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1 much of the remainder of the genome is being demethylated.
2 e to activate Bril when the promoter becomes demethylated.
3 essential PRC2 subunit, upon HBx expression demethylate a CpG dinucleotide located adjacent to NF-ka
5 logous expression of ArsI conferred MAs(III)-demethylating activity and MAs(III) resistance to an ars
6 s a 5-methylcytosine dioxygenase and its DNA demethylating activity has been implicated in pluripoten
8 llular toxicity of 5-azacytidine and its DNA demethylating activity were strongly reduced after hENT1
9 was likely caused by the inhibition of H3K4 demethylating activity, as hypoxia still increased H3K4m
11 ng growth factor beta (TGF-beta) cytokine, a demethylating agent (5-azacytidine), B cell receptor eng
12 st (VDA) nor an HDAC inhibitor (HDACI) nor a demethylating agent (DAC) individually could optimally u
14 omoters of these genes; furthermore, the DNA demethylating agent 5 aza-2'deoxycytidine (5-Aza-dC) ant
16 he HER4-negative BT20 cell line with the DNA demethylating agent 5-aza-2'-deoxycytidine (DAC)-enhance
18 apitulated or enhanced by treatment with the demethylating agent 5-aza-2'-deoxycytidine as well as by
20 and UM-UC13), and exposure to the chromatin demethylating agent 5-aza-2'-deoxycytidine restored HSPA
25 arcinogen-transformed HBECs treated with the demethylating agent 5-aza-2'deoxycytidine revealed miR-1
27 Ha, CaSki, and HeLa cells and treatment with demethylating agent 5-aza-2-deoxycytidine restored DOC2B
29 recapitulated by a co-treatment with the DNA-demethylating agent 5-Aza-C and retinoic acid across var
30 treatment of humanized NSG mice with the DNA-demethylating agent 5-aza-cytidine distinctly enhanced t
31 In response to the chemotherapeutic and DNA-demethylating agent 5-aza-deoxycytidine (5-aza-dC), tran
33 broblasts to nanomolar concentrations of the demethylating agent 5-azacytidine increased basal expres
34 ion of the silenced allele by either the DNA demethylating agent 5-azadeoxycytidine or the SIRT1 inhi
36 f the offspring because treatment with a DNA-demethylating agent alleviated exacerbation of allergic
37 Pure GuaUre-dR was found to be an effective demethylating agent and was able to induce 5azaC-dR type
38 lenic marginal zone lymphoma cell lines to a demethylating agent caused partial reversion of the High
39 treatment of a heterozygous cell line with a demethylating agent further increased the allelic expres
40 version of an adult cell by exposing it to a demethylating agent immediately followed by differentiat
41 Treatment of IDH mutant gliomaspheres with a demethylating agent partially restores insulator functio
43 o a combination of hypoxia, TGF-beta1, and a demethylating agent results in NK cells that express kil
44 ne deacetylase inhibitor entinostat with the demethylating agent vidaza profoundly affected growth of
46 he CHS response in mice treated with the DNA demethylating agent, 5-aza-2'-deoxycytidine, after UVB e
47 l re-expression of ER was achieved using the demethylating agent, 5-azacytidine, and the HDAC inhibit
48 nografts were treated with decitabine, a DNA demethylating agent, and cytarabine, a frontline cytotox
49 ol on Ddo expression, treatment with the DNA-demethylating agent, azacitidine, causes increased mRNA
51 eactivation by 5-aza-2'-deoxycytidine, a DNA demethylating agent, show that DNA methylation occurring
54 derstanding the anti-tumor mechanisms of DNA-demethylating agents and highlight the MDA5/MAVS/IRF7 pa
55 n cancer cells, but not normal cells, by DNA-demethylating agents and histone deacetylase inhibitors
56 if so, novel therapeutic strategies such as demethylating agents and probiotic adjuncts, particularl
57 garding the advantage of aerosol delivery of demethylating agents and the concept of priming tumors f
59 ound that the endothelial cells treated with demethylating agents could significantly increase the ex
62 view, we discuss the clinical development of demethylating agents in hematology, with a focus on azac
64 leukemic LGL survival, and suggest a role of demethylating agents in the treatment of this disorder.
65 ulmonary carcinogenesis and suggest that DNA demethylating agents may be useful for activating miR-48
67 addition, treatment of these leukemias with demethylating agents restored the C/EBPalpha-C/EBPgamma
70 zone lymphoma and optimize therapy by using demethylating agents to reverse the high-methylation phe
74 gene expression is induced by treatment with demethylating agents, may identify novel genes with tumo
75 ls caution against the indiscriminate use of demethylating agents, such as 5-aza-2'-deoxycytidine (5-
76 at were upregulated after treatment with DNA demethylating agents, such as Azacytidine and several na
77 cell lines and inducing resensitizaton with demethylating agents, we aimed to identify consistent me
84 s at putative regulatory regions that are CG-demethylated and activated in the adult brain and that C
87 ents were up-regulated in U251MG cells after demethylating and IFN-gamma treatments, suggesting an ef
88 d to the MMP13 promoter when the -104 CpG is demethylated, and confirmed this binding by chromatin im
89 3 gene in the persisting iT reg cells was as demethylated as the corresponding sequence of naturally
90 e nucleolar rRNA genes are nearly completely demethylated at promoter CGs, whereas silenced genes are
92 uction, Helios(-) FOXP3(+) nTreg clones were demethylated at the FOXP3 Treg-specific demethylated reg
93 rograms at naive-associated genes and became demethylated at the loci of classically defined effector
95 The lysine specific demethylase 1 (LSD1) demethylates at both of these lysine residues and has be
98 s question and determine that <2% of regions demethylated by 5-Aza-CdR treatment assume an open confi
99 In this assay methylated peptides are first demethylated by a KDM, and a protein methyltransferase (
100 Moreover, we find that m(6)Am is selectively demethylated by fat mass and obesity-associated protein
101 erally a transcriptional repression mark, is demethylated by H3K9-specific demethylases, leading to t
102 then targeted two proteins whose genes were demethylated by RG108-estrogen receptor 1 (ESR1) and cyc
105 we found that histone H3 lysines 4 and 9 are demethylated by the lysine-specific demethylase, LSD1 an
106 -resorcin[5 and 6]arenes were quantitatively demethylated by treatment with BBr3 to obtain the corres
107 , respectively), it is also found to 14alpha-demethylate C4-dimethylated lanosterol (V(max) = 0.9 min
110 hl breakdown in Arabidopsis and specifically demethylates Chl catabolites at the level of FCCs in the
111 hritis and systemic lupus erythematosus were demethylated compared to healthy controls and favoured p
112 mice and suggests roles for Tet proteins in demethylating conserved gene enhancers during the phylot
113 xon and TSS200 and a dominant pattern of age-demethylated CpGs at other gene regions, and by overwhel
114 atterns over gene regions for methylated and demethylated CpGs both relate to reduced gene activity d
116 its oxidized derivatives, at the majority of demethylated CpGs, are converted to unmodified cytosines
117 of relevance to the report that selenoneine demethylates CysHgMe, thereby providing a mechanism for
118 CD8 T cells while key effector genes remain demethylated, demonstrating that memory T cells arise fr
120 nfected individuals, CCR5 cis-regions remain demethylated, despite restoration of CD4+ counts (>/=800
121 MJD5 (also called KDM8) has been reported to demethylate dimethylated Lys-36 in histone H3 (H3K36me2)
122 cted circulating copies of beta cell-derived demethylated DNA in serum of mice by quantitative PCR.
124 therapy against this cancer, we used the DNA demethylating drug 5-aza-2'-deoxycytidine (DAC) in an ag
125 rs, and treatment of the cell lines with the demethylating drug 5-aza-2'-deoxycytidine resulted in in
127 Here we show that treatment with the DNA-demethylating drug 5-Aza-deoxycytidine (AZA) restores hi
128 s issue, Weber and coworkers report that DNA-demethylating drugs alter the transcriptional expression
129 Early successes have been made with DNA-demethylating drugs in hematologic malignancies, and eff
130 was detectable for only 2 weeks, whereas DNA-demethylating drugs induced permanent epigenetic reprogr
134 transcription initiation, but how H3K4me3 is demethylated during gene repression is poorly understood
135 ethylated in stem cells and gradually became demethylated during normal B-cell differentiation, sugge
136 , hox genes) is methylated, but the loci are demethylated during zygotic cleavage stages to precisely
137 protein expression correlate with the highly demethylated EBV type III latency program permissive for
139 cally, we found that miR-29b targets the DNA-demethylating enzyme, TET1, for downregulation resulting
140 ment leads to the aberrant expression of DNA demethylating enzymes and locus-specific changes to DNA
142 ne in postmitotic neurons is to functionally demethylate expressed gene bodies while retaining the ro
144 y in urine therefore represents a mixture of demethylated fish-derived MeHg and amalgam-derived inorg
146 ites examined, the -104 CpG was consistently demethylated following treatment of human articular chon
147 Herein, we report the first synthesis of a demethylated form of cholesterol (18,19-di-nor-cholester
151 d a higher proportion of CD4(+) T cells with demethylated Foxp3 and a specific expansion of CD4(+) CD
153 CD127CD25CD45RA Treg cells had a stable TSDR demethylated FOXP3 phenotype after expansion whereas CD4
155 TET2 and EBNA2 function cooperatively to demethylate genes important for EBV-driven B-cell growth
156 ignaling pathways, whereas those enriched in demethylated genes after decitabine treatment included p
159 iana endosperm that are regulated by the DNA-demethylating glycosylase DEMETER, the DNA methyltransfe
161 er molecular analyses demonstrate that JMJD3 demethylates H3K27me3 along the gene bodies, paving the
162 JD3 activates bivalent gene transcription by demethylating H3K27me3 and promoting transcriptional elo
163 D5 (now renamed KDM8), a JmjC family member, demethylates H3K36me2 and is required for cell cycle pro
165 y identifies a crucial function for KDM5A in demethylating H3K4 to allow ZMYND8-NuRD to operate withi
167 In this study, we show that KDM5B, which demethylates H3K4me3, plays an integral role in regulati
168 of KDM4A-D histone demethylases selectively demethylates H3K9 and H3K36 and is implicated in key cel
173 ethylase 1) and Lid (little imaginal discs), demethylate histone H3 at Lys 4 (H3K4), a residue whose
174 specific demethylase 1 (LSD1; ref. 5), which demethylates histone H3 on Lys 4 or Lys 9 (H3K4/K9), is
175 (lysine [K]-specific demethylase 5A), which demethylates histone H3 on Lys4 (H3K4), as a pRB-interac
176 e-specific demethylase 1 (Lsd1/KDM1a), which demethylates histone H3 on Lys4 or Lys9 (H3K4/K9), is an
178 breast cancer cell invasion and apoptosis by demethylating histone and the non-histone protein p53, r
179 tones, indicating that this HDM is unable to demethylate histones during steady-state conditions.
181 that inflammasome-related genes are rapidly demethylated in both monocyte-to-macrophage differentiat
182 Dnmt3b activity, the majority of which were demethylated in Dnmt3b-/- lymphomas, but not in Dnmt3b-/
184 , the Pdcd1 regulatory region was completely demethylated in exhausted CD8(+) T cells and remained un
186 e, also upregulated in HBV-mediated HCCs, is demethylated in liver tumors at CpG dinucleotides flanki
187 rich Foxp3 intronic cis-element specifically demethylated in mature Tregs, helps maintain immune home
188 enhancer region at -5.8 kb was significantly demethylated in OA samples compared with control samples
190 P-responsive element site, was significantly demethylated in patient-derived compared with normal con
192 ggested that the paternal genome is actively demethylated in the zygote while the maternal genome und
204 (1)H and (13)C NMR of both EAPB0203 and its demethylated metabolite (EAPB0202) to the corresponding
205 -specific demethylase 1, also known as KDM1) demethylates mono- and dimethylated H3K4 in peptide subs
206 y important roles in gene expression through demethylating mono-, di-, or trimethylated lysines.
207 ation assays, which demonstrated that HR can demethylate monomethylated or dimethylated histone H3 ly
208 A methylation, we examined IAP expression in demethylated mouse embryonic stem cells (mESCs) and epib
209 resents a molecular switch as methylated and demethylated MTA1 nucleate NuRD or NURF complexes with o
210 is required for the NuRD repressor complex, demethylated MTA1 recognizes the bivalent histone H3K4-A
211 s pretreatment with Escherichia coli AlkB to demethylate N(1)-methyladenosine (m(1)A), N(3)-methylcyt
216 n within the FOXP3 locus that is selectively demethylated only in bona fide Tregs (Treg-specific deme
217 which uncovered hundreds of loci that became demethylated only when hENT1-mediated transport was acti
218 mediated stimulation of Sox2 expression, and demethylating p53 protein and consequently, modulating i
221 Subsequent collisional activation of the demethylated PC anions produces abundant fatty acid carb
222 intenance of PD-1 surface expression and the demethylated PD-1 promoter were not a result of residual
223 n increased accumulation of less stretchable demethylated pectin in the apical wall, whereas MeSA did
224 hen exposed to TAC and maintenance of a TSDR demethylated phenotype following in vitro expansion.
226 MPPs commit to pre-B cells, a predominantly demethylating phenotype ensues, with 79% of the 2966 dif
230 yl-l-methionine, the transmethylation of the demethylated precursor of vitamin K is strictly dependen
231 emethylation is occurring in the culture and demethylates preferentially the lighter Hg isotopes of M
234 e cleavage of the urea side chain of the IPU demethylated products; a distinct aniline dioxygenase ge
236 Our results indicate that only a minority of demethylated promoters are associated with nucleosome re
237 l type and silent in the other tend to share demethylated promoters, while methylation differences be
239 Recombinant CYP82E4, CYP82E5v2, and CYP82E10 demethylated (R)-nicotine 3-, 10-, and 10-fold faster th
240 se 1 (LSD1) upregulates hypoxia responses by demethylating RACK1 protein, a component of hypoxia-indu
241 -1/0 pituitary cells with a combination of a demethylating reagent and a histone deacetylase inhibito
243 by epigenetic analysis of the Treg-specific demethylated region (TSDR) and the frequency of the IFN-
244 of demethylation of the Foxp3 Treg-specific demethylated region (TSDR) in circulating CD4(+) T cells
245 epigenetic differences in the Treg-specific demethylated region (TSDR) of Foxp3 and were more stable
246 Demethylation analysis of the Treg-specific demethylated region (TSDR) provides a more accurate asso
247 n, or methylation state of the Treg-specific demethylated region (TSDR) within the FOXP3 locus associ
249 ds on DNA demethylation at the Treg-specific demethylated region (TSDR), a conserved, CpG-rich region
250 hin the FOXP3 gene, called the Treg-specific demethylated region (TSDR), is considered the hallmark o
251 d by a completely demethylated Treg-specific demethylated region and showed alloantigen-specific supp
252 methylated regulatory T cell (Treg)-specific demethylated region Foxp3 gene are considered natural Tr
253 3 expression are characterized by a specific demethylated region in the FOXP3 gene (Treg-specific dem
254 By using demethylation of the Treg-specific demethylated region in the FOXP3 gene as a marker for nT
256 cells with a demethylated Treg-cell-specific demethylated region in the Foxp3 locus downregulated Fox
257 cells retained a demethylated Treg-specific demethylated region in the FOXP3 promoter, maintained ac
258 Assessment of regulatory T cell-specific demethylated region methylation status in 1-month biopsy
261 rying highly demethylated Treg cell-specific demethylated region that configures committed Tregs stab
263 hylation of the CpG islands in Treg-specific demethylated region, CTLA-4 exon 2, and glucocorticoid-i
264 were demethylated at the FOXP3 Treg-specific demethylated region, indicative of Treg lineage stabilit
265 lated only in bona fide Tregs (Treg-specific demethylated region, TSDR) represents a reliable method
269 ion factors, are frequently localized in the demethylated regions of the promoters of numerous ripeni
271 +)CD127(-)FOXP3(+) T cells with a persistent demethylated regulatory T cell (Treg)-specific demethyla
273 pre-programmed elements, and implicate their demethylated state in the maintenance of open chromatin
275 ts also maintained their effector-associated demethylated status but acquired TEM-associated programs
276 panded with TAC, the marked loss of the TSDR demethylated status highlights the potential for loss of
278 ing important biomarker classes, such as C10 demethylated terpanes, alphaalphaalpha-steranes, and mon
280 and the Msk1 kinase, which can respectively demethylate the repressive H3K9me3 mark and phosphorylat
281 cate the presence of an enzyme activity that demethylates the C13(2)-carboxymethyl group present at t
283 e levels of H3K56me3, suggesting that dKDM4A demethylates this heterochromatic mark to facilitate rep
284 r elements that are evolutionarily young are demethylated to a milder extent compared to older elemen
286 the Helios-positive subset, carrying highly demethylated Treg cell-specific demethylated region that
288 (-) nTreg were characterized by a completely demethylated Treg-specific demethylated region and showe
290 T cells (Tconv), and possess a predominantly demethylated Treg-specific demethylated region of the FO
292 n 2 (RBP2; also called JARID1A or KDM5A) can demethylate tri- and dimethylated lysine 4 in histone H3
293 found that JMJD3 and KIAA1718 collaborate to demethylate trimethylated H3K27 (H3K27me3) on a subset o
296 n 5,168 CpGs (39% age-methylated and 61% age-demethylated) which were characterized by high concentra
297 thoxy-substituted benzo[c]phenanthrenes were demethylated with BBr3 and oxidized to the o-quinones wi
299 We hypothesize that fish-derived MeHg is demethylated within the body, causing mass-dependent fra
300 on of adipogenesis and osteoblastogenesis by demethylating Wnt10a gene and upregulating its expressio
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