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1 ich is initiated by poly(A) tail shortening (deadenylation).
2 stimulates removal of its poly(A) tail (i.e. deadenylation).
3 rotects RNA(3'-rA) from ligation and further deadenylation.
4 domain of PAB1 blocked both their effects on deadenylation.
5 caf1b, AtCAF1b targets AtPI4Kgamma3 mRNA for deadenylation.
6 bunits CAF1 and CCR4 as factors required for deadenylation.
7 capping/5'-to-3' or 3'-to-5' direction after deadenylation.
8 RNAs, premature termination codons, and mRNA deadenylation.
9 larization, correspondingly accelerated CCR4 deadenylation.
10 ors involved in translation are required for deadenylation.
11 PAB1 oligomerization is a required step for deadenylation.
12 binding protein (PAB1) as necessary for CCR4 deadenylation.
13 4p and Pop2p deadenylases in Mpt5p-regulated deadenylation.
14 ntially regulate transcripts at the level of deadenylation.
15 zyme to the target mRNA, thereby stimulating deadenylation.
16 d mRNA decay initiated by miRNA-guided rapid deadenylation.
17 anced mt-mRNA decay by translation-dependent deadenylation.
18 residue predicted to bind magnesium disrupts deadenylation.
19 ynthetic RNA substrate in a process known as deadenylation.
20 transcripts, apparently by initiating their deadenylation.
21 vo for controlling the rate of specific mRNA deadenylation.
22 ns, contacting SAGA and contributing to mRNA deadenylation.
23 A specific mechanism triggers this deadenylation.
24 cal for determining the rate of ARE-mediated deadenylation.
25 stabilized mCRD-containing mRNA by impeding deadenylation.
26 of mRNA turnover to elucidate mechanisms of deadenylation.
27 ciated factor 1 (CAF1), is a major player in deadenylation.
28 xpression stabilized TNF mRNA by suppressing deadenylation.
29 3'-termini, consistent with protection from deadenylation.
30 g evidence indicates that TOBs regulate mRNA deadenylation.
31 contains multiple enzymes that catalyze mRNA deadenylation.
32 nanos1 and TDRD7 from miR-430b-mediated RNA deadenylation.
33 3 acts through a general mechanism to affect deadenylation.
34 F1 also represses translation independent of deadenylation.
35 is sufficient for repression, independent of deadenylation.
36 nd to be required for eIF4E effects on COX17 deadenylation.
37 tibility to mutations inhibiting cytoplasmic deadenylation, a process required for both 5'-to-3' and
38 trolled by a member of the Pumilio family of deadenylation activators Puf3p, requires an active Ccr4p
39 quitination of CNOT7 by MEX-3C regulates its deadenylation activity and is required for MHC-I mRNA de
41 n extensively characterized exonuclease with deadenylation activity that controls mRNA stability in p
42 crystal structures are essential for the 3'-deadenylation activity, suggesting that 3'-adenosine may
47 results suggest that miR-430 facilitates the deadenylation and clearance of maternal mRNAs during ear
48 mRNA is sufficient for both protection from deadenylation and deadenylation-independent decapping an
52 scription-pulsing approaches to monitor mRNA deadenylation and decay kinetics, we demonstrate the exi
55 the beta-globin reporter mRNA promoted rapid deadenylation and decay of hypo-adenylated reporter mRNA
72 many maternal proteins are downregulated by deadenylation and destabilization of their encoding mRNA
73 taining AU-rich elements (ARE), resulting in deadenylation and destabilization of these transcripts.
83 with a functional assay directly monitoring deadenylation and mRNA decay to characterize the effects
86 We find that TGEs accelerate the rate of deadenylation and permit the last 15 adenosines to be re
89 or bcd NRE mutations caused delayed bcd mRNA deadenylation and stabilization, resulting in protracted
90 decapping-independent NMD pathway involving deadenylation and subsequent 3'-->5' exonucleolytic deca
91 stabilizes host stress response mRNAs after deadenylation and subsequent cleavage near the adenylate
92 rated to direct target RNA reduction through deadenylation and subsequent degradation of target trans
97 ls and is thus a potential regulator of mRNA deadenylation and translation during early development.
98 that the interplay between polyadenylation, deadenylation and tumour-suppressor factors might preven
100 ed regions (UTRs) and subsequently promoting deadenylation and ultimate destruction of those mRNAs.
101 unique properties and is both protected from deadenylation and undergoes deadenylation-independent de
103 nslational repression occurs before complete deadenylation, and disrupting deadenylation with use of
104 untranslated region and recruits decapping, deadenylation, and exonucleolytic enzymes to PBs for RNA
105 ranslational repression precedes target mRNA deadenylation, and identify GW182, PABP, and deadenylase
107 Aly appears to protect the poly(A) tail from deadenylation, and REF/Aly-stabilized transcripts are fu
109 role for ubiquitin in regulating MHC-I mRNA deadenylation as ubiquitination of CNOT7 by MEX-3C regul
111 tion assays and in cell-free RNA binding and deadenylation assays, suggesting that it may play roles
112 P domain) of PAB1 substantially reduces CCR4 deadenylation at non-PUF3-controlled mRNA and correspond
115 structure in the 5' UTR dramatically reduces deadenylation by interfering with cap-DAN interactions.
117 nhibition of 3' cleavage, strongly activates deadenylation by PARN in the presence of CstF-50, and th
118 ent model was proposed in which TOBs promote deadenylation by recruiting CAF1-CCR4 deadenylase comple
119 so implicated in mediating the repression of deadenylation by the 3' UTR of another alphavirus, Venez
121 hat reduced translation, while not affecting deadenylation by themselves or when combined with ccr4De
123 mRNA was stabilized in mutants defective in deadenylation (ccr4Delta), mRNA decapping (dcp1), and th
126 tin ligases, associates with the cytoplasmic deadenylation complexes and ubiquitinates CNOT7(Caf1), t
127 the predominant effect of microRNA-mediated deadenylation concurrently shifts from translational rep
128 em zinc finger domain; it then promotes mRNA deadenylation, considered to be the rate-limiting step i
129 y in Saccharomyces cerevisiae occurs through deadenylation, decapping, and 5' to 3' degradation of th
130 he major mRNA turnover pathway that requires deadenylation, decapping, and 5'-to-3' exonucleolytic de
132 of mRNA decay enzymes, and help explain how deadenylation, decapping, and exonucleolytic decay can a
134 AREs have been shown to directly activate deadenylation, decapping, or 3'-to-5' exonucleolytic dec
136 anding/assembly" platform for formation of a deadenylation/decay mRNA-protein complex on an mCRD-cont
138 tion of even a small excess of ePAB inhibits deadenylation, demonstrating that the ePAB concentration
139 A degradation and repress expression by both deadenylation-dependent and -independent mechanisms, usi
140 Thus, human PUMs are repressors capable of deadenylation-dependent and -independent modes of repres
141 or pathway of eukaryotic mRNA decay involves deadenylation-dependent decapping followed by 5' to 3' e
142 antly, both yeast and mammalian AREs promote deadenylation-dependent decapping in the yeast system.
144 nger RNA degradation in eukaryotes occurs by deadenylation-dependent decapping which leads to 5'-to-3
146 h1 specifically affects mRNA turnover in the deadenylation-dependent decay pathway, but does not act
148 ound that while Olfr mRNAs are degraded by a deadenylation-dependent mechanism, they are largely prot
150 nd other components of the Lsm1p-Lsm7p/Pat1p deadenylation-dependent mRNA decapping complex were also
151 ody-associated 5' to 3' mRNA decay pathways, deadenylation-dependent mRNA decay (DDD) and nonsense-me
157 pathways of eukaryotic mRNA decay occur via deadenylation followed by 3' to 5' degradation or decapp
158 yotic mRNA decay proceeds through an initial deadenylation followed by 5' end decapping and exonucleo
159 f eukaryotic mRNA degradation initiates with deadenylation followed by decapping and 5' to 3' degrada
160 t, a major pathway of mRNA decay begins with deadenylation followed by decapping and 5'-3' exonucleas
161 major pathway for mRNA decay is initiated by deadenylation followed by decapping and 5'-3' exonucleol
162 sequence-specific manner, resulting in mRNA deadenylation followed by exonucleolytic decay, mRNA end
163 e generalized process of mRNA decay involves deadenylation followed by release from translating polys
164 ic messenger RNA (mRNA) turnover begins with deadenylation, followed by decapping and 5' to 3' exonuc
165 athway of mRNA decay in yeast initiates with deadenylation, followed by mRNA decapping and 5'-3' exon
166 ivity, this activity is not required for its deadenylation function in vivo, and CCR4 is the primary
167 vo effect of AU-rich elements (AREs) on mRNA deadenylation has been developed from Xenopus activated
171 Stabilization occurs as a result of slower deadenylation in the ssa1(ts) strain, suggesting that Hs
173 ) interact with the polyA tail, (ii) inhibit deadenylation in vitro, and (iii) stabilize transcripts
174 he CCF-1/Pop2p deadenylase and can stimulate deadenylation in vitro, and that CCF-1 is partially resp
175 reases stability in vivo but does not affect deadenylation in vitro, comparable to the effects of del
177 nuclease involved in the mCRD-mediated rapid deadenylation in vivo and also associated with UNR.
178 s support the model that the control of CCR4 deadenylation in vivo occurs in part through the removal
179 AF1-specific functional regions required for deadenylation in vivo, we targeted for mutagenesis six r
183 roteins are required for full repression and deadenylation in vivo; their removal dramatically stabil
184 oupled from mRNA body decay, and the rate of deadenylation increases with the number of tandem AUUUAs
186 t for both protection from deadenylation and deadenylation-independent decapping and an extended poly
188 pts are efficiently recognized, targeted for deadenylation-independent decapping, and show NMD trigge
190 ion codons (nonsense mRNAs) are targeted for deadenylation-independent degradation in a mechanism tha
197 Transcript is stabilized when accelerated deadenylation is impeded by blocking translation initiat
207 s suggest that inhibition of splicing and/or deadenylation may be effective therapies for Lsm1-over-e
210 ly(A) tail exacerbate dependency on PABP for deadenylation, more potent miRNA-binding sites partially
211 se results support a dynamic interplay among deadenylation, mRNP remodeling, and P-body formation in
214 binds to RNAs containing AREs, and promotes deadenylation of a model ARE transcript in a cell-based
216 TTP and its related proteins stimulated the deadenylation of ARE-containing, polyadenylated transcri
217 TTP may remain poised to rapidly reactivate deadenylation of bound transcripts to downregulate gene
218 hypothesis where mTOR is the tag, preventing deadenylation of CaMKIIalpha mRNA, whereas HuD captures
219 sults strongly suggest that zygote-dependent deadenylation of cyclin A1 and cyclin B2 mRNAs is respon
221 ne hydrolase (MTAN) catalyzes the hydrolytic deadenylation of its substrates to form adenine and 5-me
224 nopus oocytes and early embryos and prevents deadenylation of mRNAs, suggesting its importance in the
225 on and decay in nuclear extract and prevents deadenylation of naked RNA by a purified deadenylase, li
227 do not directly participate in the catalytic deadenylation of ribosomal RNA, play a critical role in
228 ) that directly participate in the catalytic deadenylation of RNA resulted in greater than 3 logs of
233 cytoplasmic deadenylases and promotes rapid deadenylation of target mRNAs both in vitro and in cells
235 by p38 MAPK was found to be specific because deadenylation of the beta-globin reporter mRNA either la
239 s, and this has been shown to be mediated by deadenylation of the mRNA and inhibition by the Bruno re
240 ion intermediates revealed that the complete deadenylation of the mRNA triggers its decapping and dec
243 o be due to inhibition of polyadenylation or deadenylation of the transcript, followed by exosomal de
245 em CCCH zinc finger protein family, promotes deadenylation of tumor necrosis factor-alpha and granulo
252 decay process of this mRNA, dTIS11 enhances deadenylation performed by the CCR4-CAF-NOT complex whil
254 gement in mRNP organization and suggest that deadenylation promotes mRNA decapping by both the loss o
257 and correspondingly blocked eIF4E effects on deadenylation, PUF3 essentially bypassed this P domain r
258 o shape maternal mRNA stability by affecting deadenylation rate in a translation-dependent manner.
260 the p38 MAPK pathway predominantly regulates deadenylation, rather than decay of the mRNA body, and t
261 ecapping, and show NMD triggered accelerated deadenylation regardless of the position of the nonsense
264 cludes three distinct steps: a rate-limiting deadenylation, removal of the 5'-7-methyl-G (decapping),
266 MicroRNAs regulate gene expression through deadenylation, repression, and messenger RNA (mRNA) deca
267 The ability of TTP to promote transcript deadenylation required Mg(2+), but not ATP or prior capp
272 e fate of mammalian mRNA is modulated at the deadenylation step by a protein that recruits poly(A) nu
274 mediated by the mCRD, demonstrating that the deadenylation step is coupled to ongoing translation of
275 ii) the hCaf1z subunit, in addition to rapid deadenylation, subjects substrate RNAs to slow exonucleo
276 thway, a nonsense codon triggers accelerated deadenylation that precedes decay of the PTC-containing
277 ntify a new role for ubiquitin in regulating deadenylation, the initial and often rate-limiting step
278 y conserved PUF proteins stimulate CCR4 mRNA deadenylation through binding to 3' untranslated region
279 ese results imply that CAF1, while affecting deadenylation through its contact to CCR4, has functions
280 ed for P body formation, viral inhibition of deadenylation, through Pan3 degradation, is a potential
281 quired for binding CCR4, reduced the rate of deadenylation to a lesser extent and resulted in in vivo
283 he genes in vertebrates, where they regulate deadenylation, translation, and decay of the target mess
288 tion initiation factor known to control CCR4 deadenylation, was shown to affect PAN2 activity in vivo
291 hanisms: repression by Puf4p is dependent on deadenylation, whereas repression by Mpt5p can occur thr
292 which binds only to monomeric Orb2, promotes deadenylation, whereas the putative poly(A) binding prot
293 In mammalian cells, mRNA decay begins with deadenylation, which involves two consecutive phases med
294 However, little is known about rice mRNA deadenylation, which is an important regulation step of
296 ne major pathway for mRNA turnover occurs by deadenylation, which leads to decapping and subsequent 5
300 efore complete deadenylation, and disrupting deadenylation with use of an internal polyadenylate tail
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