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1 lved in dNTP biosynthesis (e.g., RNR or dCMP deaminase).
2 s are damaged by activation-induced cytidine deaminase.
3 activity of the activation-induced cytidine deaminase.
4 se complexing protein 2 (CD26) and adenosine deaminase.
5 umor stroma, and down-regulation of cytidine deaminase.
6 anosine resistant to degradation by cytidine deaminase.
7 t dehydroxylamination catalyzed by adenosine deaminase.
8 quired in the reaction catalyzed by cytidine deaminase.
9 to interact with activation-induced cytidine deaminase.
10 ctive BLM and the downregulation of cytidine deaminase.
11 host antiviral factors, the APOBEC3 cytidine deaminases.
12 ivity of members of the AID/APOBEC family of deaminases.
13 r regulating the activity of A3F and related deaminases.
14 member of the AID/APOBEC family of cytidine deaminases.
15 ource of mutation in cancer, APOBEC cytidine deaminases.
16 nd that this is largely due to host cytidine deaminases.
17 that possesses high density of Mycobacterium deaminases.
18 with lineage-specific expression of cytidine deaminases.
20 ation of anaplerotic reactions driven by AMP deaminase 3 (Ampd3) and catabolism of branched-chain ami
21 kinase/ganciclovir (TK/GCV), yeast cytosine deaminase/5-fluorocytosine (yCD/5-FC) and nitroreductase
25 ure and the temporal expression of adenosine deaminase acting on RNA (ADAR) contribute to cis- and tr
26 and filamentous fungi do not have adenosine deaminase acting on RNA (ADAR) orthologs and are believe
27 double-stranded RNA that undergoes adenosine deaminase acting on RNA (ADAR)-dependent adenosine-to-in
28 nflammation-responsive RNA editase adenosine deaminase acting on RNA (ADAR)1 gene, occurs in 30-50% o
30 we exploit the catalytic domain of Adenosine Deaminase Acting on RNA (ADAR2) that deaminates A to ino
32 the Zalpha-binding domain of human adenosine deaminase acting on RNA 1 (ADAR1, hZalphaADAR1), as conf
33 inhibits editing, we do show that adenosine deaminase acting on RNA 1 and 2 and fibrillarin negative
36 osine deaminase activity by ADAR2 (adenosine deaminase acting on RNA type 2) to transcripts in mammal
38 characteristic of those favored by adenosine deaminase acting on RNA-1 (ADAR1), which catalyzes in do
40 to-inosine RNA editing mediated by adenosine deaminase acting on RNA1 (ADAR1) promotes cancer progres
42 (A-to-I) RNA editing, catalyzed by Adenosine DeAminases acting on double-stranded RNA(dsRNA) (ADAR),
43 tases-like (OASL)(rs1169279CT) and adenosine deaminases acting on RNA (ADAR)(rs1127309TC) genes were
47 tains residues conserved with known cytidine deaminase active sites; however, some PPR editing factor
48 deaminase activity and what are the relative deaminase activities for each APOBEC member remain uncle
49 that Vif binds and inhibits the non-cytosine deaminase activities of intact A3G and intact A3F, allow
50 Here, we performed a family-wide analysis of deaminase activities on C and mC by using purified recom
52 in vitro characterization of DNA binding and deaminase activities using purified wild-type and variou
54 ein, the interplay between sequence specific deaminase activity and A3G binding to ssDNA remains cont
58 ether the rest of APOBEC members have any mC deaminase activity and what are the relative deaminase a
59 as13 (dCas13) to direct adenosine-to-inosine deaminase activity by ADAR2 (adenosine deaminase acting
61 ngs, the Y315A mutant exhibited little to no deaminase activity in an Escherichia coli DNA mutator re
64 or the different haplotypes, suggesting that deaminase activity may be an important factor in determi
65 enome sequencing has implicated the cytosine deaminase activity of apolipoprotein B mRNA editing enzy
66 r each individual domain, as well as for the deaminase activity of CD2 domain in the full-length A3F.
68 t growth-promoting bacteria that express ACC deaminase activity protect plants from growth inhibition
70 te a simple method for assaying DNA cytosine deaminase activity that eliminates potential polymerase
72 c increases in CD26 expression and adenosine deaminase activity were observed in PTMs during chronic
73 c deaminase APOBEC3A leads to elevated ssDNA deaminase activity, likely by facilitating opening of th
74 057c/UK114 protein family have imine/enamine deaminase activity, notably on 2-aminoacrylate (2AA).
75 he seven haplotypes showed high cytosine (C) deaminase activity, with hap V displaying extremely high
79 Little is known about the role of adenosine deaminase (ADA) 2 in regulation of immune responses, alt
81 vide in vivo genetic evidence that adenosine deaminase (ADA) deficiency leads to excess plasma adenos
83 Staufen1 exhibit dynamic sliding whereas two deaminases ADAR1 and ADAD2 mostly remain immobile when b
84 ng is caused by down-regulation of adenosine deaminase ADAR2 and that editing of at least one other A
86 y evolutionary precursors, the antibody gene deaminase AID and the RNA/DNA editing enzyme APOBEC1 (A1
87 actors and Aicda (which encodes the cytidine deaminase AID) and thus silenced B cell-specific gene ex
90 is initiated by activation-induced cytidine deaminase (AID) and requires base excision repair (BER)
91 ve reported that activation-induced cytidine deaminase (AID) and ten-eleven-translocation (TET) famil
102 1, and paradoxically also activation-induced deaminase (AID) involved in somatic hypermutations/class
109 s, we used human activation-induced cytidine deaminase (AID) to identify genes preventing R loops.
111 , recruitment of activation-induced cytidine deaminase (AID) to S regions is critical for CSR; howeve
113 active dCas9 to recruit variants of cytidine deaminase (AID) with MS2-modified sgRNAs, we can specifi
114 rt the fusion of activation-induced cytidine deaminase (AID) with nuclease-inactive clustered regular
116 ession levels of activation-induced cytidine deaminase (AID), a key player in B-cell responses to ant
117 A, which encodes activation-induced cytidine deaminase (AID), display an impaired peripheral B cell t
118 is initiated by activation-induced cytidine deaminase (AID), the activity of which leads to DNA doub
119 e biomarkers are activation-induced cytidine deaminase (AID), the enzyme of class switch recombinatio
122 ersification is driven by activation-induced deaminase (AID), which converts cytidine to uracil withi
123 permutation (SHM) enzyme, Activation Induced Deaminase (AID), which overlaps the CpG methylation site
124 introduction of activation-induced cytidine deaminase (AID)-instigated DNA double-strand breaks into
132 ve proposed that activation-induced cytidine deaminase (AID, encoded by AICDA) links chronic inflamma
133 zymes in the biosynthetic network: threonine deaminase (also named l-O-methylthreonine resistant 1 [O
136 -editing enzyme complex 1 (APOBEC1) cytidine deaminase and Deadend-1, which are involved in C-to-U RN
137 ynthetic lethal interaction between cytidine deaminase and microtubule-associated protein Tau deficie
138 ivity, expresses activation-induced cytidine deaminase and T-bet, and exhibits evidence of somatic hy
139 In this work, a combination of creatinine deaminase and urease has been chosen as a model system t
141 activation of DNA editing by APOBEC cytidine deaminases and of an endogenous clocklike mutational pro
142 Here we engineered programmable cytidine deaminases and test if we could introduce site-specific
143 he nematode Caenorhabditis elegans (cytidine deaminases) and its food (Escherichia coli); when fed fo
144 tive Streptococcus pyogenes Cas9, a cytidine deaminase, and an inhibitor of base excision repair.
145 of inhibitors of adenosine kinase, adenosine deaminase, and the equilibrative nucleoside transporter:
146 lytic, polypeptide-like 3 (APOBEC3) cytidine deaminases, and SAMHD1 (a cell cycle-regulated dNTP trip
147 mutation signature associated with cytidine deaminase APOBEC, which correlates with the upregulation
148 loop 1 to mimic the more potent cytoplasmic deaminase APOBEC3A leads to elevated ssDNA deaminase act
149 The catalytic activity of human cytidine deaminase APOBEC3B (A3B) has been correlated with kataeg
151 Overexpression of the antiviral DNA cytosine deaminase APOBEC3B has been linked to somatic mutagenesi
153 The single-stranded DNA (ssDNA) cytidine deaminase APOBEC3F (A3F) deaminates cytosine (C) to urac
154 Functional analyses identified the cytidine deaminase APOBEC3G as a barrier for chimpanzee-to-gorill
156 ls introduced by activation-induced cytidine deaminase are processed by uracil-DNA glycosylase (UNG)
160 olypeptide-like 3 (APOBEC3; A3) DNA cytosine deaminases can be incorporated into progeny virions and
163 ntified that L306 in the C-terminal cytidine deaminase (CD) domain contributed to its core localizati
164 with two Zn-coordinated homologous cytosine deaminase (CD) domains, with the others being A3G, A3D,
166 ibilities for anti-cancer treatment.Cytidine deaminase (CDA) deficiency leads to genome instability.
167 tetrahydrouridine (THU) to inhibit cytidine deaminase (CDA), the enzyme that otherwise rapidly deami
170 ong isoform of the bacterial enzyme cytidine deaminase (CDDL), seen primarily in Gammaproteobacteria.
171 rs, possibly due to an early increase of ADO deaminase complexing protein 2 (CD26) and adenosine deam
173 asimonoclonal, activation-induced [cytidine] deaminase-Cre-tamoxifen-dependent estrogen receptor 2 [E
175 hat has shown clinical benefit for adenosine deaminase-deficient (ADA-deficient) SCID when combined w
176 genes enabling BLM-deficient and/or cytidine deaminase-deficient cells to tolerate constitutive DNA d
178 unctions in maintaining survival of cytidine deaminase-deficient cells, and ribosomal DNA transcripti
181 h frequencies of activation-induced cytidine deaminase-dependent IgH locus chromosomal breaks and tra
182 pidly deaminated by the isolated human ADAR2 deaminase domain (hADAR2-D) to probe these interactions.
183 ating ssDNA interaction with or entry to the deaminase domain and hypothesize that RNA bound to Tyr-3
184 ported crystal structures of the human ADAR2 deaminase domain bound to duplex RNA revealing a protein
186 his work, we examine the activity of the DYW deaminase domain through truncation or mutagenesis of th
187 , many PPR proteins include a C-terminal DYW deaminase domain with characteristic zinc binding motifs
188 catalytically inactive and CD2 is the active deaminase domain, presence of CD1 on the N-terminus of C
191 ubstrates are deaminated efficiently by ADAR deaminase domains at dA-C mismatches and with E to Q mut
193 red base editors containing mutated cytidine deaminase domains that narrow the width of the editing w
194 es are the seven human APOBEC3 deoxycytidine deaminases, each with unique target sequence specificity
197 a single enzyme, activation-induced cytidine deaminase (encoded by Aicda), initiates both reactions.
198 neered fusions of CRISPR/Cas9 and a cytidine deaminase enzyme that retain the ability to be programme
201 d with increased activation-induced cytidine deaminase expression, and correlate with increased risk
202 a significant decline in activation-induced deaminase expression, resulting in decreased switch regi
204 Here, the mechanisms behind bacterial ACC deaminase facilitation of plant growth and development a
205 is unique within the zinc-dependent cytidine deaminase family as being allosterically regulated, acti
211 al structure of a dTTP-bound deoxycytidylate deaminase from the bacteriophage S-TIM5, confirming that
213 ablation of the activation-induced cytidine deaminase gene required for class switch recombination/s
214 o upregulate the activation-induced cytidine deaminase gene through in vitro T-dependent and T-indepe
215 equent deletion polymorphism in the cytidine deaminases gene cluster APOBEC3 resulting in increased e
216 din was substituted with the human adenosine deaminase (hADA1)-streptavidin complex and adenosine as
217 B (A3B) single-stranded DNA (ssDNA) cytosine deaminase has important roles in innate immunity but is
220 was dependent on activation-induced cytidine deaminase, hematopoietic MyD88 expression, and an intact
221 cations for the control of another mutagenic deaminase, human AID, and provides a rationale for its r
223 genomes have implicated the APOBEC3 cytosine deaminases in oncogenesis, possibly offering a therapeut
224 55 target Aicda (activation-induced cytidine deaminase) in this process and, in combination with a ga
225 ty, providing new insights into how cytidine deaminase-induced mutagenesis might be activated in tumo
226 e: (1) dT+dC and (2) coadministration of the deaminase inhibitor, tetrahydrouridine (THU), with dTMP+
228 e (APOBEC) proteins are a family of cytidine deaminases involved in various important biological proc
229 ed for editing two of the sites, but another deaminase is able to supply the deamination activity for
232 tein SLO2, which lacks a C-terminal cytidine deaminase-like DYW domain, interacts in vivo with the DY
235 BEC3G binds single-stranded DNA as an active deaminase monomer, subsequently forming catalytic-inacti
240 and CD73) and breakdown (CD26 and adenosine deaminase) on T cells from blood, lymph nodes, and intes
242 -l-methionine (SAM) enzyme that can act as a deaminase or a dehydrogenase depending on the nature of
243 t of wild-type mice with pegylated adenosine deaminase or CD73 antibodies also significantly reduced
244 e, we report the discovery of a new class of deaminases, predominantly found in mycobacterial species
248 rent base-editing platforms, including their deaminase recruitment strategies and editing outcomes, a
250 fic residues critical for editing, conserved deaminase residues in each PPR protein were mutagenized.
251 refore, the DYW motif, and specifically, the deaminase residues, of QED1 and RARE1 are required for e
252 oding nucleoside diphosphate kinase and dCTP deaminase, respectively, had a strongly suppressive effe
254 nscriptomes demonstrate that ADAR (adenosine deaminase, RNA-specific)-mediated RNA editing dynamicall
255 Single-strand DNA-specific APOBEC cytidine deaminase(s) are major source(s) of mutation in several
256 model used is not informative for adenosine deaminase-SCID, whereas hypomorphic mutations lead to le
257 associated) and lysosome function (adenosine deaminase) showed differential alternative splicing even
258 with altered CpGs and APOBEC-family cytosine deaminases similar to mutation signatures derived from s
259 some single strand-specific APOBEC cytidine deaminases, similar to the mutations that can typify the
260 acterize the interaction of A3G protein with deaminase specific and nonspecific ssDNA substrates.
261 onstrated that A3G has elevated affinity for deaminase specific ssDNA than for nonspecific ssDNA.
262 d by stronger and more stable complexes with deaminase specific ssDNA than with nonspecific ssDNA.
263 ublished APOBEC and phylogenetically related deaminase structures, as it is the first without zinc in
266 APOBEC3B is a single-stranded DNA cytosine deaminase that functions normally as a nuclear-localized
268 am effector APOBEC3, an IFN-induced cytidine deaminase that introduces lethal mutations during retrov
272 ic subunit 3 (APOBEC-3) enzymes are cytidine deaminases that are broadly and constitutively expressed
273 LOXs) are a family of copper-dependent oxido-deaminases that can modify the side chain of lysyl resid
275 t-diverged AID orthologs are active cytidine deaminases that exhibit unique substrate specificities a
276 AID / APOBEC genes are a family of cytidine deaminases that have evolved in vertebrates, and particu
277 diting complex 3 family members are cytidine deaminases that play important roles in intrinsic respon
278 BEC3s (A3s) are single-stranded DNA cytosine deaminases that provide innate immune defences against r
279 a hybrid of a cytosine as well as a guanine deaminase, thereby conferring Msd the ability to expand
280 is likely conserved among all polynucleotide deaminases, thereby opening the door for the design of m
281 , as illustrated by the ability of adenosine deaminase to deaminate (tz)A as effectively as adenosine
284 e RNA allowing activation-induced (cytosine) deaminase to promote somatic hypermutation on both DNA s
285 ty used and then applied the enzyme D-serine deaminase to remove significant levels of D-serine.
287 se editing relies on recruitment of cytidine deaminases to introduce changes (rather than double-stra
288 ncer tissues presenting concomitant cytidine deaminase underexpression and Tau upregulation open up n
290 (TK007 and TK(SR39) mutants), yeast cytosine deaminase:uracil phosphoribosyltransferase (yCD:UPRT) an
291 Members of the APOBEC3 family of cytidine deaminases vary in their proportions of a virion-incorpo
292 OBEC3G (A3G-CTD), an ssDNA-specific cytosine deaminase, was expressed in an Escherichia coli strain d
293 therapeutically useful enzyme yeast cytosine deaminase, we obtained a approximately 3-fold change in
294 zyme 1-aminocyclopropane-1-carboxylate (ACC) deaminase, when present either on the surface of plant r
295 ed APOBEC3B as the more likely major mutator deaminase, whereas the role of APOBEC3A is not establish
296 R) is induced by activation-induced cytidine deaminase, which initiates a cascade of events leading t
297 in the race by expressing activation-induced deaminase, which unleashes a tsunami of mutations in the
298 crystal structure of a complex of a cytidine deaminase with ssDNA bound in the active site at 2.2 A.
300 l remodeling and down-regulation of cytidine deaminase without depletion of tumor stromal content.
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