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1 -generation sequencing in conjunction with a consensus sequence.
2 and an oligonucleotide complementary to the consensus sequence.
3 number of reads required to make a template consensus sequence.
4 tical to the modern North American subtype B consensus sequence.
5 omain of FOXM1 that inhibit binding to a FKH consensus sequence.
6 gulate target genes containing the CCAAT box consensus sequence.
7 l dsRNA duplex containing an OAS1 activation consensus sequence.
8 CRP(Mt) binding overlapped a palindromic consensus sequence.
9 lerant recognition of other positions of the consensus sequence.
10 own TE families each represented by a single consensus sequence.
11 e O-glycosylation site is not within a known consensus sequence.
12 importance of the conserved bases within the consensus sequence.
13 of DNA, confirming Foxo1 recruitment to this consensus sequence.
14 EGF) repeats harboring the C(1)-X-S-X-P-C(2) consensus sequence.
15 ds glucose to EGF repeats with a C-X-S-X-P-C consensus sequence.
16 collagen residues 784-792 C-terminal to the consensus sequence.
17 typical Streptomyces vegetative sigma factor consensus sequence.
18 ind individual modules within a compound DNA consensus sequence.
19 length requirements and its phosphorylation consensus sequence.
20 r of ZF3-7 contacts three bases of the 15-bp consensus sequence.
21 scanning by Miz-1 during the search for its consensus sequence.
22 ome, and the sequence data generally yield a consensus sequence.
23 p53 binding site deviates from the canonical consensus sequence.
24 signals surrounding the exon to better match consensus sequences.
25 lecule and allows for efficient formation of consensus sequences.
26 in vivo often bind DNA regions lacking known consensus sequences.
27 alternative splicing through binding to RNA consensus sequences.
28 human inherited disease disrupt splice-site consensus sequences.
29 moter mutations that create or disrupt GABPA consensus sequences.
30 and a bioinformatics pipeline for generating consensus sequences.
33 depurination of the 5' G residue of the loop consensus sequence 5'-G(T/A)GG-3' probably involves form
36 binds to over 500 operator regions with the consensus sequence 5'-TGGCSNGWWY-3' (where S is G or C,
42 eractions compensate for deviations from the consensus sequence, allowing CTCF to adapt to sequence v
44 aps in scaffolds, correct base errors in the consensus sequence and exploit reference genomes (if ava
45 ch of which matches the 5' end of the toxbox consensus sequence and is a potential binding site for T
46 e find that L. waltii origins exhibit a core consensus sequence and nucleosome occupancy pattern high
47 role of Miz-1 ZFs 1-4 in detecting the Miz-1 consensus sequence and preventing nonspecific DNA bindin
48 pha)-responsive genes also have the CD44-ICD consensus sequence and respond to CD44-ICD induction und
49 ural DNA sequences conforming to the class I consensus sequence and structure were found that undergo
50 9CA-CFTR, mutants that lack 15 PKA or 9 PKC consensus sequences and are unresponsive to PKA or PKC s
52 ommon secondary structure motif but distinct consensus sequences and positions within the respective
53 ferase reporter assays was dependent on Smad consensus sequences and was partially dependent on endog
55 T387 lies in a cyclin-dependent kinase (CDK) consensus sequence, and CDK inhibitors decrease T387 pho
56 amino acid composition of the glycosylation consensus sequence, and cellular localization of target
57 directs the N-lobe to a site upstream of the consensus sequence, and it appears that the N-lobe must
59 t for O-glucose transfer, confirming the new consensus sequence, and that positively charged residues
60 aty-1 elements identical to their respective consensus sequence, and the presence of polymorphic elem
61 collagen residues 763-768 N-terminal to the consensus sequence, and the third inserted alpha1(II) co
62 s, finding pairs of binding sites based on a consensus sequence, and, in some cases, identifying endo
63 ragment that contains two strong Gli-binding consensus sequences, and mutation of either site abrogat
64 ors recognize the same response element (RE) consensus sequences, and their transactivation of target
65 f AP-1 reporters occurred in a ligand-, AP-1 consensus sequence-, and AP-1 family member-specific man
68 i-partite nature of the ICP4 DNA recognition consensus sequence as the globular and disordered region
69 DNA binding domain complexed to the putative consensus sequence as well as an adjoining secondary seq
70 dress this, we developed a new single-strand consensus sequencing assay for the determination of HIV
72 ignificantly better than those harboring the consensus sequence at this site, resulting in reduced re
73 lution that could be readily performed using consensus sequences available for other satellite famili
74 at IRF8 is recruited to distinct sets of DNA consensus sequences before and after lipopolysaccharide
75 In this study, we found that the interferon consensus sequence binding protein (Icsbp/Irf8) was requ
76 ry factor 8 (IRF8), also known as interferon consensus sequence-binding protein, directly targets a l
77 ns and nodule organogenesis, we determined a consensus sequence bound in vitro by a transcription fac
78 Tyr126, which is part of the choline-binding consensus sequence but is found in direct contact with t
79 mediate transcriptional repression via Insv consensus sequences but that the ELBA complex appears to
80 domains usually interact with a proline-rich consensus sequence, but the region of paramyosin that in
81 r element (T(-12)A(-11)T(-10)A(-9)A(-8)T(-7) consensus sequence) by the RNA polymerase sigma subunit.
84 ed that 9 of 12 TSRs with the O-fucosylation consensus sequence carried the Glucosebeta1-3Fucose disa
85 , CUG-binding-protein-1 (CUGBP1), bound to a consensus sequence close to the Bcl-x(L) 5' splice site,
86 activate the eight variants of the 7-bp SMRE consensus sequence, composed of ACC(A/T)A(A/C)(T/C).
87 the clonal H77C genome toward a genotype 1a consensus sequence considered most fit for replication w
88 The method reproducibly generated the same consensus sequence, consistently identified viral sequen
89 hat specifically recognizes an 11-nucleotide consensus sequence consisting of two motifs in the promo
91 binding segments and the dynein light chain consensus sequences could also provide an attractive rec
93 he active site of Dtrx contains a particular consensus sequence, CPHC, never seen in the cytoplasmic
96 nts are predicted by realigning an assembled consensus sequence created from sequence reads that were
98 ating enzyme (FGE) recognizes a pentapeptide consensus sequence, CxPxR, and it specifically oxidizes
100 antibodies also recognizes the pentapeptide consensus sequence D/E W D/E Y S/G (DWEYS) present in th
101 obacter jejuni favors acceptor proteins with consensus sequences ((D/E)X1NX2(S/T), where X1,2 not equ
102 upstream of sco3205 and a pseudopalindromic consensus sequence derived from these enables further po
103 omologies revealed threonine at this site in consensus sequences derived from multiple-species alignm
104 of accumulation of mutations in the genomic consensus sequence deviated slightly from linearity, and
106 c function RNA polymerase sigma factor RpoE2 consensus sequences displayed a sharp peak between -34 a
108 the AUG to improve their match to the Kozak consensus sequence enhanced Vhs cutting near the start c
109 ster than the existing pipelines, though the consensus sequence error rate is as high as raw reads.
111 two arginine residues directly recognize the consensus sequence, explaining the strict recognition of
115 articularly, this mutation is located in the consensus sequence for beta-adrenergic-activated protein
116 of CAMTA1-mutant mice, and elucidation of a consensus sequence for binding of CAMTA proteins to DNA
119 equences are then used to create an accurate consensus sequence for each template, correcting for rec
121 an intrinsic RNase activity and a potential consensus sequence for endonucleolytic cleavage identifi
123 o that of peptides, and the requirement of a consensus sequence for N-glycosylation further limits th
125 lerated within the stem-loop-forming genomic consensus sequence for self-catalyzed site-specific depu
126 ed genes in the sigH regulon with a putative consensus sequence for SigH binding that was recognized
127 the major start site P1 is dependent upon a consensus sequence for the housekeeping sigma factor Sig
128 transcribed from promoters containing a new consensus sequence for the human initiator (Inr) core pr
129 recognize several DNA substrates without the consensus sequence for YY1 in vitro, and DNA binding is
131 As seemed to be replicated and 80% contained consensus sequences for autonomous replication origins t
135 genome were sufficient to provide functional consensus sequences for the THAP domains, they do not sp
136 ng multiple copies of an hnRNP K RNA-binding consensus sequence found within these transcripts largel
138 g; however, user-friendly software for build consensus sequences from molecule tagged reads is not re
140 t associated with decreased infectivity, and consensus sequencing from tissues revealed no evidence o
141 e (GAG/GTTTGT), which when strengthened to a consensus sequence (GAG/GTAAGT) leads to near-total exon
142 cted by merging homologous loci into single "consensus" sequences, generally absent from nature.
146 ing a variety of ligands, two different AP-1 consensus sequences, GR and MR DNA-binding domain mutant
149 erved within the first nuclear export signal consensus sequence identified in Saccharomyces cerevisia
150 mpensate to some extent for changes from the consensus sequence, implying an adaptability of PRDM9 to
151 cific promoter region featuring an NF-kappaB consensus sequence in a relevant subset of K17- and Aire
152 ly shifted from the previously reported CtrA consensus sequence in Caulobacter crescentus Bacterial o
156 e-like CD8(+) T cells from patients with the consensus sequence in the corresponding T-cell epitope d
158 nucleus, where it then binds to a novel DNA consensus sequence in the promoter region of the MMP-9 g
159 n the human genome, with deviations from the consensus sequence in the spacing, orientation, and exte
160 g to a putative antioxidant response element consensus sequence in the sterol regulatory-element bind
161 e report the role of a newly identified AP-1 consensus sequence in the TF gene promoter and its origi
162 mediated increased binding of Sp1 to the Sp1 consensus sequence in the Wnt9A promoter, shown by oligo
164 adds Glucosebeta1-3Fucose disaccharide to a consensus sequence in thrombospondin type 1 repeats (TSR
165 e the role(s) of individual cysteines of the consensus sequence in various properties of Env7 in vivo
171 CTAAAGAGAACTTA-3', containing a pair of SinR consensus sequences in inverted orientation with a K(d)
174 BPC1 binds to guanine and adenine (GA)-rich consensus sequences in the seedstick (STK) promoter in v
177 reviously described LXVP calcineurin-binding consensus sequence, increased the calcium-sensitivity of
179 uences such as 3'-TCC, TTC, and TTT, and the consensus sequence is 3'-Pu(Py)2-3 Based on our studies,
182 However, we show here that the palindromic consensus sequence is not present in individual integrat
184 d variants of the aptamers revealed that the consensus sequence is responsible and sufficient for bin
187 pes with predicted tight binding to the MHC, consensus sequence (most common amino acid at each posit
190 ivergent PARP homology domain missing a PARP consensus sequence motif; the domain has enigmatic funct
193 1 brain promoter (ncx1-Br) has five putative consensus sequences, named Sp1A-E, for the specificity p
195 l internal amino acid block repeats with the consensus sequence NVNVN embedded in a glycine-rich matr
197 e hypermutation, the new antibodies shared a consensus sequence of 68 immunoglobulin H (IgH) chain am
198 ced is computationally processed to obtain a consensus sequence of all linked copies of the original
199 )), an amyloid-like peptide extracted from a consensus sequence of amyloidogenic proteins, which asse
200 the cleavage specificity of SBT4.13 and the consensus sequence of Arabidopsis SBTs at the junction o
201 the phosphothreonine residue of the pT-X-pY consensus sequence of ERK and p38 into Dhb and followed
202 ect repeats separated by 13 bp, based on the consensus sequence of FsrA, T/AT/CAA/GGGAA/G, which is c
204 ine the genetic differences responsible, the consensus sequence of L10 was determined and compared to
208 ing penguin AvBD103b defensin structure, the consensus sequence of the avian beta-defensin family was
209 tein gene with a low-fusion RSV subgroup B F consensus sequence of the Buenos Aires clade (BAF).
210 ed samples had a 12 nucleotide insert in the consensus sequence of the spike gene, and multiple point
212 or ToxR-dependent toxT activation revealed a consensus sequence of TNAAA-N(5)-TNAAA extending from -9
213 ovariance and fall into two classes with the consensus sequences of (D/E)EPIYvarphiXvarphi and (D/E)(
214 , while no heterogeneity was observed in the consensus sequences of additional genomic RNA segments.
215 The effect of mutations to or away from the consensus sequences of ARs on folding behavior was analy
216 s, but their sequences are inconsistent with consensus sequences of known HEAT modules, suggesting th
217 at which there were differences between the consensus sequences of the 2 linked viral genomes, 9 had
219 ull viral genome sequencing showed identical consensus sequences of the virus before and after cell c
220 Sporadic mutations were detected in the consensus sequences of the viruses after high-MOI passag
223 Although a number of pooling strategies for consensus sequencing of DNA samples and detection of SNP
224 t augmented binding on cAMP response element consensus sequence on peroxisome proliferator-activated
225 ubstrates, either recognizing the C-terminal consensus sequence or binding unfolded OMP intermediates
226 NA immunization with either a single HIV Env consensus sequence or multiple constructs expressing HIV
227 trains than did T cells expanded with either consensus sequence or naturally occurring sequence varia
228 er alignments that displays motifs, as IUPAC consensus sequences or position frequency matrices, in t
230 utating BDF2 5' splice site and branch point consensus sequences partially suppresses the bdf1Delta t
232 ctor U2AF(65) normally recognizes a Py tract consensus sequence preceding the major class of 3' splic
233 ized, on the basis of an Akt phosphorylation consensus sequence present in HK-II, that Thr-473 is the
235 In toto, the more complete definition of the consensus sequence provided by this investigation enable
236 a strain-DBN coding sequence, modified NS5B consensus sequence, pS52 untranslated regions, and codin
237 our data show that the previously described consensus sequence PXRPXR for amphiphysin SH3 ligands is
239 ncy, we find a highly enriched messenger RNA consensus sequence, R-motif, consisting of mostly purine
240 tively charged residues within the O-glucose consensus sequence reduce efficiency of glycosylation by
243 uence logos, and agreement with existing NES consensus sequences revealed strong preferences for the
244 reads derived from at least 7 full circular consensus sequencing rounds significantly reduced the in
246 nown about influenza evolution has come from consensus sequences sampled at the epidemiological scale
247 am produces a 2.9% increase in coverage over consensus sequence search methods on a large human bench
250 opy studies and binding studies with mutated consensus sequences showed that the sequence was importa
251 sus program was used to automatically derive consensus sequences starting from sequence alignments of
253 A that extends beyond the proposed canonical consensus sequence suggesting a more complex level of re
254 ock wild-type MYOD1 function and bind to MYC consensus sequences, suggesting a possible switch from d
255 ate strand bases of a conserved -10 element (consensus sequence T-12A-11T-10A-9A-8T-7) is an importan
256 5-46(G54W) arising from mutations in a gp120 consensus sequence, targets a common route of HIV-1 esca
258 en access a site 40 residues distal from the consensus sequence that collectively direct phosphorylat
259 Point centromeres are specified by a short consensus sequence that seeds kinetochore formation, whe
260 species of Drosophila, we discovered a 29-bp consensus sequence that we designated as the Clock-Assoc
261 biosensors for diverse ligands and determine consensus sequences that enable ligand-responsive tertia
262 The repeat was reconstructed into three consensus sequences that formed three interconnected loo
263 d dual-promoter (RpoH1- and RpoH2-dependent) consensus sequences that were each used to search the ge
265 pparent affinity of SOX2 and NANOG for their consensus sequences to be 54.2+/-9 and 44.0+/-6nM, respe
266 , and its promoter contains all the putative consensus sequences typical of eukaryotic promoters, bei
267 onserved heptapeptide repeats containing the consensus sequence Tyr1-Ser2-Pro3-Thr4-Ser5-Pro6-Ser7.
268 ed that MazF-cd cleaved RNA at the five-base consensus sequence UACAU, suggesting that the mRNAs susc
269 describe valuable data that are missing from consensus sequences, variable effects on sequence data g
270 r domain, and we characterize its tripartite consensus sequence via SELEX (systematic evolution of li
271 th high specificity and affinity to the WRKY consensus sequence (W-box), and also to its own promoter
273 d on deriving physicochemical property (PCP)-consensus sequences, was tested for its ability to gener
274 nstructs expressing HIV subtype-specific Env consensus sequences, we detected both CD4(+) and CD8(+)
275 , Miz1-4(WT) was found to bind the Miz-1 DNA consensus sequence weakly and through ZFs 1-3 only.
278 ACE-PCR), and strong sigma(54) and sigma(70) consensus sequences were identified at PampR and PampC,
281 (strains DH8 and DH10), and 2c (strain S83) consensus sequences, were viable in Huh7.5 hepatoma cell
283 to the secondary wall MYB-responsive element consensus sequence, which encompasses the AC elements, t
284 s resulted in the identification of a G-rich consensus sequence, which was able to fold in a typical
285 ified and validated a putative RpoE promoter consensus sequence, which was enriched in the majority o
286 ine phosphorylation within the RNP1 and RNP2 consensus sequences, which coordinate RNA binding - sugg
287 in of latent transcript of CyHV-3 contains a consensus sequence with homology to a conserved domain o
288 The hypothetical protein of ORF6 contains a consensus sequence with homology to a conserved domain o
289 , E6 binds to a short leucine (L)-rich LxxLL consensus sequence within the cellular ubiquitin ligase
292 ral native glycoproteins are known to harbor consensus sequences within structured regions of the acc
293 that 6 of the genes contained HP1043 binding consensus sequences within the promoter regions (fur, ca
294 identified a novel conserved region with the consensus sequence WWxxRxxLD predicted to be exposed on
295 al structure formed by tandem repeats of the consensus sequence Xaa-Yaa-Gly, in which Xaa and Yaa fre
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