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1 s follow a squared cosine trend with varying dihedral angle.
2 stereochemistry, and flexibility in the psi dihedral angle.
3 al cation followed by a decrease in the flap dihedral angle.
4 ith a single repetitive (+)-gauche interunit dihedral angle.
5 ance spectroscopy to measure the H-C14-C15-H dihedral angle.
6 ations of the pKa as a function of the C6-C7 dihedral angle.
7 vealed no preferred C-X...C horizontal lineO dihedral angle.
8 h distinct conformations around the CC-SS-CC dihedral angles.
9 hexamer shape, as defined by subunit-subunit dihedral angles.
10 l J(H-H) coupling constants as a function of dihedral angles.
11 accompanied by strong flattening of the ring dihedral angles.
12 selectivity than related ligands with larger dihedral angles.
13 stance restraints, 12 hydrogen bonds, and 44 dihedral angles.
14 , on average, are observed at all remaining dihedral angles.
15 obtained by rigid rotation of all side-chain dihedral angles.
16 conformation, in agreement with the obtained dihedral angles.
17 the phenyl results in increased phenyl-vinyl dihedral angles.
18 ed with longer DNA binding sites and smaller dihedral angles.
19 overned by the Fe-O-C angle and the Fe-O-C-C dihedral angles.
20 f the 1.1-A X-ray structure as input for the dihedral angles.
21 ylene rings, as determined by their relative dihedral angles.
22 motifs and the long-range correlation of the dihedral angles.
24 he thiophene rings are nearly perpendicular (dihedral angle 75 degrees ), indicating considerable ste
25 correlates (3)J(PH) with phosphorus-hydrogen dihedral angle, a recently reported glycine-derived 1,3,
26 o isomers of cyclo-l-cystine differ in their dihedral angle about the disulfide bond; the M isomer (w
27 n at one end and a hexagon at the other, the dihedral angle about the edge increases, producing a dih
29 a pentagon to a hexagon has a DAD, since the dihedral angles about the edge broaden from its pentagon
32 ameter metric based on the comparison of the dihedral angles along all edges of the coordination poly
33 In the simulations, the sampling of all five dihedral angles along the linker was enhanced, so that b
37 rees) in the characteristic hydrocarbon-base dihedral angles (alpha' and beta') as well as the glycos
38 diyne-bridged oligomers, where the preferred dihedral angles amount to roughly 30 degrees and 0 degre
39 nformational reorganization of the distorted dihedral angle and distance between amide units at chemi
41 troscopy NMR studies suggest that the biaryl dihedral angle and the electronic nature of ortho-substi
42 he correlation (P < 0.001) between the dione dihedral angle and the preferential inhibition of either
43 ents, including 41 restraints on 19 backbone dihedral angles and 35 (13)C-(15)N distances between 3 a
44 these two regions allows for variability in dihedral angles and concomitant differences in chain con
45 ar the target base in position to rotate the dihedral angles and flip the base out of the DNA duplex.
49 erved to be dependent on the O-Mo-S-C(alpha) dihedral angles and ligand types, being relatively large
51 erize the various properties of the backbone dihedral angles and secondary structural motifs of the g
53 t-mean-square fluctuations, and variation in dihedral angles), and variability in designed structures
59 ecay rates of the angle between the dipoles, dihedral angles, and distance autocorrelations obtained
60 a)-C(alpha) virtual bond lengths, angles and dihedral angles, and the X-ray structure is best-fitted
61 g dynamics, water permeability (p(f)), and a dihedral angle are defined as functional order parameter
64 nformer families differing in characteristic dihedral angles are identified within a range of 16 kcal
67 ggling algorithm against a code in which the dihedral angles are varied independently (thrashing).
68 f high-quality correlation plots between the dihedral angles around a residue and those between seque
69 tructure with the same energy, for which the dihedral angles around the flexible ring have opposite s
70 ts deviate significantly from planarity with dihedral angles around the imide group reaching ca. -150
72 ations can arise either because of incorrect dihedral angle assignments or secondary structural prope
73 rted here as changes in O-atom locations and dihedral angles, become stronger for larger, more substi
74 unique Archimedean solid with all edges and dihedral angles being equal, the icosidodecahedron, and
75 ransition state also suggests that a minimum dihedral angle between C-H bonds and Pd-OAc bonds is cru
77 ndence of the charge-transfer rates upon the dihedral angle between donor and acceptor stilbenes.
78 in a global bend angle of about 38(o) and a dihedral angle between platinated guanine bases of appro
83 ose to perpendicular orientation (the actual dihedral angle between the planes of the imidazole ligan
84 in close to parallel orientation (the actual dihedral angle between the planes of the imidazole ligan
85 These structural studies indicate that the dihedral angle between the two planes formed by the two
86 he distance between the chromophores and the dihedral angle between their transition dipoles [Deltaep
89 oops 3 and 5 have ribbon-like structure with dihedral angles between neighboring rings near zero.
91 of electronic coupling is controlled by the dihedral angles between the terephthalate C6 ring and th
92 position and then were used to determine the dihedral angles between the two peptide groups by means
93 the unusual match between residue-level PP2 dihedral angle bias in the unfolded state and PP2 helica
94 drogen atoms on the ring with identical PNCH dihedral angles but measured coupling constants of appro
95 calized perturbation in hydrogen bonding and dihedral angles, but the hydrophobic residue of a G4G in
96 solution potential is built as a function of dihedral angles by a smoothing procedure and continuous
97 (MC) motions [represented by coarse-grained dihedral angles (CGDAs) gamma(n) based on four successiv
98 der physiological conditions, their backbone dihedral angles change synchronously in groups of four o
100 n energies identify a region for C4-C5-C6-N2 dihedral angle changes where deshielding of C4 is correl
103 ophene rings in 3 and 4 are nearly coplanar (dihedral angle close to 0 degrees ) and they adopt the a
104 itative understanding of why some side-chain dihedral angle combinations are highly populated and oth
105 cids in peptides and proteins adopt specific dihedral angle combinations; however, we still do not ha
106 ilane CH(2)Si(4)Me(8) (1), with the smallest dihedral angle, comparison of MCD with absorption spectr
109 distal end chain order with primarily trans dihedral angle conformations; the extension of these ord
110 a knowledge-based potential for a residue's dihedral angles, considering the identity and conformati
111 library, the backbone preferentially adopts dihedral angles consistent with the polyproline II confo
113 ogen bonding, residual dipolar coupling, and dihedral angle constraints were used to calculate a set
114 total of 2220 NOE distance constraints, 258 dihedral angle constraints, and 168 backbone hydrogen bo
118 proximately 70% of both the distance and the dihedral-angle constraints, and possesses the characteri
119 5, in addition to changes of the C4-C5-C6-N2 dihedral angle could be consistent with visible absorpti
121 nstrate that the mean-square displacement of dihedral angles, defined by 4 successive C(alpha) atoms,
124 lems within the molecules as well as updated dihedral-angle diagnostics, and it can calculate and dis
125 ometric constraint-exclusion of head-to-tail dihedral angle discrepancies (DADs)-explains this limite
128 and n variables, where the equations set the dihedral angle discrepancy about different types of edge
130 ose of this study was to analyze and compare dihedral angle distribution functions of the side chains
133 The 2D spectra are well simulated using dihedral angle distributions around the average values (
134 ntrast, we show that the observed side-chain dihedral angle distributions for both Val and Thr can be
136 observe striking differences in the backbone dihedral angle distributions for the protein unfolded un
137 ates how the force dependence of the protein dihedral angle distributions give rise to the worm-like
138 l transmission in peptides and proteins from dihedral angle dynamics observed in extended molecular d
139 in contains three bonds, two angles, and one dihedral angle; effective harmonic bonds are used to des
140 B(I) and B(II) associated with the backbone dihedral angles epsilon and zeta but also coupled change
141 ally stable, and we find good agreement with dihedral angles estimated from solid-state NMR experimen
142 vered that the glycine hinge adopts backbone dihedral angles favored in D-amino acids and that incorp
143 ackbone is highly extended, with phi and psi dihedral angles favoring the beta or P(II) regions.
145 proteins arising due to intrinsic varphi-psi dihedral angle fluctuations dictate the course of protei
148 This was unexpected because the range of dihedral angles for arginine is limited relative to glyc
150 approach also produces geometric parameters (dihedral angles for the beta-methylene hydrogens) that s
151 mophore, including rotation of the (C11-C12) dihedral angle from -11 degrees in the 11-cis isomer to
154 nds containing biaryl backbones with smaller dihedral angles generate catalysts that react with highe
156 UVRR nuW3 mode with the tryptophan chi(2,1) dihedral angle has been extended to a full, 360 degrees
157 landscape as a function of the corresponding dihedral angles has been determined for each glycosidic
158 ite with restricted rotation of the backbone dihedral angles; however, it does not have a well-define
159 ate, as measured by deviations of side-chain dihedral angles; however, often due to multiple atomic c
160 has mostly been on constraining the backbone dihedral angles; however, the correct orientation of the
161 energy profile generated by varying the psi dihedral angle in Ace-Pro-NMe indicates that the conform
162 sed conformational energy of the C4-C5-C6-N2 dihedral angle in the intact protein in the Pr state.
163 tions show that variation of the histidines' dihedral angles in coordinating Cu controls the coupling
166 onic effects that preorganize the main-chain dihedral angles in the conformation found in the triple
168 lymers as a result of covalently constrained dihedral angles in the substituents (not the backbone),
169 ith suitable bridge lengths, a change in the dihedral angle induced a switch of the binaphthyl units
172 complex are not coplanar, and the resulting dihedral angle is consistent with negative supercoiling.
175 membered lactone the smallest Pd/endo-beta-H dihedral angle is observed for a conformer with a compar
176 ger range of conformations; however, the Phi dihedral angle is restricted to values smaller than 30 d
177 yramidal coordination, where the Cl-Si-Si-Cl dihedral angle is twisted by 43.3 degrees (calcd 45.9 de
179 a Schellman motif to cap an alpha-helix; its dihedral angles lie in the right side of the Ramachandra
180 ment, measured by phi, psi, chi1, and pseudo-dihedral angles more accurately classify kinase crystal
182 rapid algorithm using only single (phi,psi) dihedral angle moves also generates tertiary structures
186 e rotation around the F-C-S horizontal lineO dihedral angle of (fluoromethyl)methyl sulfoxide was eva
187 about the disulfide bond; the M isomer (with dihedral angle of -90.1 degrees) is found to be slightly
188 onformation for ribose and a H1'-C1'-C2'-H2' dihedral angle of 53 degrees at the transition state.
189 he two bases are found not to be coplanar; a dihedral angle of 6.1 degrees between the base planes is
191 , BIT-(NHexyl)2 is a twisted molecule with a dihedral angle of 78 degrees between the charged planes.
194 he pyridinium and benzene rings in 11 form a dihedral angle of only 3.9 degrees (cf. pyridine-benzene
195 l energy function governing the C(11)==C(12) dihedral angle of retinal, completes within 150 fs and y
198 These "ABA" states correspond to consecutive dihedral angles of -55 degrees /+130 degrees /-55 degree
199 le of only 3.9 degrees (cf. pyridine-benzene dihedral angles of 35.4 degrees and 31.4 degrees in 9, a
201 e, previous studies have suggested that some dihedral angles of amino acids in specific regions of th
202 rapharmacophore point distances, angles, and dihedral angles of different analogues spread over wide
203 and trans,trans-ONOONO, based on the O-N-O-O dihedral angles of either approximately 0 degrees or app
204 peptide mimetics to enumerate the side-chain dihedral angles of leucine (Leu) and isoleucine (Ile), a
206 llowing three issues concerning the backbone dihedral angles of protein structures are presented.
208 lly do not coincide with canonical values of dihedral angles of residues in parallel or antiparallel
210 edented structural variation of the phi, psi dihedral angles of the alpha-helix is suggested as a pos
212 core was shown to be highly planar where the dihedral angles of the component pyrrole, furan and inde
213 erms of: 1), a local correlation between the dihedral angles of the guest amino acid and the proline
216 p between Raman frequencies and Ramachandran dihedral angles of the polypeptide backbone indicates th
219 used a basis set that includes all internal dihedral angles of the system with the exception of the
222 e all down (Cgamma-endo), and the varphi/psi dihedral angles of the Xaa 3(S)Hyp residues are also sim
225 angle theta (Y = O, N, C) and lone pair-PYC dihedral angle omega shows similar theta,omega surfaces
227 l as the rotation of one or a few side-chain dihedral angles or involve concerted motions in larger p
228 alysis yields structural improvements at two dihedral angles over prior NMR predictions with differen
230 This conclusion arises from considering the dihedral angle patterns within hexamers belonging to nat
231 ic parameters were utilized to determine the dihedral angles phi and psi between the interacting pept
233 al energy surface corresponding to different dihedral angles phi; three yielded energy minima, and tw
237 articles interact via harmonic potential and dihedral angle potential and are subject to a constant a
238 used to translate the H[bond]C[bond]C[bond]H dihedral angle predicted from the (3)J(HH) into an endoc
240 whose value signals the extent to which the dihedral angle propensities differ from typical structur
244 occurs mainly through tilting of the Si-O-Si dihedral angle rather than shortening of the Si-O bond,
245 ank shows that sterically hindered ranges of dihedral angle reduce the possible chi(2,1) to one or tw
246 ared to the rapid fluctuations of individual dihedral angles, reflecting the collective nature and la
248 r modeling based on NMR-derived distance and dihedral angle restraints and molecular dynamics calcula
249 lear distance and 476 (238 per VEGF monomer) dihedral angle restraints derived from NMR data obtained
250 mics calculations restrained by distance and dihedral angle restraints obtained from NMR spectroscopy
251 collagen model peptides provide distance and dihedral angle restraints that allow determination of mo
252 d in combination with (1)H-(1)H distance and dihedral angle restraints to determine the protein backb
256 particular, a more acute O(oxo)-Mo-S(Cys)-C dihedral angle results in increased cysteine thiolate S
257 ecture combined with thermal fluctuations of dihedral angles results in large variations of local ele
261 ns indicate that intrachain interactions and dihedral angle rotation correlate with the presence of i
262 recaptured to a large measure using backbone dihedral angle sampling that includes nearest neighbor e
263 ses as a function of the varphi,psi-backbone dihedral angles show that the expected value deviates by
264 e most populated conformers exhibit backbone dihedral angles similar to those of a PPII geometry.
265 that accounts for (i) pseudo-dihedral and/or dihedral angle similarity, (ii) nucleotide sequence simi
266 (3)J(CC) and (3)J(CN) couplings to occur for dihedral angles slightly smaller than 180 degrees, parti
267 ation enhancement (PRE) distance restraints, dihedral angle, small-angle X-ray scattering, residual d
268 Configurational entropies determined in dihedral angle space for each amino acid type are accura
269 ackbone torsional mobility in the varphi-psi dihedral angle space, we used a model intrinsically diso
271 , no correlations are found between backbone dihedral angles that are separated by more than one tors
272 rare cases, they involve sequentially remote dihedral angles that form sparse clusters, suggesting a
273 eries of biaryl cation radicals with varying dihedral angles that the hole stabilization shows two di
274 oupling constants both as a function of PYCH dihedral angle theta (Y = O, N, C) and lone pair-PYC dih
275 is sequentially added to tune the inter-ring dihedral angle theta between the bipyridine and the aryl
276 bulk significantly increases the inter-ring dihedral angle theta, is attributed to the effects of li
277 along the coordinate of the central ethylene dihedral angle (theta) from the cis Franck-Condon region
278 en and the unpaired electron at C2 shows the dihedral angle to be 6 degrees, unlike the value of 77 d
279 ng the U-O(peroxo) bonds causes the U-O(2)-U dihedral angle to be bent, and it is this inherent bendi
280 aussian bias is applied with driver bond and dihedral angles to optimize the sampling efficiency.
282 d DFT calculations of biaryls with different dihedral angles unequivocally support that a crossover f
283 interactions with the host hardly affect the dihedral angles, validating that the host is an ideal me
284 f XAO, where, for each residue, the backbone dihedral angle varphi was constrained by using the repor
286 he Haasnoot-Altona equation to calculate the dihedral angle (varphi) between the respective vicinal p
287 n folding using the distribution of backbone dihedral angles (varphi,psi) obtained from an experiment
288 orrelated with the ground-state phenyl-vinyl dihedral angle, varphi, planar styrenes having barriers
290 cis-chelating phosphine ligands (41 degrees dihedral angle) via a restricted alkyne-terminal startin
291 ino acid solvent-accessible surface area and dihedral angles were combined with the RA and PLB to obt
292 he conditional activities between side-chain dihedral angles were computed using the output of micros
294 r about the nominal C5 axis by an angle phi (dihedral angle) were performed using the B3PW91 function
295 delocalization to hopping occurs at a unique dihedral angle where the electronic coupling (Hab ) is o
296 alization in this core is inhibited by large dihedral angles, which hinders effective pi overlap.
297 iral structures with a broad distribution of dihedral angles, which may be explored as chiral ligands
298 s are consistent with a cos(2) dependence on dihedral angle, with no detectable angle-independent ind
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