コーパス検索結果 (1語後でソート)
通し番号をクリックするとPubMedの該当ページを表示します
1 (imitating a product of spontaneous cytosine deamination).
2 A is, by contrast, highly proficient at C/mC deamination.
3 he presence of A3A did not yield evidence of deamination.
4 -stranded nucleic acids and is important for deamination.
5 mation (or sugar pucker) are compatible with deamination.
6 tosine (m(3)C) as a pre-requisite for C-to-U deamination.
7 pair to remove uracils arising from cytosine deamination.
8 can survive the bisulfite treatment without deamination.
9 protein function through targeted nucleotide deamination.
10 Cytosine methylation promotes deamination.
11 target cytosine is sufficient to compromise deamination.
12 ther PPR protein is believed to catalyze the deamination.
13 in the conversion of cytidine to uridine by deamination.
14 -41, whose neural expression is dependent on deamination.
15 ay that starts with a transaminase-dependent deamination.
16 in part on their frequency of formation and deamination.
17 transferases and spontaneous methyl-cytosine deamination.
18 ation hotspots are largely determined by AID deamination.
19 curring somatic mutations caused by cytosine deamination.
20 from DNA, particularly those resulting from deamination.
21 te the role played by the C3 hydroxyl during deamination, 3-deutero-3-fluoro analogues of both substr
22 ptor 2C (5-HT2CR) by site-specific adenosine deamination (A-to-I pre-mRNA editing) substantially incr
23 artially purified NTD did not show intrinsic deamination activity and did not enhance the activity of
24 ned that virion-packaged APOBEC3 retains its deamination activity and that allelic differences in APO
27 virus (HBV), we found that Hsp90 stimulates deamination activity of APOBEC-3G (A3G), A3B, and A3C du
28 tively regulates the potentially harmful DNA deamination activity of APOBEC3H while, at the same time
29 lobal metabolite analysis indicated that the deamination activity of GDH might regenerate 2-oxoglutar
31 in locus RNA substrates to stimulate AID DNA deamination activity on its in vivo substrate sequences
34 argets have adopted to escape the impacts of deamination activity, including changing the GC content
35 cular Hsp90, stimulate APOBEC-3-mediated DNA deamination activity, suggesting a potential physiologic
36 ntify mutations in Coq6 that abrogate the C4-deamination activity, whereas preserving the C5-hydroxyl
45 nfectivity factor Vif, through deoxycytidine deamination and a deamination-independent mechanism.
46 nce-intrinsic properties, which regulate AID deamination and affect the preferential access of downst
47 3A that are known to be required for its DNA deamination and anti-retrotransposition activities were
48 reactions including oxidative demethylation/deamination and myeloperoxidation, it is unclear whether
49 : T mispairs caused by 5-methylcytosine (mC) deamination and other lesions including uracil (U) and 5
50 mechanistic insights into APOBEC3A-mediated deamination and provide the structural basis for further
51 herichia coli and other bacteria, sequential deamination and reduction steps in riboflavin biosynthes
54 work, we examined the mechanism of cytosine deamination and the response of the uncatalyzed reaction
55 s of its C4-aminated substrate, allowing its deamination and ultimately its conversion into coenzyme
56 d cytidine deaminase (AID) mediates cytosine deamination and underlies two central processes in antib
57 e-like) protein family catalyze DNA cytosine deamination and underpin a variety of immune defenses.
58 gated their sensitivity toward oxidation and deamination and we studied the C-C bond cleaving reactiv
59 ucturally diverse enzymes which catalyze the deamination and/or isomerization of amino acids in natur
60 ne dinucleotides are 'hotspots' for cytosine deamination, and others experience little or no editing
61 ute an essential time window for AID-induced deamination, and provide a novel DNA damage mechanism re
63 arguing against a 1,2-migration mechanism of deamination-and that homolysis of SAM concomitant with H
65 he mutagenic effects of spontaneous cytosine deamination are sufficient to increase cancer incidence
67 Among many forms of nucleic acid damage, deamination arises from several unrelated mechanisms, in
68 sidues shared many attributes with bisulfite deamination artifacts and were observed at comparable le
70 ral infection and highlight APOBEC3-mediated deamination as a previously unidentified mechanism for a
71 s observation, the immunoglobulin (Igh) gene deamination as measured by uracil accumulation occurs pr
72 ting factors has been proposed to catalyze C deamination, as it shows sequence similarities with cyti
77 skin lesions suggests that enzyme-catalyzed deaminations at adjacent C sites followed by normal repl
79 lection of local dinucleotide substrates for deamination but is unlikely to be part of the higher lev
80 ymidine inhibited mycoplasma-associated dFdC deamination but were efficiently catabolized (removed) b
83 own by lack of inhibition of AID-mediated dC deamination by other bivalent metal ions, such as Zn(2+)
84 the viral genome from lethal levels of cDNA deamination by promoting APOBEC3 protein degradation; ho
86 In spite of this in vitro activity, cytidine deamination by virion-packaged APOBEC3 of MMTV early rev
87 tudy informs how methylation, oxidation, and deamination can interplay in the genome and suggests A3A
88 tor has faster local motions than GMP in the deamination complex but is more constrained than IMP in
95 all ox-mCs by >3700-fold, arguing that ox-mC deamination does not contribute substantially to demethy
97 canning trajectories, ssDNA contraction, and deamination efficiencies depend on motif sequence, locat
99 thway involving separate decarboxylation and deamination enzymatic steps from tyrosine to the key int
100 re, we observe a comparable frequency of AID deamination events between the c-myc intronic sequence a
104 However, precise mechanisms regulating AID deamination frequency remain incompletely understood.
105 .1 channels undergo a specific enzymatic RNA deamination, generating a channel with a single amino ac
106 , in vitro biochemical analyses of adenosine deamination have been conducted using vertebrate-like io
108 de the first demonstration that A3G cytosine deamination hotspots are defined by both the sequence co
110 DNA synthesis, as well as excessive cytidine deamination (hypermutation) of the DNAs that are synthes
112 an result from AID/APOBEC-catalysed cytidine deamination in the vicinity of DNA breaks, likely throug
113 isplatin ICLs undergo preferential oxidative deamination in vitro, and AP endonuclease 1 (APE1) can c
114 Genome-wide patterns of APOBEC3-catalyzed deamination in yeast reveal APOBEC3B and 3A as the deami
115 ism contributing to the burden of nucleobase deamination: incorporation of hypoxanthine and xanthine
120 n progress can be monitored by following the deamination-induced change in fluorescence of the (th)A-
121 hat are known for restriction of HIV through deamination-induced mutational inactivation, e.g. APOBEC
123 find that whereas photoproduct formation and deamination is greatly inhibited for the CPDs closest to
127 ta background, indicating that Fcy1-mediated deamination is one cause of breakage and contractions in
131 e deaminase (AID) initiates CSR by promoting deamination lesions within Smu and a downstream acceptor
132 Our study suggests a TET1-induced oxidation-deamination mechanism for active DNA demethylation in ma
133 filamentous ascomycetes, involving adenosine deamination mechanisms distinct from metazoan ADARs.
137 However, the data indicate that the target deamination motif (5'-TC for APOBEC3A and 5'-CC for APOB
139 ults obtained are consistent with amino acid deamination occurring by a stepwise E1 cB elimination me
141 ss of genome editing tools based on directed deamination of 2-deoxyadenosines in DNA/RNA hybrids.
142 ine from mutagenic G.T mispairs generated by deamination of 5-methylcytosine (mC), and downstream bas
143 s the repair of G.T mismatches that arise by deamination of 5-methylcytosine (mC), and it excises 5-f
144 ine from mutagenic G.T mispairs arising from deamination of 5-methylcytosine (mC), and it processes o
146 ial step in the demethylation process can be deamination of 5-methylcytosine producing the TpG altera
151 on double-stranded RNA (ADARs) catalyze the deamination of adenosine (A) to produce inosine (I) in d
152 e deaminase acting on RNA, catalyzes the C-6 deamination of adenosine (A) to produce inosine (I) in R
153 cting on RNA (ADARs) catalyze the hydrolytic deamination of adenosine to inosine in double-stranded R
154 ich catalyzes in double-stranded RNA the C-6 deamination of adenosine to produce inosine, which is re
155 vulinic acid as nucleophile in the oxidative deamination of an N-acetylneuraminic acid thioglycoside
156 sp(3) carbon (2-methylaza-arenes) occurs via deamination of benzylamine followed by C-sp(3)-H bond ac
157 robust AID- and transcription-dependent DNA deamination of both strands of transcribed SHM substrate
159 G cells, IFNgamma and TNF-alpha each induced deamination of cccDNA and interfered with its stability;
162 mily consists of seven enzymes that catalyze deamination of cytidine nucleotides to uridine nucleotid
163 icts HIV-1 replication by inducing excessive deamination of cytidine residues in nascent reverse tran
164 enter (GC) B cells and are initiated through deamination of cytidine to uracil by activation-induced
177 DH) catalyzes the flavin-dependent oxidative deamination of D-arginine and other D-amino acids to the
179 (A3G) is a cytidine deaminase that catalyzes deamination of deoxycytidine (dC) on single-stranded DNA
180 tion, and gene conversion of Ig genes by the deamination of deoxycytidine, followed by error-prone mi
181 SHM is triggered in activated B cells by deamination of deoxycytosine residues mediated by activa
183 ylase (PyNP) activity indirectly potentiated deamination of dFdC: the natural pyrimidine nucleosides
184 repeat instability: one mediated by cytosine deamination of DNA engaged in R-loops and the other by M
187 roposed to function in DNA demethylation via deamination of either 5-methylcytosine (mC) or TET-oxidi
191 thosine is exclusively generated through the deamination of guanosine by GSDA in A. thaliana, excludi
192 ision repair, C-C bond cleaving reactions or deamination of hmdC to 5-hydroxymethyl-2'-deoxyuridine (
194 m Escherichia coli was shown to catalyze the deamination of isoguanine (2-oxoadenine) to xanthine.
196 dehydrogenase (GDH) catalyzes the oxidative deamination of L-glutamate and, in animals, is extensive
197 carbonylation pathway involves the oxidative deamination of lysine residues to yield a carbonyl compo
200 dehydrogenase (MADH) catalyzes the oxidative deamination of methylamine to formaldehyde and ammonia.
201 difference can be attributed to spontaneous deamination of methylated cytosine residues in the colon
204 suggest that while APOBEC3-mediated cytidine deamination of MMTV may occur, it is not the major means
206 is a membrane flavoenzyme that catalyzes the deamination of neutral and aromatic l-amino acids into a
207 use lethal hypermutation of retroviruses via deamination of newly reverse-transcribed viral DNA.
209 y pseudoknot that is absolutely required for deamination of one particular adenosine in the central d
210 AL) isoforms that catalyze the non-oxidative deamination of Phe to trans-cinnamic acid, the committed
211 ses (CAOs) are responsible for the oxidative deamination of primary amines to their corresponding ald
214 hermotoga maritima was shown to catalyze the deamination of S-adenosylhomocysteine (SAH) to S-inosylh
219 ethionine (SAM) enzyme that catalyzes the C4-deamination of TDP-4-amino-4,6-dideoxyglucose through a
221 encoded by exon 5 (E5) allows very efficient deamination of the AID target regions but greatly impact
222 A study of the mechanism of the oxidative deamination of the N-nitroso-N-acetyl sialyl glycosides
223 restricts its viral targets through cytidine deamination of viral DNA during reverse transcription or
224 Inhibition of HIV replication occurs by both deamination of viral single-stranded DNA and a deaminati
225 cessively on ssDNA, we have established that deaminations of AGC hot motifs occur at a low rate, appr
226 to explain how T. brucei escapes 'wholesale deamination' of its genome while harbouring both enzymes
227 ng either decarboxylation or decarboxylation-deamination on various combinations of aromatic amino ac
231 y transfer data in terms of a model in which deamination polarity occurs as a consequence of Apo3G bi
235 idine deaminase (AID), which catalyzes C-->U deaminations processively on ssDNA, we have established
239 EIL1 binds to 5-hydroxyuracil, the oxidative deamination product of C, in replication protein A-coate
240 thymine and 5-hydroxymethyluracil (i.e., the deamination products of 5mC and 5hmC) when paired with a
242 suggest a model in which APOBEC3B-catalysed deamination provides a chronic source of DNA damage in b
243 se kinetic analysis was used to evaluate the deamination rate of the aminated-methylidene imidazolone
245 ow determined the photoproduct formation and deamination rates for 10 consecutive T=(m)CG CPDs over a
247 ine the influence of nucleosome structure on deamination rates in vivo, we determined the deamination
248 deamination rates in vivo, we determined the deamination rates of CPDs at TCG sites in a stably posit
250 synthesis of coenzyme Q from pABA requires a deamination reaction at position C4 of the benzene ring
251 es, cytidines are converted to uridines by a deamination reaction in the process termed RNA editing.
252 nditions of high ammonia concentration, this deamination reaction is reversible and hence there is co
254 in a C4-amine and provide information on the deamination reaction that takes place when para-aminoben
255 phenylalanine and l-tyrosine, conferring the deamination reaction through either the Friedel-Crafts o
258 ploiting differential kinetics of hydrolytic deamination reactions of cytosine and its naturally occu
260 to determine kinetic parameters of A3Gctd's deamination reactions within a 5'-CCC hot spot sequence.
261 um yields because the excited states undergo deamination reactions, and for all cresols the formation
262 c acid (TCA) cycle intermediate, through two deamination reactions, the first requiring glutaminase (
266 and analysis of the rate of ADAR1 catalyzed deamination revealed similarities and differences in the
267 he observed mutational pattern resembles the deamination signature of cytidine to uridine carried out
268 n to the C > U modifications due to cytosine deamination, so represents a time-dependent process of D
271 of WT AID for motif recognition specificity, deamination spectra, and high deamination processivity.
272 anesulfonate as nucleophile in the oxidative deamination step when the 5-O-triflyl KDN derivative is
273 from the positions of AID-mediated cytidine deamination, suggesting DNA end resection before strand
276 d synergistically modulate CPD formation and deamination that contribute to C to T mutations associat
277 ytosine is prone to conversion to thymine by deamination, the methylation of this cytosine in normal
278 ine-based protection from bisulfite-mediated deamination, thereby confirming sites of 5fC accumulatio
279 tic resolution by tandem hydrodefluorination/deamination, thus giving the corresponding amines with u
281 dyrhizobium sp. strain JS329 is a hydrolytic deamination to form 5-nitrosalicylic acid (5NSA), follow
282 ltaneous enantioselective dehalogenation and deamination to form the corresponding acetophenone deriv
283 ase enzymes, respectively, catalyzes adenine deamination to hypoxanthine with an apparent K(m) of 15.
285 nscription, which could allow for collateral deaminations to occur in genomic DNA similar to the acti
286 ons, both mA3 and hA3G preferentially induce deaminations toward the 5' end of minus-strand viral DNA
288 in MLV particles does not induce detectable deaminations upon infection, its deaminase activity is e
290 agreement with earlier reports, uncatalyzed deamination was found to proceed at very similar rates f
291 knockout mice to determine whether cytidine deamination was important for APOBEC3's anti-MMTV activi
292 methylated cytosine (mC) on DNA, and this mC deamination was proposed to be involved in the demethyla
293 Consistent with the in vitro observations, deamination was slower for one CPD located at an interme
294 of nucleosome structure on CPD formation and deamination, we have developed a circular permutation sy
295 e, all four haplotypes that were active in C deamination were also highly active on methylated C (mC)
297 osomes can modulate both their formation and deamination, which could contribute to the UV mutation h
WebLSDに未収録の専門用語(用法)は "新規対訳" から投稿できます。