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1 xy-2'-deoxyguanosine and 8,5'-cyclopurine-2'-deoxynucleosides.
2 riction by SAMHD1 was rescued by addition of deoxynucleosides.
3 tics and product profile of QM reaction with deoxynucleosides.
4 e and thus explaining the specificity for 2'-deoxynucleosides.
5 and class II enzymes are highly specific for deoxynucleosides.
6 ing deoxynucleoside triphosphates (dNTPs) to deoxynucleosides.
7 partially overcome by addition of exogenous deoxynucleosides.
8 was alleviated by the addition of exogenous deoxynucleosides.
9 (4)-epsilon-Cyt)] and their corresponding 2'-deoxynucleosides.
10 ates for oxidation than the corresponding 2'-deoxynucleosides.
13 tudies carried out on the AFB-FAPY bases and deoxynucleoside 3',5'-dibutyrates now establish that the
15 ith these modifications, coupling of each 2'-deoxynucleoside 3'-phosphoramidite to the growing oligod
16 eaction, boron-modified nucleotides, i.e. 2'-deoxynucleoside 5'-alpha-[P-borano]-triphosphates, are i
18 (RNR) converts nucleoside 5'-diphosphates to deoxynucleoside 5'-diphosphates and is expressed under i
21 ting CD4(+) T cells by reducing the cellular deoxynucleoside 5'-triphosphate (dNTP) concentration to
22 onding distance to the bases of the incoming deoxynucleoside 5'-triphosphate (dNTP), the terminal pri
24 at manganese increases the rate constant for deoxynucleoside 5'-triphosphate insertion compared to ma
25 ns required for the reaction of the incoming deoxynucleoside 5'-triphosphate with the 3'-hydroxyl in
26 duction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates and uses coenzyme B12,
27 mer extension reaction utilizing 5'-amino-5'-deoxynucleoside 5'-triphosphates generates polynucleotid
30 he incorporation of benzimidazole-derived 2'-deoxynucleoside-5'-O-triphosphates ( BENZI: TP and BIM:
31 total six crystal structures of modified 2'-deoxynucleoside-5'-O-triphosphates (dNTPs) carrying modi
32 sized base-modified benzimidazole-derived 2'-deoxynucleoside-5'-O-triphosphates on DNA polymerases wh
33 iphosphate (dSpTP) and guanidinohydantoin-2'-deoxynucleoside-5'-triphosphate (dGhTP) are reported.
34 riphosphate lesions spiroiminodihydantoin-2'-deoxynucleoside-5'-triphosphate (dSpTP) and guanidinohyd
35 back regulatory control by the physiological deoxynucleoside-5'-triphosphate dTTP, we examined the ef
36 ) plays a critical role in the production of deoxynucleoside-5'-triphosphates (dNTPs), the building b
38 ant increases in the oxidatively damaged DNA deoxynucleoside 8-hydroxydeoxyguanosine, with the degree
39 chromatographic analysis of DNA digested to deoxynucleosides, about 60% of the Wilms tumors were fou
40 rly, Vpx-containing virus-like particles and deoxynucleosides added to the cells more than 24 h posti
42 ionic acid (BODIPY FL) was used to label the deoxynucleoside adducts N-(2'-deoxyguanosine-8-yl)-4-ami
44 linked DNA returned primarily the unmodified deoxynucleosides, along with 1-[N3-deoxycytidyl]-2-[N1-d
45 e recently reported that in the last step, L-deoxynucleoside analog diphosphates are phosphorylated b
46 ts attributed favorable phosphorylation of L-deoxynucleoside analog diphosphates by PGK to difference
47 mutations on the phosphorylation of L- and D-deoxynucleoside analog diphosphates was different from t
48 ted by 3-phosphoglycerate kinase, whereas, D-deoxynucleoside analog diphosphates were phosphorylated
49 explain the preference of PGK for L- over D-deoxynucleoside analog diphosphates, the kinetics of the
51 fluorescence of a set of four benzo-expanded deoxynucleoside analogs (xDNA) that maintain Watson-Cric
53 "lethal mutagenesis" driven by the class of deoxynucleoside analogs represented by 5-OH-dC could pro
54 y, several L- and D-configuration pyrimidine deoxynucleoside analogs were found to be potent antivira
55 Fd4C, L-FMAU, and L-ddC were compared with D-deoxynucleoside analogs, AraC, dFdC, and D-FMAU, and D-d
57 e in DMSO/THF gave the respective 2'- and 3'-deoxynucleoside analogues with beta-D-threo configuratio
58 ry of potent antiviral agents based on novel deoxynucleoside analogues with unusual bicyclic base moi
59 es of this enzyme and to study the effect of deoxynucleoside analogues, we have isolated and partiall
62 catalyzes the hydrolysis of all dNTPs to the deoxynucleoside and tripolyphosphate, which effectively
63 he results define the acidity of oxopropenyl deoxynucleosides and highlight its importance to their r
65 aced incorporation of (15)N into tryptophan, deoxynucleosides and pheophytin derived from chlorophyll
66 6-[chloro (5, 63%) or bromo (6, 80%)]purine deoxynucleosides, and 2',3',5'-tri-O-acetyladenosine (8)
69 ivation parameters for the degradation of 2'-deoxynucleosides at 25 degrees C were determined by extr
70 '-deoxyadenosine, 4-methylbenzimidazole beta-deoxynucleoside (B), and 9-methyl-1H-imidazo[4,5-b]pyrid
73 We have focused our attention on the use of deoxynucleoside building blocks bearing non-natural base
74 specificity of the class I enzyme for purine deoxynucleosides can be traced to a loop (residues 48-62
75 es, which accept either purine or pyrimidine deoxynucleosides, class I enzymes are specific for purin
77 ase pairing, base stacking, or C2'-endo/anti deoxynucleoside conformations are perturbed significantl
83 sugar chloride in a nonpolar solvent give 2'-deoxynucleoside derivatives with N9 regiochemistry and e
84 des, 3'-O-methyl-substituted nucleosides, 3'-deoxynucleosides, derivatives with 4'-C-azido substituti
86 RB69 DNA polymerase and have shown that the deoxynucleoside diphosphate can be incorporated, in cont
89 of all the NTPs, has a low affinity for the deoxynucleoside diphosphates and cannot generate the dNT
90 le for converting nucleoside diphosphates to deoxynucleoside diphosphates, ensuring a balanced supply
95 and in vivo, CpG DNA containing unnatural 3'-deoxynucleoside either within the CpG-dinucleotide or ad
98 f thymidines in A5 tracts by difluorotoluene deoxynucleoside (F), a non-polar molecule of the same si
99 e critical for phosphorylation of endogenous deoxynucleosides for DNA synthesis and exogenous nucleos
100 lication on encountering these pro-mutagenic deoxynucleosides four steps ahead of the primer-template
106 ence properties of the purine and pyrimidine deoxynucleosides in organic solvents in the presence of
108 effect of 3'-deoxy-2'-5'-ribonucleoside (3'-deoxynucleoside) incorporation into CpG DNA on the immun
109 RCA1 mutations to repair 8,5'-cyclopurine-2'-deoxynucleosides indicates the involvement of BRCA1 in n
114 DNA shuffling of Drosophila melanogaster 2'-deoxynucleoside kinase, followed by FACS analysis, yield
120 s potential terminators: 4-methylindole beta-deoxynucleoside (M), 1-naphthyl alpha-deoxynucleoside (N
122 eoxycytidine (dC), we hypothesized that: (1) deoxynucleosides might be the major active agents and (2
125 is of all of the products indicated that the deoxynucleoside monophosphate incorporated "opposite" Pd
126 slippage and dNTP stabilization followed by deoxynucleoside monophosphate incorporation and extensio
127 it is also found that transcripts containing deoxynucleoside monophosphates (dNMPs) are more poorly e
128 Because we observed rapid catabolism of the deoxynucleoside monophosphates to deoxythymidine (dT) an
129 e beta-deoxynucleoside (M), 1-naphthyl alpha-deoxynucleoside (N) and 1-pyrenyl alpha-deoxynucleoside
130 ent and hydrolysis of the modified DNA to 2'-deoxynucleosides, N(2)-BPDE-dG adducts formed at the [(1
132 The oxidized lesions observed include the 2'-deoxynucleosides of 8-oxo-7,8-dihydroguanine (dOG), spir
133 nst varicella-zoster virus (VZV) shown by 2'-deoxynucleosides of furo[2,3-d]pyrimidin-2(3H)-one and r
136 thesized and used in the preparation of four deoxynucleoside phosphoramidites 28 and 65-67, plus the
138 ch of seven contiguous 3',5'-linked oligo-2'-deoxynucleoside phosphorothioate linkages in the center
139 thioate linkages gives 2',5'-linked oligo-3'-deoxynucleoside phosphorothioate ODNs that exhibit signi
142 able reactions at the C-2 position of purine deoxynucleosides proceed with less sensitivity to the li
143 its dA N1 adduct yield a similar profile of deoxynucleoside products when treated with an equimolar
145 and 9-methyl-1H-imidazo[4,5-b]pyridine beta-deoxynucleoside (Q), were used to examine the importance
146 oxycytidine kinase (dCK) is to phosphorylate deoxynucleosides required for DNA synthesis, with the ex
147 he 3'-hydroxyl group from potent anti-VZV 2'-deoxynucleosides results in loss of the VZV activity, bu
150 e NO.-induced deamination rate constants for deoxynucleosides, single- and double-stranded oligonucle
152 INTERPRETATION: Our studies demonstrate that deoxynucleoside substrate enhancement is a novel therapy
158 modified bases including 8,5'-cyclopurine-2'-deoxynucleoside tandem lesions were identified and quant
160 beta was completely antagonized by providing deoxynucleosides to bypass the block in ribonucleotide r
162 hosphorolysis in 6-oxypurine nucleosides and deoxynucleosides to form purine and alpha-D-phosphorylat
164 ly protected 5'-O-(4, 4'-dimethoxytrityl)-2'-deoxynucleosides to yield 3'-O-phosphinoamidite reactive
166 the 110-to-115 loop region, which may affect deoxynucleoside triphosphate (dNTP) binding and polymera
167 upport catalysis, and Ca(2+), which supports deoxynucleoside triphosphate (dNTP) binding but not cata
169 er of the HBV reverse transcriptase (RT)-DNA-deoxynucleoside triphosphate (dNTP) complex, based on th
171 onocytic cells by reducing the intracellular deoxynucleoside triphosphate (dNTP) concentrations.
172 Analogues were examined both as incoming deoxynucleoside triphosphate (dNTP) derivatives and as t
173 f methionine synthase activity, resulting in deoxynucleoside triphosphate (dNTP) imbalance, increased
176 Here, we investigated the pre-steady-state deoxynucleoside triphosphate (dNTP) incorporation kineti
177 can be explained by decreased sensitivity to deoxynucleoside triphosphate (dNTP) inhibition of the nu
183 not contact the DNA template or the incoming deoxynucleoside triphosphate (dNTP) substrate, is locate
185 zing the template-directed polymerization of deoxynucleoside triphosphate (dNTP) substrates onto the
187 anscriptase with a DNA template:primer and a deoxynucleoside triphosphate (dNTP), and the crystal str
188 a dideoxy-terminated primer and an incoming deoxynucleoside triphosphate (dNTP), does not form the c
190 h the catalytic residues of RT, the incoming deoxynucleoside triphosphate (dNTP), or the primer-templ
191 in reverse transcriptase (RT) that alter the deoxynucleoside triphosphate (dNTP)-binding pocket, incl
192 ast to previous suggestions that Dpo4 uses a deoxynucleoside triphosphate (dNTP)-stabilized misalignm
196 ts of the purine substrates ADP and GDP, the deoxynucleoside triphosphate allosteric effectors dGTP a
199 m our laboratory have shown that the natural deoxynucleoside triphosphate and the NNRTI can simultane
200 constants of transitions that lead to strong deoxynucleoside triphosphate binding prior to chemistry.
201 e effect of mutations in the YXDD motif, the deoxynucleoside triphosphate binding site, the thumb dom
202 ismatched nucleotides from the ternary E.DNA.deoxynucleoside triphosphate complex and by the use of s
203 ccur in a fully assembled DNA polymerase-DNA-deoxynucleoside triphosphate complex with two canonical
204 relatively inactive except when the cellular deoxynucleoside triphosphate concentrations are high, as
205 Thus, rather large increases in fidelity of deoxynucleoside triphosphate insertion and mispair exten
207 r results suggest that motif B influences RT-deoxynucleoside triphosphate interactions at multiple st
209 d by the direct interaction of CD81 with the deoxynucleoside triphosphate phosphohydrolase SAMHD1.
211 ponse to genotoxic stress by maintaining the deoxynucleoside triphosphate pools necessary for error-p
215 ion by the lentivirus vector was improved by deoxynucleoside triphosphate pretreatment of the vector
216 oredoxin, a primer-template, and an incoming deoxynucleoside triphosphate reveals a putative hydrogen
217 ring the balance between DNA replication and deoxynucleoside triphosphate synthesis in the case of nd
218 than the Exo mutants, converted the incoming deoxynucleoside triphosphate to its monophosphate, indic
219 1 has been identified as the first mammalian deoxynucleoside triphosphate triphosphohydrolase (dNTPas
224 e on the side of O-helix facing the incoming deoxynucleoside triphosphate, as determined by x-ray ana
226 , potentially involving rearrangement of the deoxynucleoside triphosphate-binding pocket residues.
227 titutions near the polymerase active site or deoxynucleoside triphosphate-binding site of HIV-1 RT in
229 P, XTP, dXTP, or 6-hydroxylaminopurine (HAP) deoxynucleoside triphosphate] into nucleic acids is prev
230 catalyzes the hydrolysis of nucleoside- and deoxynucleoside-triphosphate (NTP) substrates by nucleop
231 d expression, decreasing the availability of deoxynucleoside triphosphates (dNTP) and thus HIV-1 reve
232 large number of nucleoside analogues and 2'-deoxynucleoside triphosphates (dNTP) have been synthesiz
234 cellular enzyme that depletes intracellular deoxynucleoside triphosphates (dNTPs) and inhibits the a
235 4), NL4-3 virions, incubated with or without deoxynucleoside triphosphates (dNTPs) and/or the polyami
239 t cell type contains a very low level of the deoxynucleoside triphosphates (dNTPs) required for provi
240 (SAMHD1) is a triphosphohydrolase converting deoxynucleoside triphosphates (dNTPs) to deoxynucleoside
242 icted infection by hydrolyzing intracellular deoxynucleoside triphosphates (dNTPs), lowering their co
243 , is impaired due to limited availability of deoxynucleoside triphosphates (dNTPs), which are needed
246 of a 13/20mer primer/template (D) to detect deoxynucleoside triphosphates (N)-dependent conformation
247 bility of the enzyme to discriminate between deoxynucleoside triphosphates and nucleoside analog RT i
248 erize efficiently with low concentrations of deoxynucleoside triphosphates and seems to be able to ex
249 d d4TMP, even when relatively high levels of deoxynucleoside triphosphates are present in the reactio
250 work by depleting the pool of intracellular deoxynucleoside triphosphates but has also been reported
251 , suggesting that demethylation of alkylated deoxynucleoside triphosphates by AlkB could have biologi
254 he capacity to synthesize dTTP and the other deoxynucleoside triphosphates essential for viral replic
256 NA polymerases catalyze the incorporation of deoxynucleoside triphosphates into a growing DNA chain u
257 racellular enzyme that specifically degrades deoxynucleoside triphosphates into component nucleoside
258 e (RNAP) for ribonucleoside triphosphates vs deoxynucleoside triphosphates inverted question mark(kca
259 magnesium, potassium, sodium, Tris ions, and deoxynucleoside triphosphates on melting profiles of dup
260 2 microM, had no detectable activity against deoxynucleoside triphosphates or other typical Nudix hyd
261 y with different primers and compositions of deoxynucleoside triphosphates to differentially monitor
262 stimulated triphosphohydrolase that converts deoxynucleoside triphosphates to the constituent deoxynu
263 re, the addition of DNA polymerase alpha and deoxynucleoside triphosphates to the excision reaction f
264 converting ribonucleoside triphosphates and deoxynucleoside triphosphates to their respective diphos
265 drolyze all eight of the canonical ribo- and deoxynucleoside triphosphates to their respective monoph
268 g sequences, under conditions where primers, deoxynucleoside triphosphates, and enzyme are not limiti
269 th various triggers, including S100 cytosol, deoxynucleoside triphosphates, detergents, NaCl, and buf
270 in the presence of a normal concentration of deoxynucleoside triphosphates, leading to a high toxicit
271 hydrolase that depletes the cellular pool of deoxynucleoside triphosphates, thereby preventing revers
278 eration of a wide variety of nucleoside (and deoxynucleoside) triphosphates (NTPs) from their cognate
279 een proposed that SAMHD1 is a dGTP-dependent deoxynucleoside triphosphohydrolase (dNTPase) that restr
281 HD domain-containing protein 1 (SAMHD1) is a deoxynucleoside triphosphohydrolase that restricts the r
282 inoquinoline- and 2-aminoquinazoline-based C-deoxynucleosides (TRIPsides) that are designed to be inc
283 en condensed with appropriately protected 2'-deoxynucleosides using 4,5-dicyanoimidazole to yield the
284 Ts catalyze N-glycosidic bond cleavage of 2'-deoxynucleosides via a covalent 2-deoxyribosyl-enzyme in
286 group of solid phase-supported 2'-fluoro-2'-deoxynucleoside was used as an acceptor and 5'-diisoprop
287 ion of lipophilic alkyl furano pyrimidine 2'-deoxynucleosides, we now report that 2',3'-dideoxy sugar
290 the expanded adenine, we tested a formamide deoxynucleoside, which Leonard proposed as a shortened t
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