ライフサイエンスコーパス: denitrificans

1 from Rhodobacter sphaeroides and Paracoccus denitrificans).

2 ria, Rhodobacter sphaeroides, and Paracoccus denitrificans).

3 ng hypoxia, as does the bacterium Paracoccus denitrificans.

4 evious work with the oxidase from Paracoccus denitrificans.

5 le from those of the enzyme isolated from P. denitrificans.

6 rom the type strain (ATCC 33394) of Kingella denitrificans.

7 tes in COX of bovine heart and of Paracoccus denitrificans.

8 n cytochrome c oxidase (COX) from Paracoccus denitrificans.

9 oeae and may serve a similar function for K. denitrificans.

10 the native CuA center in COX from Paracoccus denitrificans.

11 s has been studied extensively in Paracoccus denitrificans.

12 trous oxide reductase (N2OR) from Paracoccus denitrificans.

13 in was extracted from cultures of Paracoccus denitrificans.

14 ns from cytochromes c-551i and c-550 from P. denitrificans.

15 for the homologous expression of MauG in P. denitrificans.

16 to the cytochrome c peroxidase of Paracoccus denitrificans.

17 e CuA center of cytochrome c oxidase from P. denitrificans.

18 ion by Rhodobacter capsulatus and Paracoccus denitrificans.

19 e 1occ) and of the soil bacterium Paracoccus denitrificans (1arl) include a dicopper center (CuA), ma

20 homology to CobI from the aerobe Pseudomonas denitrificans (29% identity; 51% conservation obtained b

21 ed that anaerobically grown Sterolibacterium denitrificans, a beta-proteobacterium, adopts an oxygena

22 Accordingly, S. denitrificans accessed cholesterol by direction adhesion

23 interacts less strongly with the metal in P. denitrificans amicyanin than in Paracoccus versutus amic

24 he native type I copper center of Paracoccus denitrificans amicyanin was replaced with the correspond

25 explore the denitrification phenotypes of P. denitrificans and A. xylosoxidans at a range of extracel

26 bodies raised against subunits of Paracoccus denitrificans and against synthetic peptides predicted f

27 s of the cytochrome oxidases from Paracoccus denitrificans and bovine.

28 In this study, Thiomicrospira denitrificans and Candidatus Arcobacter sulfidicus, two

29 Crystal structures of the Thiobacillus denitrificans and Cupriavidus metallidurans BPHs disclos

30 Cytochrome aa3 from Paracoccus denitrificans and cytochrome ba3 from Thermus thermophil

31 cytochrome c peroxidase (CCP) of Paracoccus denitrificans and cytochromes c.

32 ogenases has previously been reported for T. denitrificans and hydrogen oxidation appears to be criti

33 This is similar to COX from Paracoccus denitrificans and is in contrast to the bovine oxidase,

34 uctural and biochemical analyses of Kingella denitrificans and Neisseria gonorrhoeae HpuA mutants, al

35 roides is specifically related to Paracoccus denitrificans and Rc. gelatinosa is related to Ps. cepac

36 l inhibitor of the F1FO-ATPase of Paracoccus denitrificans and related alpha-proteobacteria.

37 en isotope fractionation was observed for T. denitrificans and S. denitrificans, indicating a prefere

38 eriments with the model strains Thiobacillus denitrificans and Sulfurimonas denitrificans, both pathw

39 munoprecipitation of labeled membranes of P. denitrificans and T. thermophilus established photoaffin

40 ents from the aa3-type oxidase of Parachccus denitrificans and the caa3-type oxidase of Bacillus subt

41 bacterial counterpart (NDH-1) in Paracoccus denitrificans and Thermus thermophilus HB-8 consists of

42 n bovine oxidase (1542 and 1314 cm(-1) in P. denitrificans) and a positive band at approximately 1519

43 on have been found-an aerobic pathway (in P. denitrificans) and an anaerobic pathway (in P. shermanii

44 tures of Rhodobacter sphaeroides, Paracoccus denitrificans, and bovine CcO derived by crystallography

45 terium related to R. sphaeroides, Paracoccus denitrificans, and is lethal to R. sphaeroides.

46 thetic bacteria, namely, Rb. sphaeroides, P. denitrificans, and Rhodospirillum rubrum.

47 Candida glabrata and Atp12p from Paracoccus denitrificans, and we show that some features of the Wan

48 A structural features previously found in P. denitrificans are present also in the 5S RNA of Rb. spha

49 Control strains were Paracoccus denitrificans ATCC 17741(T), P. versutus ATCC 25364(T),

50 The complete genome sequence of Thiobacillus denitrificans ATCC 25259 is the first to become availabl

51 Rhodobacter sphaeroides f. sp. denitrificans biotin sulfoxide reductase (BSOR) catalyze

52 Rhodobacter sphaeroides f. sp. denitrificans biotin sulfoxide reductase catalyzes the r

53 Rhodobacter sphaeroides f. sp. denitrificans biotin sulfoxide reductase has been hetero

54 Thiobacillus denitrificans and Sulfurimonas denitrificans, both pathways resulted in a similar small

55 of the gamma subunit of the F1-ATPase of P. denitrificans by a hitherto unknown quaternary structure

56 ric cytochrome bc(1) complex from Paracoccus denitrificans by characterizing the kinetics of inhibito

57 terologous inhibition of the F1-ATPase of P. denitrificans by the mitochondrial IF1 supported both th

58 apers, cytochrome c peroxidase of Paracoccus denitrificans can accommodate horse cytochrome c and Par

59 It is proposed that P. denitrificans CcmG acts in vivo to reduce protein-disulp

60 Cloning and sequencing of the Paracoccus denitrificans ccmG gene indicates that it codes for a pe

61 S. denitrificans cells did not produce biosurfactants upon

62 nce of expression of active shewasin D in S. denitrificans cells, confirming its activity at acidic p

63 a model of the previously described human-P. denitrificans chimeric ETF protein, it is possible to id

64 iously reported hybridization patterns of K. denitrificans chromosomal DNA seen using a Neisseria gon

65 rial complex, we establish the utility of P. denitrificans complex I as a model system for the mammal

66 NADH-quinone oxidoreductase from Paracoccus denitrificans consists of 14 subunits (Nqo1-14) and cont

67 quinone oxidoreductase (NDH-1) of Paracoccus denitrificans consists of at least 14 unlike subunits (d

68 Paracoccus denitrificans contains an unusual arrangement whereby tw

69 X-ray structure reported for the complete P. denitrificans cytochrome aa3 molecule and the engineered

70 anges in the P(M) intermediate of Paracoccus denitrificans cytochrome c oxidase have been investigate

71 cture of the P(M) intermediate of Paracoccus denitrificans cytochrome c oxidase was investigated by p

72 and F intermediates of bovine and Paracoccus denitrificans cytochrome c oxidase were investigated by

73 Paracoccus denitrificans cytochrome C550 is expressed as a periplas

74 Moreover, S. denitrificans did not produce extracellular catabolic en

75 disproportionation reaction catalyzed by P. denitrificans electron transfer flavoprotein-ubiquinone

76 Notably, P. denitrificans emits approximately 40% of NO(3) (-) consu

77 The cbbL cbbS and cbbM genes of Thiobacillus denitrificans, encoding form I and form II ribulose 1,5-

78 The form I T. denitrificans enzyme possessed a very low substrate spec

79 educed amino acid sequence of the form II T. denitrificans enzyme resembled those of other form II Ru

80 sequence and structures of the human and P. denitrificans enzymes as models, a detailed sequence ali

81 ssion system provided high levels of both T. denitrificans enzymes, each of which was highly purified

82 thionine for T244 in the alpha subunit of P. denitrificans ETF and expressed the mutant ETF in Escher

83 transfer reaction between either human or P. denitrificans ETF and MCAD demonstrates that the human E

84 in adenine dinucleotide (FAD) cofactor in P. denitrificans ETF gave two distributions of distances: a

85 Paracoccus denitrificans ETF has the identical function, shares the

86 ximately 10 mequiv) ionic strength, while P. denitrificans ETF is a better electron acceptor at highe

87 the human structure, the structure of the P. denitrificans ETF is comprised of three distinct domains

88 nd P. denitrificans ETFs reveals that the P. denitrificans ETF is more negatively charged.

89 f ionic differences between the human and P. denitrificans ETF onto the structure identifies a surfac

90 calculated using the crystal structure of P. denitrificans ETF, which agrees with the major component

91 haracterized, and compared with wild type P. denitrificans ETF.

92 alphaT244 has the same structural role in P. denitrificans ETF.

93 The X-ray crystal structures of human and P. denitrificans ETFs are very similar.

94 mensional structures of human and Paracoccus denitrificans ETFs determined by X-ray crystallography i

95 electrostatic potentials of the human and P. denitrificans ETFs reveals that the P. denitrificans ETF

96 ith the model denitrifying strain Paracoccus denitrificans further shows that ligand-enhanced chemica

97 oprotein amine dehydrogenase from Paracoccus denitrificans has been determined at 2.05-A resolution.

98 eductase from Rhodobacter sphaeroides f. sp. denitrificans has been expressed in Escherichia coli BL2

99 in methylamine dehydrogenase from Paracoccus denitrificans has been refined at 1.75 A resolution util

100 he equivalent tryptophan (W121 in Paracoccus denitrificans) has been identified as the "electron entr

101 quinone oxidoreductase (SQR) from Paracoccus denitrificans have been undertaken in the purified and m

102 both Saccharomyces cerevisiae and Paracoccus denitrificans have indicated that mutations at this site

103 gands in supporting the growth of Paracoccus denitrificans in a low-iron environment and the ability

104 cific SBP AztC from the bacterium Paracoccus denitrificans in the zinc-bound and apo-states.

105 ion was observed for T. denitrificans and S. denitrificans, indicating a preferential incorporation o

106 se from the alpha-proteobacterium Paracoccus denitrificans, inhibited by its natural regulatory zeta-

107 Amicyanin from Paracoccus denitrificans is a type 1 copper protein with three stro

108 in the beta-proteobacterium Sterolibacterium denitrificans is catalyzed by an unprecedented enzyme th

109 quinone oxidoreductase (NDH-1) of Paracoccus denitrificans is composed of 14 different subunits (desi

110 quinone oxidoreductase (NDH-1) of Paracoccus denitrificans is composed of 14 different subunits (Nqo1

111 quinone oxidoreductase (NDH-1) of Paracoccus denitrificans is composed of at least 14 different subun

112 quinone oxidoreductase (NDH-1) of Paracoccus denitrificans is composed of at least 14 subunits (NQO1-

113 quinone oxidoreductase (NDH-1) of Paracoccus denitrificans is composed of at least 14 unlike subunits

114 We demonstrate that NarK from Paracoccus denitrificans is expressed as a fusion of two NarK-like

115 Thiobacillus denitrificans is one of the few known obligate chemolith

116 odel for nitrate and nitrite transport in P. denitrificans is proposed.

117 P. denitrificans is the first system described in which mut

118 p(beta)(57) and Trp(beta)(108) in Paracoccus denitrificans MADH).

119 e methylamine utilization gene cluster of P. denitrificans, mauFBEDACJG, were placed under the regula

120 In the cholate-treated NDH-1-enriched P. denitrificans membranes, we observed EPR signals arising

121 Paracoccus denitrificans methylamine dehydrogenase (MADH) is an enz

122 teria containing type-4 pili, many of the K. denitrificans N variants still produce pilin, and some s

123 lfur, correspond to those of the isolated P. denitrificans NADH-dehydrogenase complex.

124 of NQO1 through -6 of the membrane-bound P. denitrificans NDH-1 has been determined by radioimmunoas

125 f the 7 subunits (NQO1-6 and NQO9) of the P. denitrificans NDH-1 in the membranes were investigated u

126 We demonstrated that in the Paracoccus denitrificans NDH-1 subunit, Nqo7 (ND3) directly interac

127 iometry of the peripheral subunits of the P. denitrificans NDH-1 was completed by radioimmunological

128 O4, -5, and -6 subunits in membrane-bound P. denitrificans NDH-1 were extracted by treatment at alkal

129 e subunits homologous to those of Paracoccus denitrificans NDH-1, respectively, and are arranged in t

130 properties of the NQO9 subunit of Paracoccus denitrificans NDH-1, which is predicted to contain 2x[4F

131 e NQO1 through -6 subunits per mol of the P. denitrificans NDH-1.

132 ated the total number of cofactors in the P. denitrificans NDH-1; the enzyme complex contains one mol

133 The enzyme from Paracoccus denitrificans (NorBC) contains two subunits; NorB compri

134 ry similar to those of N1a cluster in the P. denitrificans NQO2 subunit.

135 or the homologous D477A mutant of Paracoccus denitrificans or for bovine COX (K(d) = 1-3 microM).

136 on haem-iron as a cofactor (e.g. Paracoccus denitrificans) or a Nir that is solely dependent on copp

137 This includes H456A, where in the P. denitrificans oxidase a leucine residue substituted for

138 is the equivalent of residue E78II of the P. denitrificans oxidase).

139 the known processing site of the Paracoccus denitrificans oxidase, does not produce the same enzyme

140 For both bovine and P. denitrificans oxidase, the major features of the IR diff

141 nhibition in a model denitrifier, Paracoccus denitrificans Pd1222.

142 Kingella denitrificans possess type-4 pili, and the type strain,

143 Both form I and form II RubisCO from T. denitrificans possessed high KCO2 values, suggesting tha

144 Endogenous T. denitrificans promoters were shown to function in R. sph

145 We separated S. denitrificans proteins into four fractions, namely the o

146 tructure of the related MADH from Paracoccus denitrificans recently reported.

147 The NO reductase from Paracoccus denitrificans reduces NO to N2O (2NO + 2H(+) + 2e(-) -->

148 ylamine dehydrogenase (MADH) from Paracoccus denitrificans requires four genes in addition to those t

149 ylamine dehydrogenase (MADH) from Paracoccus denitrificans requires four genes in addition to those t

150 Expression of active MADH from P. denitrificans requires four other genes in addition to t

151 on the cytochrome c oxidase from Paracoccus denitrificans revealed an unexpected coupling between th

152 uce this compound in recombinant Pseudomonas denitrificans revealed that 3-HP is consumed by this mic

153 rystallographic structure of the Pseudomonas denitrificans S-adenosyl-L-methionine-dependent uroporph

154 mmaproteobacterial methanotroph Methylomonas denitrificans sp. nov. strain FJG1(T) couples methane ox

155 anotrophs as well as the pxmABC operon in M. denitrificans sp. nov. strain FJG1(T) in response to hyp

156 y such as nitrate reductase NarGH serving M. denitrificans sp. nov. strain FJG1(T) to conserve energy

157 S. denitrificans spheroplasts exhibited a significantly hig

158 id sequence of cytochrome c550 of Paracoccus denitrificans strain LMD 52.44 was determined and showed

159 conserved in Pichia pastoris and Paracoccus denitrificans, suggesting that they are functionally sig

160 lement deletions in both narK and nasA in P. denitrificans, suggesting that, while these proteins are

161 In Paracoccus denitrificans, the pathway-specific two-component regula

162 her with a functional interaction between P. denitrificans TIR and MyD88 visualized in a co-immunopre

163 The three-dimensional fold of Paracoccus denitrificans TIR is identical to that observed for the

164 evidence for the capability of Thiobacillus denitrificans to anaerobically oxidize a putatively nano

165 hane-acclimated sludge (including Paracoccus denitrificans) to facilitate electron transfer by provid

166 ewasin D, the pepsin homolog from Shewanella denitrificans, to gain further insight into this group o

167 onine 244 in the alpha subunit of Paracoccus denitrificans transfer flavoprotein (ETF) lies seven res

168 he biological reduction of N2O by Paracoccus denitrificans using methanol as a carbon/electron source

169 transfer flavoprotein (ETF) from Paracoccus denitrificans was determined and refined to an R-factor

170 I copper protein, amicyanin from Paracoccus denitrificans was determined at 1.8 A resolution.

171 n situ hybridization analyses showed that P. denitrificans was dominant (>50%) after 6 months of expe

172 d BchZ from the purple bacterium Roseobacter denitrificans was trapped in the presence of the ATP tra

173 A DeltacbiX mutant in P. denitrificans was unable to respire anaerobically on nit

174 cture of a new cluster 9 SBP from Paracoccus denitrificans we have called AztC.

175 tive accessory factor (AztD) from Paracoccus denitrificans, we have analyzed its transcriptional regu

176 os taurus) and from the bacterium Paracoccus denitrificans, we show that four protons are pumped for

177 The F1-ATPase and F1-zeta models of P. denitrificans were supported by cross-linking, limited p

178 invasive Kingella species, K. oralis and K. denitrificans, were found to be noncytotoxic and to lack

179 rved in cytochrome c oxidase from Paracoccus denitrificans, were similarly associated with the heme A

180 ch as Rhodobacter sphaeroides and Paracoccus denitrificans, which contain an additional mitochondrial

181 in from the marine proteobactrium Shewanella denitrificans, which exhibits an innate dimeric structur

182 inone oxidoreductase (NDH-1) from Paracoccus denitrificans, which is composed of the NQO1 (50 kDa) an

183 and feature analysis of the AAP Roseobacter denitrificans, which reveal clues to its physiology.

184 Human and Paracoccus denitrificans wild-type electron transfer flavoproteins

185 Ultimately, the genome sequence of T. denitrificans will enable elucidation of the mechanisms

186 e I copper protein amicyanin from Paracoccus denitrificans with cobalt.

187 Expression in Paracoccus denitrificans yielded no holoprotein.

188 revealed by the structure of the Paracoccus denitrificans zeta-subunit in complex with ADP.