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1 igns four nucleotides upstream of the edited cytidine.
2 lling with the combination of vancomycin and cytidine.
3 in methanol solution is identical to that of cytidine.
4 obtained by the co-addition of either UMP or cytidine.
5 f exogenous CTP or its nucleoside precursor, cytidine.
6 con that had a high content of guanidine and cytidine.
7 ed to methylated and other modified forms of cytidine.
8 synthesized from suitably protected 5'-O-DMT cytidines.
9 ride, and the binding of ribonuclease A with cytidine 2'-monophosphate within reaction volumes of app
12 ficiency include phophoglucomutase 3 (PGM3), cytidine 5' triphosphate synthase 1 (CTPS1), nuclear fac
14 We demonstrated that Q5LIW1 is inhibited by cytidine 5'-monophospho-3-deoxy-D-manno-2-octulosonic ac
15 or cytosine, 1-methylcytosine, cytidine, and cytidine 5'-phosphate, and also for cytosine residues in
16 and microarray data generated on 5-azadeoxy-cytidine (5-Aza) treated HT-29 colon cancer cells with a
17 i are hypersensitive to killing by exogenous cytidine, adenosine, or guanosine, whereas wild-type cel
20 pectral changes and quenching of fluorescent cytidine analogs, we also established a mechanism for th
22 was modest, the triphosphate of a 2'-oxetane cytidine analogue demonstrated potent intrinsic biochemi
23 the design and synthesis of a new tricyclic cytidine analogue, 8-diethylamino-tC (8-DEA-tC), that re
27 cytarabine and various structurally related cytidine analogues, such as 2'deoxycytidine and gemcitab
30 ed with four different C5-functionalized LNA cytidine and C8-functionalized LNA adenosine monomers.
31 e distribution, with a strong preference for cytidine and guanosine, and identified hotspots of ribon
32 n criteria are outlined and the syntheses of cytidine and uridine azo dye analogues derived from 6-am
33 eding 3' splice sites while adapting to both cytidine and uridine nucleotides with nearly equivalent
34 ng some other nucleosides such as guanosine, cytidine and uridine, the excellent specificity of this
36 ytic C-terminal domain (CTD) that deaminates cytidine, and a N-terminal domain (NTD) that binds to ss
37 imilar rates for cytosine, 1-methylcytosine, cytidine, and cytidine 5'-phosphate, and also for cytosi
39 ery of the antimitotic drug arabinofuranosyl cytidine (AraC) blunted food intake, body weight gain, a
45 unction mutants accumulating high amounts of cytidine but also CMP, cytosine, and some uridine in see
46 somatic hypermutation (SHM), deamination of cytidine by activation-induced cytidine deaminase and su
49 e units for healthy volunteers (P = .02) and cytidine concentrations were 1.44 (0.95-1.73) relative u
51 ed to the Igh locus in an activation-induced cytidine deaminase (AID) and H2AX-dependent fashion.
52 Fs ectopically expressing activation-induced cytidine deaminase (AID) and observed an excess of AID s
53 n of DSBs is initiated by activation-induced cytidine deaminase (AID) and requires base excision repa
54 tudies have reported that activation-induced cytidine deaminase (AID) and ten-eleven-translocation (T
70 The antibody gene mutator activation-induced cytidine deaminase (AID) promiscuously damages oncogenes
73 ion (CSR) is initiated by activation-induced cytidine deaminase (AID) that catalyzes numerous DNA cyt
75 ul R loops, we used human activation-induced cytidine deaminase (AID) to identify genes preventing R
76 on-coupled recruitment of activation-induced cytidine deaminase (AID) to Ig switch regions (S regions
77 Likewise, recruitment of activation-induced cytidine deaminase (AID) to S regions is critical for CS
78 on-coupled recruitment of activation-induced cytidine deaminase (AID) to switch regions and by the su
80 ically inactive dCas9 to recruit variants of cytidine deaminase (AID) with MS2-modified sgRNAs, we ca
81 e we report the fusion of activation-induced cytidine deaminase (AID) with nuclease-inactive clustere
82 the C-terminal region of activation-induced cytidine deaminase (AID), 14-3-3gamma targets this enzym
84 the expression levels of activation-induced cytidine deaminase (AID), a key player in B-cell respons
85 The Aicda gene encodes Activation-Induced cytidine Deaminase (AID), an enzyme essential for remode
86 tion (SHM), which require activation-induced cytidine deaminase (AID), and plasma cell differentiatio
87 genes is initiated by the activation-induced cytidine deaminase (AID), and requires target gene trans
88 f that machinery, such as activation-induced cytidine deaminase (AID), as well as factors central to
89 s in AICDA, which encodes activation-induced cytidine deaminase (AID), display an impaired peripheral
90 eration and expression of activation-induced cytidine deaminase (AID), DNA repair enzymes, and post-c
91 ion (CSR) is initiated by activation-induced cytidine deaminase (AID), the activity of which leads to
96 +) B cells stimulated for activation-induced cytidine deaminase (AID)-dependent IgH class switch reco
97 eliberate introduction of activation-induced cytidine deaminase (AID)-instigated DNA double-strand br
104 re, we have proposed that activation-induced cytidine deaminase (AID, encoded by AICDA) links chronic
106 s and identified that L306 in the C-terminal cytidine deaminase (CD) domain contributed to its core l
108 new possibilities for anti-cancer treatment.Cytidine deaminase (CDA) deficiency leads to genome inst
109 m revealed that TAMs induced upregulation of cytidine deaminase (CDA), the enzyme that metabolizes th
110 DNMT1 and tetrahydrouridine (THU) to inhibit cytidine deaminase (CDA), the enzyme that otherwise rapi
113 on of a long isoform of the bacterial enzyme cytidine deaminase (CDDL), seen primarily in Gammaproteo
114 because a single enzyme, activation-induced cytidine deaminase (encoded by Aicda), initiates both re
115 se findings indicate that activation-induced cytidine deaminase acting on V-region sequences is suffi
116 ctors contains residues conserved with known cytidine deaminase active sites; however, some PPR editi
121 d functions in antibody diversification, the cytidine deaminase AID can catalyze off-target DNA damag
122 ription factors and Aicda (which encodes the cytidine deaminase AID) and thus silenced B cell-specifi
123 in B mRNA-editing enzyme complex 1 (APOBEC1) cytidine deaminase and Deadend-1, which are involved in
124 found a synthetic lethal interaction between cytidine deaminase and microtubule-associated protein Ta
125 eamination of cytidine by activation-induced cytidine deaminase and subsequent DNA repair generates m
126 autoreactivity, expresses activation-induced cytidine deaminase and T-bet, and exhibits evidence of s
127 edominant mutation signature associated with cytidine deaminase APOBEC, which correlates with the upr
133 es, uracils introduced by activation-induced cytidine deaminase are processed by uracil-DNA glycosyla
135 nd that conserved catalytic residues in both cytidine deaminase domains are required for RNA editing.
136 e engineered base editors containing mutated cytidine deaminase domains that narrow the width of the
137 We engineered fusions of CRISPR/Cas9 and a cytidine deaminase enzyme that retain the ability to be
139 associated with increased activation-induced cytidine deaminase expression, and correlate with increa
141 eaminase is unique within the zinc-dependent cytidine deaminase family as being allosterically regula
143 polypeptide-like-3 (APOBEC3) innate cellular cytidine deaminase family, particularly APOBEC3F and APO
145 -mediated ablation of the activation-induced cytidine deaminase gene required for class switch recomb
146 pts and to upregulate the activation-induced cytidine deaminase gene through in vitro T-dependent and
149 c antibody showed loss of activation-induced cytidine deaminase mRNA induction in all mutation-bearin
151 report extensive computer simulations of the cytidine deaminase reaction and its temperature dependen
154 downstream effector APOBEC3, an IFN-induced cytidine deaminase that introduces lethal mutations duri
158 ssibilities, we used a chemical inhibitor of cytidine deaminase to stabilize and thereby artificially
159 gs for cancer tissues presenting concomitant cytidine deaminase underexpression and Tau upregulation
160 sent the crystal structure of a complex of a cytidine deaminase with ssDNA bound in the active site a
162 or stromal remodeling and down-regulation of cytidine deaminase without depletion of tumor stromal co
164 the miR-155 target Aicda (activation-induced cytidine deaminase) in this process and, in combination
167 lly defective Streptococcus pyogenes Cas9, a cytidine deaminase, and an inhibitor of base excision re
168 in binds a zinc metal ion, as expected for a cytidine deaminase, and is potentially the catalytic com
169 oliferation, induction of activation-induced cytidine deaminase, and the production of circle and ger
170 V regions, expression of activation-induced cytidine deaminase, clonal H chain switch, and an invert
171 oduction was dependent on activation-induced cytidine deaminase, hematopoietic MyD88 expression, and
173 ed with overexpression of activation-induced cytidine deaminase, the hotspot length increases even fu
174 on (CSR) is instigated by activation-induced cytidine deaminase, which converts cytosines in switch r
175 ation (CSR) is induced by activation-induced cytidine deaminase, which initiates a cascade of events
176 identify genes enabling BLM-deficient and/or cytidine deaminase-deficient cells to tolerate constitut
178 ere Tau functions in maintaining survival of cytidine deaminase-deficient cells, and ribosomal DNA tr
179 Igs and hypermutated IgM (activation-induced cytidine deaminase-deficient), or fully agammaglobulemic
180 lated high frequencies of activation-induced cytidine deaminase-dependent IgH locus chromosomal break
181 3B activity, providing new insights into how cytidine deaminase-induced mutagenesis might be activate
182 (PPR) protein SLO2, which lacks a C-terminal cytidine deaminase-like DYW domain, interacts in vivo wi
196 c mice (quasimonoclonal, activation-induced [cytidine] deaminase-Cre-tamoxifen-dependent estrogen rec
197 belongs to the AID/APOBEC protein family of cytidine deaminases (CDA) that bind to nucleic acids.
199 indirect activation of DNA editing by APOBEC cytidine deaminases and of an endogenous clocklike mutat
202 nfectivity factor (Vif) targets the cellular cytidine deaminases APOBEC3G (A3G) and APOBEC3F (A3F) fo
205 man APOBEC3 protein family of polynucleotide cytidine deaminases contributes to intracellular defense
206 show a frequent deletion polymorphism in the cytidine deaminases gene cluster APOBEC3 resulting in in
207 s recently proposed for the APOBEC family of cytidine deaminases in generating particular genome-wide
208 ptide-like (APOBEC) proteins are a family of cytidine deaminases involved in various important biolog
212 e catalytic subunit 3 (APOBEC-3) enzymes are cytidine deaminases that are broadly and constitutively
213 e earliest-diverged AID orthologs are active cytidine deaminases that exhibit unique substrate specif
215 otein B editing complex 3 family members are cytidine deaminases that play important roles in intrins
218 in both the nematode Caenorhabditis elegans (cytidine deaminases) and its food (Escherichia coli); wh
219 zyme-catalytic, polypeptide-like 3 (APOBEC3) cytidine deaminases, and SAMHD1 (a cell cycle-regulated
220 strate of some single strand-specific APOBEC cytidine deaminases, similar to the mutations that can t
221 signature attributed to the APOBEC family of cytidine deaminases, whereas others are confined to a si
222 t studies indicate that a subclass of APOBEC cytidine deaminases, which convert cytosine to uracil du
229 ages of cDNA synthesis, as well as excessive cytidine deamination (hypermutation) of the DNAs that ar
231 normalities but demonstrated elevated global cytidine deamination at deaminase intrinsic binding site
234 troviruses during replication as a result of cytidine deamination of minus-strand DNA transcripts.
235 Our data suggest that while APOBEC3-mediated cytidine deamination of MMTV may occur, it is not the ma
236 ombination (CSR) via transcription-dependent cytidine deamination of single-stranded DNA targets.
237 APOBEC3 restricts its viral targets through cytidine deamination of viral DNA during reverse transcr
238 L/6)) and knockout mice to determine whether cytidine deamination was important for APOBEC3's anti-MM
240 , gene conversion or switch recombination by cytidine deamination within the immunoglobulin loci.
241 ases away from the positions of AID-mediated cytidine deamination, suggesting DNA end resection befor
243 ion of a new radical species and a "trapped" cytidine derivative that can break down to cytosine.
244 covery of 80% of the G* and reduction of the cytidine derivative, proposed to be 3'-keto-deoxycytidin
245 hosphatidylcholine (PC) biosynthesis via the cytidine diphosphate (CDP)-choline pathway at the expens
247 respiring rat liver mitochondria with [(14)C]cytidine diphosphate leads to accumulation of radiolabel
248 ing greater partitioning of choline into the cytidine diphosphate-choline (CDP-choline) PC biosynthet
249 mice with the DNA-demethylating agent 5-aza-cytidine distinctly enhanced the antitumor response, int
250 21 nt and with the adenosine adjacent to the cytidine-guanosine (CG) dinucleotide motif led to a sign
252 denine in a DNA oligonucleotide and 8.15 for cytidine in a tertiary structure element from beet weste
253 cleotides and found the lowest affinity to 5'cytidine in correlation with the translational stress-re
254 aminases mutate cancer genomes by converting cytidines into uridines within ssDNA during replication.
255 These analogues were more emissive than cytidine (lambdaem 398-420 nm, Phi 0.009-0.687), and exc
256 motif, a cap analog (m(7)GTP), and a capped cytidine (m(7)GpppC), resolved to 2.6, 1.8 and 1.7 A, re
257 ate diphosphohydrolase 5/ adenylate kinase 1/cytidine monophosphate kinase 1 axis and the mitochondri
258 n unprecedented ability to attach a terminal cytidine monophosphate to cognate precursor peptide in c
260 e structure and function of the prototypical cytidine monophosphate-Kdo-dependent alpha-Kdo glycosylt
262 , 3-galactosyltransferase (GGTA1) KO, GGTA1/ cytidine monophosphate-N-acetylneuraminic acid hydroxyla
263 induce anti-Neu5Gc antibody when grafted in cytidine monophosphate-N-acetylneuraminic acid hydroxyla
264 ere we focused on the function of Drosophila cytidine monophosphate-sialic acid synthetase (CSAS), th
270 ng of ribonuclease A (RNaseA, 13.7 kDa) with cytidine nucleotide ligands and the binding of lysozyme
271 250 muM MPA) and upregulation of uridine and cytidine nucleotides (p < 0.001 at 24 h; 5 muM MPA) occu
272 f seven enzymes that catalyze deamination of cytidine nucleotides to uridine nucleotides (C-to-U) in
274 als, and humans modifies genomically encoded cytidine or adenosine nucleotides to uridine or inosine,
275 NAs, dCas9-AID-P182X (AIDx) directly changed cytidines or guanines to the other three bases independe
276 ynthesized para-substituted phenyl-imidazolo-cytidine ((Ph)ImC) analogues 5a-g and established a rela
277 nds suppress responses to challenge doses of cytidine-phosphate-guanidine (CpG)-containing DNA, which
278 y DNA hypermethylation of its canonical CpG (cytidine-phosphate-guanidine) island (CGI) promoter in g
279 and the Toll-like receptor 9 (TLR9) agonist cytidine-phosphate-guanosine oligodeoxynucleotide (CpG)
281 ase inhibitor, dCas9-AIDx converted targeted cytidines specifically to thymines, creating specific po
282 sis and polymerase activity of a fluorescent cytidine TNA triphosphate analogue (1,3-diaza-2-oxo-phen
284 and test if we could introduce site-specific cytidine to thymidine transitions in the absence of targ
285 lls and are initiated through deamination of cytidine to uracil by activation-induced cytidine deamin
286 tion-induced deaminase (AID), which converts cytidine to uracil within the Ig variable (IgV) regions.
287 DEAMINASE (CDA) catalyzes the deamination of cytidine to uridine and ammonia in the catabolic route o
288 ttern resembles the deamination signature of cytidine to uridine carried out by members of the APOBEC
290 breaks, and mediate the direct conversion of cytidine to uridine, thereby effecting a C-->T (or G-->A
291 able deaminases effectively convert specific cytidines to thymidines with 13% efficiency in Escherich
292 ss switch recombination (CSR) by deaminating cytidines to uridines at V region (V) genes and switch (
293 ion with the DNA methylation inhibitor 5-aza-cytidine, to activate an early skeletal muscle transcrip
294 d complementary DNA sequences, we discovered cytidine-to-uridine RNA editing in position 32 of two nu
295 ects of inhibiting viral cDNA production and cytidine-to-uridine-driven hypermutation of this cDNA.
297 nd betaine in alcohol-fed mice and decreased cytidine, uracil, fumarate, creatine phosphate, creatine
300 ls can tolerate high doses of these modified cytidines without any deleterious effects on physiology.
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