ライフサイエンスコーパス: controlled vocabulary

1 equence records then map these metadata to a controlled vocabulary.

2 eference the Medical Subject Headings (MeSH) controlled vocabulary.

3 rocess following a set of best practices and controlled vocabulary.

4 annotating gene expression patterns using a controlled vocabulary.

5 t takes advantage of improved ontologies and controlled vocabularies.

6 d data annotation associated with terms from controlled vocabularies.

7 more accessible by the use of ontologies or controlled vocabularies.

8 ng the detailed annotation with hierarchical controlled vocabularies.

9 creasing number of biomedical ontologies and controlled vocabularies.

10 ific publications and makes extensive use of controlled vocabularies.

11 using standardized computational methods and controlled vocabularies.

12 e for populating data fields with terms from controlled vocabularies.

13 ions, but they require clinically expressive controlled vocabularies.

14 cribe a methodology for rapid development of controlled vocabularies, a study originally motivated by

15 pment of a text mining tool for expansion of controlled vocabularies across various domains, as a pra

16 The controlled vocabulary, algorithms, and software applicat

17 ustom built, interconnected and hierarchical controlled vocabulary allowing advanced data sharing and

18 s of MTB are enabled through use of multiple controlled vocabularies and by adherence to standardized

19 e Ontology (GO) project provides structured, controlled vocabularies and classifications that cover s

20 Recently, several ontologies, controlled vocabularies and databases have been develope

21 re data from the scientific literature using controlled vocabularies and free text within the context

22 al annotation, based on standard ontologies, controlled vocabularies and free text.

23 e Gene Ontology project produces structured, controlled vocabularies and gene product annotations.

24 curated; interactions are constructed using controlled vocabularies and hierarchies; additional gene

25 the components of the models with terms from controlled vocabularies and links to other relevant data

26 r the biomedical domain, actively publishing controlled vocabularies and making data available in Res

27 ces such as database records, and terms from controlled vocabularies and ontologies.

28 ence, genes, genetic markers, mutants, QTLs, controlled vocabularies and publications.

29 oming changes to database contents, formats, controlled vocabularies and services are described.

30 here is an effort to narrow the gap between controlled vocabularies and the entities used in text.

31 al implementation of database structures for controlled vocabularies and the integration of a phenoty

32 ty across data sets requires annotation with controlled vocabularies and, further, metadata standards

33 ancer patterns are annotated manually with a controlled vocabulary and all results are available thro

34 The controlled vocabulary and equations were integrated into

35 until March 16, 2017, using a combination of controlled vocabulary and keyword terms.

36 al annotations of Arabidopsis genes that use controlled vocabulary and literature evidence.

37 nd classification-driven procedures based on controlled vocabulary and standard nomenclature and incl

38 ally annotating genes and gene products with controlled vocabularies, and improving data retrieval, a

39 here are a bewildering number of ontologies, controlled vocabularies, and minimum standards available

40 All IntAct software, data and controlled vocabularies are available at http://www.ebi.

41 Controlled vocabularies are increasingly used by databas

42 A controlled vocabulary consisting of nine high-level phen

43 The Gene Ontology (GO) is a controlled vocabulary designed to represent the biologic

44 r process, function and localization using a controlled vocabulary developed in collaboration with tw

45 The Gene Ontology (GO) is a structured controlled vocabulary developed to describe the roles an

46 Enterprise Vocabulary Services (EVS) provide controlled vocabulary, dictionary and thesaurus services

47 Because existing controlled vocabularies do not represent problem stateme

48 ecies, and the development and use of shared controlled vocabularies extend GXD's utility for the ana

49 onsistent terminology pertaining to shape, a controlled vocabulary focusing specifically on fruit sha

50 icroarray and gene expression repository and controlled vocabularies for anatomy and insecticide resi

51 Controlled vocabularies for gene and plant ontologies, a

52 SoyBase is the repository for controlled vocabularies for soybean growth, development

53 nd gene attributes (GO terms), together with controlled vocabularies for type of genetic manipulation

54 Gene Ontology (GO) Consortium has produced a controlled vocabulary for annotation of gene function th

55 ings, and the National Library of Medicine's controlled vocabulary for biomedical concepts.

56 y has been developed to provide a structured controlled vocabulary for features on a protein sequence

57 Medical Subject Headings (MeSH((R))) is a controlled vocabulary for indexing and searching biomedi

58 The Gene Ontology is a controlled vocabulary for representing knowledge related

59 also provide an interface with an extensible controlled vocabulary for research groups to submit new

60 We present case studies involving two controlled vocabularies (for nuclear magnetic resonance

61 ds in Organelle DB have been annotated using controlled vocabulary from the Gene Ontology consortium.

62 eroperability, we have annotated genes using controlled vocabularies (Gene Ontology terms, Enzyme Com

63 gene set function most commonly makes use of controlled vocabulary in the form of ontology annotation

64 The use of ontologies (or controlled vocabularies) is ubiquitous across the schema

65 on are integrated by anatomical terms from a controlled vocabulary linking together intermediate tiss

66 (i) an anatomical dictionary that provides a controlled vocabulary of anatomical terms, grouped by de

67 It also includes a sample controlled vocabulary of drugs, herbs and adverse effect

68 tically classifies protein kinases using the controlled vocabulary of Hanks and Hunter.

69 A search algorithm using controlled vocabulary of the respective databases (where

70 literature by professional biocurators using controlled vocabularies, ontologies and structured notat

71 The data model is based on controlled vocabularies/ontologies and captures the whol

72 create, maintain and facilitate the use of a controlled vocabulary (ontology) for plants.

73 tion of multiple bodies of data using common controlled vocabularies or 'ontologies'.

74 Many bioinformatics applications rely on controlled vocabularies or ontologies to consistently in

75 al properties, precomputed BLAST alignments, controlled-vocabulary protein properties and Gene Ontolo

76 rowse and navigate biomedical ontologies and controlled vocabularies since it first went into product

77 The annotation of biomedical texts using controlled vocabularies such as MeSH can be automated to

78 The need to create controlled vocabularies such as ontologies for knowledge

79 Controlled vocabularies such as the Medical Subject Head

80 Controlled vocabularies such as the Unified Medical Lang

81 Base, using our TermLink tool to search with Controlled Vocabulary terms and our new RNA-Seq Search t

82 Here, we combined the use of controlled vocabulary terms and sequence-based algorithm

83 We focus on associating genes to controlled vocabulary terms based on experimental data f

84 the number of protein sequence entries with controlled vocabulary terms describing function (e.g. th

85 gene function and expression patterns using controlled vocabulary terms, and maintains and updates t

86 ProtDB include gene name, symbol and various controlled vocabulary terms, including Gene Ontology ter

87 abitat and temperature, and are based on the controlled vocabularies that NCBI's Microbial Genome Pro

88 We introduced an extensive controlled vocabulary that records specific details on t

89 ome displays, Gramene makes extensive use of controlled vocabularies to describe specific biological

90 the Swiss-Prot team, making intensive use of controlled vocabularies to ensure data consistency.

91 troduce readers to the Gene Ontology (GO), a controlled vocabulary to facilitate comparative genomics

92 annotations, and for annotation terms from a controlled vocabulary used by human curators to describe

93 e Gene Ontology vocabulary, a structured and controlled vocabulary used in classification of gene rol

94 n gene products according to well-structured controlled vocabularies where biological terms are organ

95 h over 312 metadata fields from which 58 are controlled vocabularies with 2067 terms.

96 Controlled vocabularies with broad community support typ

97 ition as a way of rapidly expanding a set of controlled vocabularies with the terms used in the scien

98 number and size of resources (e.g. available controlled vocabularies), with the amount of literature