ライフサイエンスコーパス: differential expression

1 sposons and repetitive elements led to their differential expression.

2 e assessment of biological heterogeneity and differential expression.

3 , identifying many immune-related genes with differential expression.

4 ds for robust data-aware analysis of RNA-seq differential expression.

5 were located within the mapped QTLs, showed differential expression.

6 packages for expression level estimation and differential expression.

7 ariance weighted t-test was used to identify differential expression.

8 resent down-regulation, up-regulation and no differential expression.

9 tuses, and 47 proteins displayed significant differential expressions.

10 SNPs from the 82 SLE loci were implicated in differential expression (9.81 x 10-198 < P < 5 x 10-3) o

11 ated in allowing users to perform proteomics differential expression/abundance analysis in a user-fri

12 ervation among other schistosome species and differential expression across five different life-cycle

13 However, assessing differential expression across multiple individuals has

14 morigenesis, some of which are known to show differential expression across smoking levels.

15 ta-analysis determined a single magnitude of differential expression across studies and identified co

16 at identifying targets of therapies than the differential expression alone.

17 Moreover, in differential expression analyses of simulated and real d

18 d linear model framework in order to perform differential expression analyses.

19 Differential expression analysis (DEA) is one of the mai

20 ustering, gene ontology enrichment analysis, differential expression analysis and comparison of exper

21 Main Outcomes and Measures: We performed differential expression analysis and gene coexpression a

22 Differential expression analysis and Gene ontology enric

23 or the time being, there does not exists any differential expression analysis approach for RNA-seq da

24 Differential expression analysis demonstrated an increas

25 d (v) (13)C-MFA together with RNA-sequencing differential expression analysis establishes the vanilli

26 Differential expression analysis following nuclear RNA-s

27 Differential expression analysis has long been used for

28 rns were identified in the C. hongkongensis, Differential expression analysis identified the miRNAs t

29 is restricted to glandular sepal tips; thus, differential expression analysis of contrasting floral t

30 Our approach to differential expression analysis of minor intron-contain

31 Differential expression analysis of RNA sequencing (RNA-

32 rk module-based generalized linear model for differential expression analysis of the count-based sequ

33 Differential expression analysis of the RNA sequencing d

34 Differential expression analysis of transcriptomes from

35 can therefore improve the interpretation of differential expression analysis of transcriptomic data

36 In this study we propose a new differential expression analysis pipeline, dubbed as sup

37 ional RNA-Seq data sets and with alternative differential expression analysis pipelines.

38 Differential expression analysis revealed 128 proteins t

39 Differential expression analysis revealed hundreds of ge

40 Differential expression analysis showed that G. muris in

41 lux analysis ((13)C-MFA), and RNA-sequencing differential expression analysis to uncover the followin

42 Differential expression analysis uncovered new immune-ce

43 through bootstrapping, while IsoDE2 performs differential expression analysis using the bootstrap sam

44 ts superiority to three existing methods for differential expression analysis using three data exampl

45 sncRNA identification and differential expression analysis was performed with iMir

46 ommonly used statistical methods for RNA-seq differential expression analysis were designed for indiv

47 A differential expression analysis with Cufflinks and Stri

48 alculation are challenging in the context of differential expression analysis with RNA-seq data.

49 Results Differential expression analysis yielded a 14-gene radio

50 RNA-Seq, variation, model reconstruction and differential expression analysis, all delivered through

51 ny larger scale studies focusing on not only differential expression analysis, but also quantitative

52 and improved robustness to batch effects in differential expression analysis, compared to existing m

53 ta, including integrated features to support differential expression analysis, interactive heatmap pr

54 s multiple layers of genomic analysis (e.g., differential expression analysis, principal component an

55 ractive and customizable functions including differential expression analysis, profiling plotting, co

56 For differential expression analysis, voom with quality weig

57 ovel machine learning methodology for robust differential expression analysis, which can be a new ave

58 estimates and the sensitivity of subsequent differential expression analysis.

59 ignificantly advance research on large-scale differential expression analysis.

60 certainty and propagate this into downstream differential expression analysis.

61 ing the confounding effect of RNA quality in differential expression analysis.

62 n terms of power and FDR control for RNA-seq differential expression analysis.

63 oming an important complement to traditional differential expression analysis.

64 te power for the popularly applied tests for differential expression analysis.

65 , and multiple runs of balanced sampling for differential expression analysis.

66 data using this library, yielding sensitive differential expression analysis.

67 ompared to XBSeq, allowing users to evaluate differential expression and APA events in parallel.

68 ustering of cell types across samples, while differential expression and coexpression network analyse

69 ults with human postmortem AD gene networks, differential expression and differential splicing signat

70 The differential expression and function of CD83 on human im

71 s) in 70 former smokers with COPD to compare differential expression and gene coexpression in bronchi

72 Here, combining differential expression and gene coexpression network an

73 Differential expression and methylation were analyzed th

74 a constant-expression model for switch-like differential expression and optionally models the zero-i

75 i) the visualization of expression profiles, differential expression and regulatory networks.

76 tial downstream target of SENP1 and that the differential expression and response of GATA1 and Bcl-xL

77 a sets directly from GEO in order to perform differential expression and survival analysis for a gene

78 By incorporating both the significance of differential expression and the consistency across platf

79 rning approach that captured features beyond differential expression and was better at identifying ta

80 ar regression to estimate cell type-specific differential expression, and a global cutoff to judge si

81 does not require a P-value cut-off to define differential expression, and works well even with small

82 nd to ignore this correlation by testing for differential expression assuming some sort of independen

83 re sensitive in detecting cell type-specific differential expression at alpha < 0.05 missed by the gl

84 entifies outliers efficiently, and evaluates differential expressions at biologically interesting lev

85 s, using it to identify 842 variants showing differential expression between alleles, including 53 we

86 Besides INS and GCG, 26 genes showed differential expression between alpha- and beta-cells.

87 Ninety microRNAs showed differential expression between families with divergent

88 Significant differential expression between HL and normal GC-B cells

89 ghting individual effect sizes (derived from differential expression between relevant SCN and WB samp

90 The known miRNAs showed differential expression between the mangroves and glycop

91 pathways were identified that also exhibited differential expression between the tolerant and intoler

92 We show that accurate estimates of differential expression can be obtained from molecule co

93 We also find that crosstalk and differential expression can influence drug activity: no

94 mbination of unbiased bioinformatic methods (differential expression, correlation, co-expression, mic

95 By combining differential expression data for L. mexicana, L. major a

96 The CKDdb database contains differential expression data from 49395 molecule entries

97 las to enable the projection of baseline and differential expression data from curated expression stu

98 sing both chromatin conformation capture and differential expression data, we show that CisMapper is

99 dhesion that were also seen in transcriptome differential expression (DE) analysis, Fc gamma receptor

100 SnoRNASeq identified differential expression (DE) of 6 snoRNAs in young versu

101 RNA-seq has been mainly used for testing differential expression (DE) of transcripts between two

102 has been increasingly used for mRNA or miRNA differential expression (DE) studies due to its advantag

103 s linear regression-based cell type-specific differential expression (deconvolution) detection on a g

104 f linear regression-based cell type-specific differential expression detection differed for each gene

105 d error on sensitivity of cell type-specific differential expression detection using linear regressio

106 egression (sensitivity of cell type-specific differential expression detection) on a per-gene basis.

107 imates and, subsequently, the sensitivity of differential expression detection.

108 155 annotated transporter proteins exhibited differential expression during the development of macros

109 Differential expression, enrichment, and protein-protein

110 nction of 'meta-profiling' was added to view differential expression events according to user-defined

111 rmine the biological processes affected by a differential expression experiment.

112 here they can be used to interrogate co- and differential expression for any other genes, groups of g

113 can view baseline expression in tissues, and differential expression for biologically meaningful pair

114 d noncoding regions of the genome, including differential expression from loci that produce regulator

115 d protein, was the only candidate exhibiting differential expression in both screens.

116 the healthy gastrointestinal tract, displays differential expression in cancerous tissues and is cons

117 ss all three -omics levels, confirming their differential expression in human disease.

118 ested in detecting and interpreting relevant differential expression in mixture samples.

119 nineteen small nucleolar RNAs also revealed differential expression in OIR retinas compared with con

120 ciated genes GRIK3, GRIN2C, and GABRA1) with differential expression in postmortem PFC of male AUD su

121 sized that the MYC proto-oncogene would show differential expression in pRCC subtypes.

122 Hundreds of genes exhibited differential expression in response to co-treatment of d

123 n our baySeq algorithm for identification of differential expression in RNA-seq data based on a negat

124 ), metabolic pathways and 258 of them showed differential expression in silico under salinity.

125 Differential expression in symbiosis of a repertoire of

126 We report greater sex-biased differential expression in the pituitary as compared to

127 They interacted with histones and their differential expression in transformed cells of the nerv

128 hypomethylation, and we validated their mRNA differential expressions in 19 ccRCCs and 10 GEO dataset

129 We propose to capture differential expression information more comprehensively

130 y limited capacity to summarize the observed differential expression information.

131 power of several popularly applied tests for differential expression is achieved and is close to the

132 les, we identify BIRC3 is the only IAP whose differential expression is associated with long-term sur

133 ngly, APA in mature pollen is distinct where differential expression levels of a set of poly(A) facto

134 Furthermore, the differential expression levels of Egfr showed significan

135 eutic consequences, we also demonstrate that differential expression levels of FGFR2, Plcgamma1 and G

136 lele- or lineage-specific manner, unlike the differential expression levels of HLA-A or HLA-C reporte

137 and inflammation are among those presenting differential expression levels.

138 varying stress tolerance profiles, and built differential expression library of their transcripts und

139 We identify genes whose differential expression may underlie organ-specific elon

140 Convergence of differential expression, network analyses, and module cl

141 Bacterium Ruegeria pomeroyi DSS-3 triggered differential expression of >80 genes in diatom Thalassio

142 N, FSGS, IgAN, and MPGN proximal tubules had differential expression of 13, 14, eight, and eight micr

143 gnificantly altered methylation profiles and differential expression of 157 miRNAs and 1009 genes aff

144 DN, FSGS, IgAN, and MPGN glomeruli exhibited differential expression of 18, 12, two, and 17 known mic

145 Differential expression of 348 vitamin D-associated gene

146 as two distinct cell populations defined by differential expression of 412 genes and of multiple pat

147 Short-term EC was associated with differential expression of 46 human and 7 viral miRNAs,

148 : RNA sequencing was performed to assess the differential expression of 561 immune genes and 20 immun

149 analysis of colorectal cancer tissues showed differential expression of 83 miRNAs relative to NCE.

150 We identified differential expression of 971 lncRNAs between PP and NN

151 been characterized only on the basis of the differential expression of a few transcription factors a

152 -driven studies where the aim is to quantify differential expression of a limited number of genes.

153 In this study, we show how differential expression of a network of extracellular ma

154 Differential expression of a subset of genes overlapped

155 jor differences in these metrics, except for differential expression of a Y-chromosome associated mRN

156 Using two HNSCC datasets with differential expression of ANO1, we showed hypermethylat

157 e proteomic analysis revealed no significant differential expression of any protein-encoding gene in

158 Notably, SIP signaling causes differential expression of approximately 14% of GAS core

159 transcriptome reprogramming as reflected by differential expression of approximately 20% of all gene

160 sion, loss of Ret in null homozygotes led to differential expression of approximately 300 genes, wher

161 We find no evidence for systematic sex-differential expression of ASD risk genes.

162 erance in kidney transplantation showing the differential expression of B cell-related genes and the

163 From differential expression of bacterial transporter systems

164 s; instead, their biosynthesis relies on the differential expression of carbohydrate enzymes, resulti

165 In this latter group, we validated the differential expression of CCL20/macrophage-inducible pr

166 med precursors can be distinguished based on differential expression of CD172a.

167 We observed differential expression of CD95(Fas) in CD27(+) B-cells

168 Differential expression of cell surface receptors may re

169 (GA) regulation of LER were associated with differential expression of cell-expansion genes.

170 On the basis of the differential expression of cell-surface markers, here we

171 istinct inflammatory profile hallmarked by a differential expression of circulating eicosanoids and c

172 he Scano-miR profiling platform based on the differential expression of circulating microRNAs (miRNA,

173 We demonstrated that differential expression of circulating miRNAs occurs in

174 to differential Ag presentation rather than differential expression of costimulatory or inhibitory m

175 F, and rs2076295 genotype is associated with differential expression of DSP in the lung.

176 to identify SNPs that may be associated with differential expression of DXME genes.

177 These data suggest that differential expression of DXME may associate with healt

178 Differential expression of energy metabolism genes, whic

179 ly, characterization of enhancers exhibiting differential expression of enhancer RNAs pointed a centr

180 Further analysis showed differential expression of Epr3 in the epidermis and cor

181 timulation of leaf elongation, of which, the differential expression of EXPA4 and EXPA7 was related t

182 Pathway and gene ontology analysis revealed differential expression of functionally important genes;

183 ivisions, characterized by largely conserved differential expression of gene markers.

184 anying R package for identifying switch-like differential expression of genes along pseudotemporal tr

185 tle attention has been paid to modelling the differential expression of genes along such trajectories

186 Furthermore, differential expression of genes associated with DNA met

187 s from Brd1(+/-) and wild-type mice revealed differential expression of genes enriched for schizophre

188 ession of immune genes in adipose tissue and differential expression of genes for lipid metabolism, s

189 y gained or lost genes in cancer, not due to differential expression of genes known to perform the fu

190 In particular, we observed the differential expression of genes related to mechanical s

191 ies in insulin-resistant fat bodies revealed differential expression of genes, including those involv

192 rived ammonia in lung cancer cell lines with differential expression of glutaminase.

193 fferences among genotypes, but an unexpected differential expression of histones were also identified

194 ich encode the alpha1/alpha2 domains, drives differential expression of HLA-C allomorphs at the cell

195 audal patterning of the neural tube leads to differential expression of Hox genes that contribute to

196 Differential expression of human gamma-tubulin isotypes

197 atory human TH17 cell functions based on the differential expression of IL-10, which is regulated by

198 Studies of lonely individuals reported differential expression of inflammatory genes in periphe

199 We propose that the differential expression of inhibitory FcgammaRIIB on mye

200 Differential expression of interferon response, stress r

201 Detection of gene fusions and differential expression of known disease-causing transcr

202 hese morphological differences are linked to differential expression of Lamin isoforms, with primary

203 represent the first discovery of widespread differential expression of lncRNAs in response to virus

204 fy unique monocyte/macrophage populations by differential expression of Ly6C in CD11b(+) cells and to

205 by infection, cells were sorted based on the differential expression of Ly6G and Ly6C.

206 ty control standards and accurately captured differential expression of marker genes for type II (e.g

207 ir phenotypic switching, as indicated by the differential expression of marker proteins.

208 Our results revealed differential expression of miR-146a-5p, miR-146b-5p, miR

209 Differential expression of miRNA-218-5p (miR-218-5p) was

210 dietary zinc restriction was associated with differential expression of miRNAs in the amygdala.

211 The differential expression of MMP-9 and its regulatory fact

212 ence on the human transcriptome, causing the differential expression of more than 3000 protein-coding

213 Overall, the differential expression of multiple circRNAs in HCC tiss

214 hanolamine (NAE 12:0) was accompanied by the differential expression of multiple genes encoding small

215 l and regulatory properties and suggest that differential expression of Musashi isoforms may influenc

216 es in MEP, MkP, and ErP populations revealed differential expression of MYB We tested whether alterat

217 olic changes were mediated, in part, through differential expression of Myc, a transcription factor t

218 n this issue, Katsunuma et al. show that the differential expression of nectins and cadherins establi

219 Gene expression analyses suggested that differential expression of nuclear receptors involved in

220 Expression analysis suggests differential expression of number of genes between leaf

221 unction under variable light environments by differential expression of opsin subsets with retinal lo

222 ns between the rice varieties that regulates differential expression of OsBZ8 gene during salt stress

223 Differential expression of particular ectonucleotidases

224 pain was also investigated by comparing the differential expression of pPDGFRalpha/beta and phosphor

225 We identified the differential expression of proteins between insulinoma a

226 ns in protein binding sites correlating with differential expression of proximal genes and experiment

227 th Jurkat and HL60 cell lines based on their differential expression of PSGL-1 ligand by using a ridg

228 s and careful phenotype definition, we found differential expression of putative interactors of these

229 vironment and SIV infection and suggest that differential expression of restriction factors may play

230 These results indicate differential expression of rRNA at high SRTs, which may

231 The differential expression of select proteins was validated

232 Taken together, our findings establish that differential expression of several MAPK factors underlie

233 c analysis of P. acnes phylotypes revealed a differential expression of several proteins, including a

234 Prospective validation confirmed the differential expression of specific cytokines from PVR-A

235 ding our earlier observations of substantial differential expression of specific miRNAs between clini

236 o as beta1-4, and which are distinguished by differential expression of ST8SIA1 and CD9.

237 as a transcriptional regulator and revealed differential expression of STAT3 signaling-related genes

238 s and methylation levels likely leads to the differential expression of target genes.

239 -induced mitotic death arises primarily from differential expression of the anti-apoptotic proteins B

240 y expressed at the RNA level had concomitant differential expression of the encoded proteins.

241 Root transcriptome analysis demonstrated the differential expression of the members of WRKY, MYB and

242 In this study, we demonstrate that differential expression of the membrane scaffold CD82 mo

243 tains three promoters, suggesting a need for differential expression of the mitochondrial genome.

244 Differential expression of the NCR regulon and additiona

245 pithelial neoplasia (PanINs), likely through differential expression of the p53 regulator p19ARF.

246 nt neural progenitor types, defined by their differential expression of the transcription factors Pax

247 in both oxic and anoxic environments through differential expression of their respiromes in response

248 pliced exon regions, which is accompanied by differential expression of these alternatively splice ex

249 The differential expression of these genes depends on the gr

250 Differential expression of these I. ricinus lipocalins d

251 Differential expression of these miRNAs was confirmed by

252 Gene set enrichment analysis indicated differential expression of these regulons in gingival he

253 ulatory networks were generated by comparing differential expression of TP53 and CC-regulated genes w

254 lic and catabolic phenotypes, and identified differential expression of transcriptional pathways know

255 cells with 5-azacytidine, which resulted in differential expression of TrkC-miR2 and TrkC host gene.

256 is monogenic situation is compensated by the differential expression of two alternative splice varian

257 ng a forward genetic approach, we identified differential expression of type I IFN as a positional ca

258 The time-dependent, melatonin-induced differential expression of VEGF-A isoforms culminates in

259 Vertebrate color vision relies on the differential expression of visual pigment proteins (opsi

260 ar tooth morphogenesis are mainly due to the differential expression of Wnt antagonists, particularly

261 ells had a preadipocyte signature and showed differential expression of Wnt/beta-catenin-associated g

262 Anoplophora glabripennis larvae exhibited differential expression of ~3600 genes in response to di

263 Neocortex showed significantly greater differential expression over time than subcortical struc

264 IL-1beta signaling determines the differential expression pattern of IL-10, which is neces

265 Here we show a developmental stage-specific differential expression pattern of Nfatc1 driven by the

266 ysis was carried out to identify and analyze differential expression pattern of tomato membrane bound

267 ysis was carried out to identify and analyze differential expression pattern of tomato membrane bound

268 Observation of a differential expression pattern, including strong expres

269 We conclude that the interplay of differential expression patterns and SDR epimerisation r

270 gene program, we identified 51 lincRNAs with differential expression patterns between embryonic and a

271 +) Treg cell phenotype and highlighting some differential expression patterns for several markers, in

272 Differential expression patterns of cytochrome P450 comp

273 e demonstrate that this framework can detect differential expression patterns under a wide range of s

274 mong the changed genes, three clades showing differential expression patterns were constructed to ide

275 o inferior results when dealing with complex differential expression patterns.

276 We thus postulate that differential expression profile of serum HCMV miRNAs in

277 e thyroid hormone receptor (TRalpha 3) has a differential expression profile.

278 Through systematic exploration of differential expression profiles after single compound t

279 tRNA-derived ncRNAs show differential expression profiles and play roles in many

280 RNA from human tissues and found to display differential expression profiles consistent with literat

281 in quality control measures to obtain 'good' differential expression results.

282 crease tissue specificity and sensitivity of differential expression results.

283 ify contiguous regions of the genome showing differential expression signal at single base resolution

284 ally expressed genes is small or the overall differential expression signal is weak.

285 s depleted in diapaused blastocysts, and the differential expression signatures of dKO ESCs and diapa

286 While integration of differential expression statistics has been used to refi

287 SC2 were selected for further study based on differential expression studies.

288 sed single-cell transcriptional variance and differential expression, suggesting functional impact on

289 he mixture model is based on the transformed differential expression test P-values (z-scores), it is

290 nriched and associated with higher degree of differential expression than differential m6A methylated

291 enes showing significant case-versus-control differential expression, their fold changes were </= 1.3

292 Traditional differential expression tools are limited to detecting c

293 ry challenging to estimate power for RNA-Seq differential expression under complex experimental desig

294 We previously identified a gene whose differential expression underlies the natural variation

295 Differential expression was also highly significant (P <

296 ecular pathways and interrelated genes whose differential expression was associated with asthma contr

297 tients was found by quantitative PCR, but no differential expression was found for other subunits.

298 s who did not develop MODS (NoMODS), maximal differential expression was seen within the hyperacute w

299 arkers were identified showing significantly differential expression when comparing lung cancer versu

300 we show that the GAMLSS approach can analyze differential expression with greater accuracy, higher se