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1 dNTP binding is rapid with Kd values of 20 and 476 mum f
2 ct with regulatory (i.e., allosteric) Mg(2+)-dNTP-binding sites of nucleos(t)ide-metabolizing enzymes
6 nfluence of the restriction factor SAMHD1, a dNTP hydrolase (dNTPase) and RNase, on HBV replication.
11 mportance of SAMHD1 in the regulation of all dNTP pools and suggest that dGK inside mitochondria has
12 by GTP alone but instead, the levels of all dNTPs and the generation of a persistent tetramer that i
13 on fidelity, yet the consequences of altered dNTP pools on replication fidelity have not previously b
14 g a collection of yeast strains with altered dNTP pools, we discovered an inverse relationship betwee
15 e is sensitive to 2' modifications, although dNTPs can be incorporated, and mixed DNA-RNA templates c
16 lly exclusive functions of ssRNA binding and dNTP hydrolysis depending on dNTP pool levels and the pr
17 binding to the A1 sites generates dimer and dNTP binding to the A2 and catalytic sites generates act
18 mplex with different combinations of GTP and dNTP mixtures, which depict the full spectrum of GTP/dNT
20 certain combinations of loop 2 mutations and dNTP effectors perturbed ATP's role as an allosteric act
22 sion droplets in the presence of primers and dNTPs, followed by the recovery of the partner genes via
31 e EC50(dNTP) values for SAMHD1 activation by dNTPs are in the 2-20 mum range, and the half-life of th
33 volved in RNR substrate production can cause dNTP imbalances, which cannot be compensated by RNR or o
36 1 is a phosphohydrolase maintaining cellular dNTP homeostasis but also acts as a critical regulator i
37 ions of SAMHD1 in the regulation of cellular dNTP levels, as well as in HIV restriction and the patho
39 ght to result from the depletion of cellular dNTP pools, but it remains controversial whether the dNT
41 s involved in the regulation of the cellular dNTP pool and has been linked to cancer progression.
42 es, including HIV, by depleting the cellular dNTP pool available for viral reverse transcription.
43 ohydrolase activity by reducing the cellular dNTP pool to a level that cannot support productive reve
46 scription (RT) through depletion of cellular dNTPs but is naturally switched off by phosphorylation i
48 rivatives through the depletion of competing dNTPs, we show here that SAMHD1 reduces Ara-C cytotoxici
50 r ternary complexes with a non-complementary dNTP confirmed the presence of a state corresponding to
52 of the transcriptional response controlling dNTP production and cellular survival after UV damage.
53 ion conformation is observed and the correct dNTP stabilizes this complex compared with the binary co
54 e fingers close after binding to the correct dNTP, but that there is a second conformational change a
59 Considering that all natural nucleotides (D-dNTPs) and the building blocks (D-dNMPs) of DNA chains p
60 dNTPs, enantiomers of natural nucleotides (D-dNTPs), by any DNA polymerase or reverse transcriptase h
61 phosphate triphosphohydrolase that decreases dNTP pools, is frequently mutated in colon cancers, that
62 merase by promoting dNTP binding (decreasing dNTP Km), polymerase stimulates the helicase by increasi
63 acted in the absence of SAMHD1 degradation, dNTP pool elevation, or changes in SAMHD1 phosphorylatio
64 MHD1 has been reported to be able to degrade dNTPs and viral nucleic acids, which may both hamper HIV
65 catalyzed the addition of deoxynucleotides (dNTP) containing biotinlated 2'-deoxyadenosine 5'-tripho
66 ce and concentration of deoxyribonucleotide (dNTP) pools, which are strictly regulated by ribonucleot
68 cific dNTP triphosphohydrolase that depletes dNTP pools in resting CD4+ T cells and macrophages and e
70 embryos synthesize DNA, maternally deposited dNTPs can generate less than half of the genomes needed
72 AP-DNA binary complex and the Phi29 DNAP-DNA-dNTP ternary complex, residues Tyr-226 and Tyr-390 in th
73 ral comparison of binary DNA and ternary DNA-dNTP complexes of DNA polymerase beta, several side chai
74 recatalytic ternary structures (hPolbeta.DNA.dNTP) for both extension contexts, wherein the incoming
75 report crystal structures of ternary Pol.DNA.dNTP complexes between MeFapy-dG-adducted DNA template:p
81 of translocation, increased the affinity for dNTP in the post-translocation state by decreasing the d
82 gulation of SAMHD1 by siRNA expands all four dNTP pools, with dGTP undergoing the largest relative in
83 nscriptase ribozyme can incorporate all four dNTPs and can generate products containing up to 32 deox
86 lute and relative concentrations of the four dNTPs are key determinants of DNA replication fidelity,
87 tures, which depict the full spectrum of GTP/dNTP binding at the eight allosteric and four catalytic
98 e HIV-1 V148I RT mutant that is defective in dNTP binding and has DNA synthesis delay promoted RT sta
99 leads to a checkpoint-dependent increase in dNTP levels and (ii) this increase mediates the hypermut
103 ing this elevation by strategic mutations in dNTP metabolism genes eliminated the mutator effect of p
109 and Trp-483 hamper insertion of the incoming dNTP in the presence of Mg(2+) ions, a reaction highly i
110 te that the binding affinity of the incoming dNTP is controlled by the overall hydrophobicity of the
111 ses not only select the base of the incoming dNTP to form a Watson-Crick pair with the template base
127 ship between the concentration of individual dNTPs and the amount of the corresponding ribonucleotide
128 al and biochemical data provide insight into dNTP promiscuity at the secondary allosteric site and ho
136 ndings argue that Bcl2 reduces intracellular dNTPs by inhibiting ribonucleotide reductase activity, t
137 and especially tight nucleotide binding (Kd (dNTP) approximately 1.7 mum), compared with DNA polymera
140 tural basis for the discrimination against L-dNTPs by DNA polymerases or RTs has not been established
141 ural basis for D-stereoselectivity against L-dNTPs, enantiomers of natural nucleotides (D-dNTPs), by
147 ose activity is required for maintaining low dNTP concentrations in non-cycling T cells, dendritic ce
150 an S-phase checkpoint kinase that maintains dNTP levels during a normal cell cycle and up-regulates
153 ibitors presumably as a result of modulating dNTP pools that compete for recruitment by viral polymer
155 siRNA transfection the composition of the mt dNTP pool approached that of the controls, and mtDNA cop
157 closed was similar for all analog and native dNTPs (0.2 to 0.4 ms), indicating no kinetic impact on t
161 difficult DNA and incorporating non-natural dNTPs, due to their low fidelity and loose active site,
162 eraging 13-fold higher than those of natural dNTPs, and kcat values within 1.5-fold of those of nativ
167 ith pharmacological perturbations of de novo dNTP biosynthetic pathways could eliminate acute lymphob
171 gh genetic changes that alter the balance of dNTP binding and dissociation from DNA polymerases.
176 on of DNA damage checkpoint and depletion of dNTP concentrations to levels lower than those seen upon
179 zed "on the go." The rate-limiting enzyme of dNTP synthesis, ribonucleotide reductase, is inhibited b
180 t the level of RT that acts independently of dNTP concentrations and is specific to resting CD4 T cel
182 ents provide insight into the recognition of dNTP substrate molecules by the polymerase binary state.
183 is review, we discuss how a key regulator of dNTP biosynthesis in mammals, the enzyme ribonucleotide
187 ase (RR) catalyzes the rate-limiting step of dNTP synthesis and is an established cancer target.
192 g as measured by smFRET, but the addition of dNTPs induces the formation of a ternary complex having
194 een dN frequencies in RNA and the balance of dNTPs and ribonucleoside 5'-triphosphates (rNTPs) in the
195 back inhibition renders the concentration of dNTPs at gastrulation robust, with respect to large vari
198 -1 cells is suppressed by elevated levels of dNTPs in vivo, and the activity of Pol epsilon is compro
199 equivalent of the alpha-phosphate oxygen of dNTPs and two oxygens of the phosphonate group of the al
201 uction of p21 in MDDCs decreases the pool of dNTPs and increases the antiviral active isoform of SAMH
202 biting HIV infection, curtailing the pool of dNTPs available for reverse transcription of the viral g
206 itive to the relative concentration ratio of dNTPs specified by the RNA template slippage-prone seque
207 itive to the relative concentration ratio of dNTPs specified by the RNA template slippage-prone seque
212 vivo data support a model where an oxidized dNTPs pool together with aberrant BER processing contrib
214 , mutations and drug treatments that perturb dNTP pool levels disproportionately influence the viabil
215 iphosphohydrolase that cleaves physiological dNTPs into deoxyribonucleosides and inorganic triphospha
217 icase stimulates the polymerase by promoting dNTP binding (decreasing dNTP Km), polymerase stimulates
219 ave examined whether oxidation of the purine dNTPs in the dNTP pool provides a source of DNA damage t
220 reduced pools of both purine and pyrimidine dNTPs in mitochondria, whereas cytosolic pools were unaf
222 the suppressors identified here may regulate dNTP pool size, as well as similarities in phenotypes be
223 ng key Dun1 targets that negatively regulate dNTP synthesis, suppress the dun1Delta pol2-M644G synthe
224 aminases, and SAMHD1 (a cell cycle-regulated dNTP triphosphohydrolase) dNTPase, which maintains low c
228 he shift from 'S-phase' to 'damage-response' dNTP levels only minimally affected the activity, fideli
231 contrast, pol2-4 and POL2 cells have similar dNTP levels, which decline in the absence of Dun1 and ri
233 es in the thumb/fingers opening, RT sliding, dNTP binding disruption and in vitro and in vivo RT inhi
235 t instance of a Y-family-polymerase-specific dNTP, and this method could be used to probe the activit
236 es (A1) as well as coactivation by substrate dNTP binding to a distinct set of nonspecific activator
237 tructures of DNA polymerase I with substrate dNTPs have revealed key structural states along the cata
238 verity, suggesting that treatments targeting dNTP pools could modulate mutator phenotypes for therapy
239 26- to 78-fold lower affinity for rNTPs than dNTPs, but only a 2.6- to 6-fold differential in rates o
246 Ca(2+) and Mn(2+) substantially decrease the dNTP dissociation rate relative to Mg(2+), while Ca(2+)
247 e post-translocation state by decreasing the dNTP dissociation rate, and increased the affinity for p
248 NSAH depresses dGTP and dATP levels in the dNTP pool causing S-phase arrest, providing evidence for
249 whether oxidation of the purine dNTPs in the dNTP pool provides a source of DNA damage that promotes
251 scriptase revealed that alpha-CNPs mimic the dNTP binding through a carboxylate oxygen, two phosphona
252 ere, we report that SAMHD1 regulation of the dNTP concentrations influences HIV-1 template switching
253 e reacting alpha- and beta-phosphates of the dNTP, suggesting its role in stabilizing reaction interm
254 l, the findings suggest a model in which the dNTP alterations in the ndk and dcd strains interfere wi
256 treating HCMV, knowing the provenance of the dNTPs incorporated into viral DNA may help inform antivi
259 , SAMHD1 blocks HIV-1 infection through this dNTP triphosphohydrolase activity by reducing the cellul
260 oside triphosphate (dNTP) pool sizes through dNTP hydrolysis and modulates the innate immune response
262 ssion in the cell nucleus expanded the total dNTP pools to levels required for efficient mitochondria
263 We examined their effects on translocation, dNTP binding, and primer strand transfer between the pol
264 he cellular deoxynucleoside 5'-triphosphate (dNTP) concentration to a level at which the viral revers
269 SAMHD1 is a deoxynucleoside triphosphate (dNTP) triphosphohydrolase that cleaves physiological dNT
270 that alter the deoxynucleoside triphosphate (dNTP)-binding pocket, including those that confer resist
272 intracellular deoxynucleotide triphosphate (dNTP) pool, a limiting factor for retroviral reverse tra
273 f cellular deoxyribonucleoside triphosphate (dNTP) pool sizes through dNTP hydrolysis and modulates t
274 respect to deoxyribonucleoside triphosphate (dNTP) substrate, whereas a second compound is a competit
276 de triphosphate/ribonucleoside triphosphate (dNTP/rNTP) ratios, by the ability of DNA polymerases to
280 ailability of deoxynucleoside triphosphates (dNTPs), which are needed for HIV-1 reverse transcription
283 nced pools of deoxynucleotide triphosphates (dNTPs) necessary for DNA replication and maintenance of
284 sis of 2'-deoxyribonucleoside triphosphates (dNTPs) either by classical triphosphorylation of nucleos
286 nalogs of deoxyribonucleoside triphosphates (dNTPs), despite the enzymes' highly evolved mechanisms f
290 l and noncanonical nucleoside triphosphates (dNTPs) and has been associated with cancer progression a
294 V irradiation in vivo was not decreased when dNTP synthesis was suppressed by hydroxyurea, indicating
297 e important in resting CD4(+) T cells, where dNTP pools are reduced to nanomolar levels to restrict i
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