatenated DNA strands, can bind a specific ligand and

62 ic analyses were performed to assess whether concatenated enzyme methods can cluster closely related

63 d peptide region is repeated four times in a concatenate fashion within the protein.

64 pectra which are then combined into a single concatenated file and submitted for peptide identificati

65 n2 and lin4, monocyclic complement cyc2, and concatenated foldable rings cat4.

66 Linear, cyclic, and concatenated foldamers reveal that photoabsorption and e

67 In the 3D protocol, six concatenated fractions from the first dimension (C18, he

68 rotocol used a high pH-low pH scheme with 21 concatenated fractions.

69 RF1a fragment (940 nucleotides) and a 4.2 kb concatenated fragment were very similar to the MERS-CoV

70 Concatenated GABA+ micronetworks of AC --> AC and AC -->

71 ase (Fluc) under the regulatory control of a concatenated Gal4 promoter (Tg(G4F(+/-))).

72 Concatenated gene constructs were used to express precis

73 ian analysis can be excessively liberal when concatenated gene sequences are used, whereas bootstrap

74 o 16.8 Mb and inferred topologies using both concatenated gene tree approaches and species tree metho

75 pecies tree whose mode is congruent with the concatenated gene tree but can do so with less than half

76 Multimeric concatenates generated during this process are more sabl

77 ts consisting of single or a small number of concatenated genes have a significant probability of sup

78 contrast, analyses of the entire data set of concatenated genes yielded a single, fully resolved spec

79 haplotype segments into smaller segments, or concatenate haplotype segments if the concatenated haplo

80 ts, or concatenate haplotype segments if the concatenated haplotype segments are sufficiently support

81 le) dimensions, and have not been applied to concatenated helices with more than two segments.

82 Analyses of concatenated hemocyanin sequences resolved deep nodes in

83 631C), the presence of a single subunit in a concatenated hERG1 tetramer disrupted gating to the same

84 on gating and potency of channel block using concatenated hERG1 tetramers containing a variable numbe

85 Concatenated hERG1 tetramers containing four wild-type s

86 bution of individual subtypes within defined concatenated heterotetramers to the shaping of Ca(2+) si

87 robing the mechanisms of channel gating with concatenated heterotypic channels should be interpreted

88 , by comparing the biophysical properties of concatenated hexameric and tetrameric human Orai1 channe

89 ly, a simulated complete digest of 110 Mb of concatenated human sequence was used to create datasets

90 lar region of human JAM1 (hJAM1) reveals two concatenated Ig-type domains with a pronounced bend at t

91 le budding profile in 5-20 ms and from three concatenated ILVs in 80-200 ms.

92 full-length HIV-1 Gag/Pol/Env immunogens or concatenated immunogens consisting of only highly conser

93 ertip, physical features in the stimulus are concatenated in a particular order.

94 The 100 chromatograms were concatenated in a vector.

95 ll Pumby, for Pumilio-based assembly) can be concatenated in chains of varying composition and length

96 We conclude that cohesin rings concatenate individual sister minichromosome DNA molecul

97 Concatenated inhibitions may represent exceptionally sta

98 e is known about how individual elements are concatenated into a behavioral sequence at the neural le

99 , sequences comprising informative SNPs were concatenated into a single combined data matrix and subj

100 a given length (e.g. 12mer and 16mer) may be concatenated into longer sequences (e.g. four tandem wor

101 To address this question, we created concatenated IP3R linked by short flexible linkers.

102 owever, the activity of channels formed from concatenated IP3R1 and IP3R2 heterodimers was dominated

103 A metabolomic approach employing concatenated LC-MS and NMR data was utilised for the fir

104 Calculation of the nucleotide divergence of concatenated locus sequences within and between MLST clu

105 rom genome sequences and using different (or concatenated) locus regions.

106 lucose oxidase) operating in concert as four concatenated logic gates (AND/OR), was designed to proce

107 ies of the clade, based on sequences of four concatenated low-copy nuclear loci.

108 e method, phylogenies are reconstructed from concatenated mammalian intronic genomes; the FFP derived

109 Congruence of this tree with that for concatenated mitochondrial proteins suggests that the ro

110 A comparison of the concatenated ML tree and the primary concordance (BUCKy)

111 Concatenated motifs translocate slower than the motifs a

112 VWF is a concatenated, multifunctional protein that has binding s

113 responsive shape-controlled frameworks from concatenated multiple helices (multihelices) with contro

114 evertheless, we close with an exploration of concatenating multiple elastic gridshell building blocks

115 ment of "domino" processes: those capable of concatenating multiple transformations into a single ste

116 Kinetoplast DNA (kDNA) is organized into a concatenated network of mini and maxicircles, positioned

117 We have concatenated new high-resolution solution structures of

118 Phylogenetic analyses of three concatenated nucleotide datasets using maximum likelihoo

119 Concatenated Orai1 constructs with four MutA monomers ex

120 i1 monomer along with different preassembled concatenated Orai1 constructs, we recently demonstrated

121 Analysis of complete genome sequences or concatenated ORF1/ORF2 amino acid sequences indicated th

122 es constructed from 16S rRNA gene sequences, concatenated orthologous proteins, and the core gene set

123 t route featuring dicyclizations to form 2,4-concatenated oxazoles and the mild synthesis of thiazole

124 ening of a phage expression library with the concatenated palindrome 2 as probe detected a distinct c

125 Functional expression in Xenopus oocytes of concatenated pentameric (alpha7)5-, (alpha7)4(beta2)1-,

126 Expression of concatenated pentameric constructs with this stoichiomet

127 at the glycans were able to be isolated from concatenate peptides by using hydrazide beads.

128 recombinant proteins or synthetic peptides, concatenated peptides (QconCATs) were introduced as a co

129 l possible candidates were investigated, and concatenated polyproteins based on recombinantly express

130 A of all of the negative ion spectra and the concatenated positive and negative ion spectra showed a

131 We also present a two-level, concatenated procedure to improve the readout by use of

132 nonsynonymous SNPs, 121 intergenic SNPs, and concatenated profiles of 578 SNPs available for a subset

133 , we compiled a large data set composed of 7 concatenated protein sequences and performed comprehensi

134 lpC gene as well as phylogenomic analyses of concatenated protein sequences demonstrated that chrysop

135 More recent studies using concatenated protein sequences have increased the data p

136 sister, including genome-scale alignments of concatenated protein sequences, as well as a genomic gen

137 In phylogenetic trees of concatenated protein sequences, SIVdeb, SIVsyk, and SIVg

138 ificant effect of purifying selection in the concatenated protein-coding genes in domestic Bactrian c

139 The estimated dN/dS < 1 in the concatenated protein-coding genes suggested purifying se

140 For example, by mechanically unfolding concatenated proteins at different velocities, a dynamic

141 Moreover, concatenated PrxIII C168S reverts to single toroids on c

142 ut of batch BLASTN searches by multiplexing (concatenating) query sequences and thereby reducing the

143 We find that the concatenated RBEs can facilitate the cytoplasmic transpo

144 m These properties recapitulate those of non-concatenated receptors expressed from a cRNA ratio of 1:

145 artificial reference chromosome composed of concatenated reference sequences, the "concatesome," as

146 gruent with the phylogeny reconstructed from concatenated ribosomal protein genes.

147 f the conserved regions of DdRp subunits and concatenated ribosomal proteins and might represent the

148 isms, which lead to the formation of complex concatenated rings.

149 then reports the English translation of all concatenated rules instantiated to reach that conclusion

150 ore the fact that different positions in the concatenated sequence came from different genes.

151 ents, followed by a second assembly of these concatenated sequences into large circular DNA.

152 to-female mutation rate ratio estimated from concatenated sequences of five perissodactyl introns was

153 Phylogenetic analysis of concatenated sequences of the eight loci indicated two d

154 The study demonstrates that the concatenated sequences of the housekeeping genes of B. b

155 otypeable pneumococci on a tree based on the concatenated sequences of the MLST loci but which had ST

156 However, a tree based on the concatenated sequences of the MLST loci in most cases un

157 The allelic profiles and/or concatenated sequences of the three genes agreed with mu

158 In contrast, concatenated sequences of two groups of mitochondrial ge

159 s of the maximum likelihood (ML) tree of the concatenated sequences with individual gene trees showed

160 llelic profiles, phylogenetic trees based on concatenated sequences, and a recently developed method

161 mate is obtained by using distances based on concatenated sequences.

162 , we have compared a phylogenetic tree for a concatenated set of 50 widespread ribosomal proteins wit

163 roEL(SR)-GroES interaction systematically by concatenating seven copies of groES to generate groES(7)

164 describe an efficient sequential method for concatenating short sequence tags for any serial analysi

165 ruct a robust phylogeny of VARV by analyzing concatenated single nucleotide polymorphisms (SNPs) from

166 were significantly longer than predicted by concatenating states from the model.

167 a 42-base strand of DNA composed entirely of concatenated sticky ends and that binds to four local ne

168 The large number (5000-10,000) and their concatenated structure make them difficult to sequence.

169 rmed from other surrogate alpha6 subunits or concatenated subunits and studies of other heteromeric n

170 or that, we used receptors formed of mutated concatenated subunits to selectively eliminate one of th

171 as participants listened to three streams of concatenated syllables, containing either statistical re

172 Here, we employ a recently developed concatenated tandem array of consensus TF response eleme

173 atabase search strategy are reasonable; (ii) concatenated target-decoy database searches are preferab

174 roughput of SMS platforms by generating long concatenated templates from pools of short DNA molecules

175 on of the number of mutant subunits within a concatenated tetramer as predicted by a sequential model

176 companying dramatic changes in colors, but a concatenated tetramer displays a multicolored composite

177 ontrast, a single wild-type subunit within a concatenated tetramer was sufficient to achieve half of

178 The perylene cyclic dimer and its concatenated tetramer were characterized using both stru

179 activities for the monocyclic dimer and the concatenated tetramer.

180 f the number of mutant subunits present in a concatenated tetramer.

181 er of wild-type subunits incorporated into a concatenated tetrameric channel, and four wild-type subu

182 ere combined with wild-type subunits to form concatenated tetrameric channels with defined subunit co

183 amic mutant cycle analysis by constructing a concatenated tetrameric KCNQ1 channel and by introducing

184 by characterizing the kinetic properties of concatenated tetramers containing a variable number of w

185 rozygous situation, we generated a series of concatenated tetramers of Orai1 that included different

186 subunits regardless of their positioning in concatenated tetramers.

187 ing multiple genes from the same taxon is to concatenate the sequences and then ignore the fact that

188 We concatenated the subjects (n = 3) in each category and c

189 Concatenating the latter peak pairs, called candidate su

190 e, a 'genetic domain' sequence is created by concatenating the sequences of each chain in the order f

191 is now represented by a feature vector from concatenating the vectors of the two corresponding resid

192 Furthermore, we concatenate these predicted loops into one sequence rath

193 d in miRBase, text documents were created by concatenating titles and abstracts of MEDLINE citations

194 Separately, RXP-E was concatenated to a cytoplasmic transduction peptide (CTP)

195 ucleotide where the same AT-rich sequence is concatenated to a GC-rich sequence known to undergo a B-

196 alpha4, beta2, and delta subunits were concatenated to dimeric, trimeric, and, in some cases, p

197 series of overlapping 3-D images, which were concatenated to form a single 3-D mosaic (pixel resoluti

198 aper, we report the first MVSA analysis of a concatenated TOF-SIMS data set comprising positive ion a

199 Multiple duplicons are concatenated together to form larger blocks of wall-to-w

200 rimming and demultiplexing, whereas with the concatenate tool multiple IMGT/HighV-QUEST output files

201 nal ImMunoGeneTics information system (IMGT) concatenate tool, the immune repertoire pipeline, and th

202 starting point, a "double-LBT" (dLBT), which concatenates two lanthanide-binding motifs, was designed

203 n developmental enhancers, we experimentally concatenated up to four enhancers from different genes a

204 One set of amplicons was concatenated using overlap extension PCR.

205 et and two of its repeated homologues in the concatenated vector.

206 ing membrane, plant ILVs form as networks of concatenated vesicle buds by a novel vesiculation mechan

207 cleotide XY, both computed from the sequence concatenated with its inverted complement).

208 cleotide XY, both computed from the sequence concatenated with its inverted complementary sequence.)

209 This Split LexA system can be concatenated with the Gal4/upstream activating sequence

210 ides that are common for all isoforms of APP concatenated with those tryptic peptides that are unique

211 OSCATs combine a series of epitope sequences concatenated with tryptic peptides in a single artificia

212 in by a sequence of rigid fragments that are concatenated without any degrees of freedom.