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1 ccounting for shared variance due to linkage disequilibrium).
2 le when some of the SNPs are in high linkage disequilibrium.
3 heir effect sizes in the presence of linkage disequilibrium.
4 an anti-histamine agent in the management of disequilibrium.
5 limited dissolution of calcite under extreme disequilibrium.
6 confounding associations as well as linkage disequilibrium.
7 d the thousands of surrogate SNPs in linkage disequilibrium.
8 c loci do not systematically exploit linkage disequilibrium.
9 lele frequencies and a fast decay of linkage disequilibrium.
10 allele combinations co-occur in high linkage disequilibrium.
11 type values across samples, known as linkage disequilibrium.
12 tromeric KIR region and are in tight linkage disequilibrium.
13 and were independent with respect to linkage disequilibrium.
14 iplicity of infection (2.7), and low linkage disequilibrium (500-bp) were observed in Chikhwawa Distr
15 also displays consistent patterns of linkage disequilibrium across African populations and has signal
18 it leads to strong correlations and linkage disequilibrium across very distant sites in the genome.
19 m the Hardy-Weinberg equilibrium and linkage disequilibriums after applying Bonferroni correction.
20 with methods based on the admixture linkage disequilibrium (ALD) is to remove the effect of source L
21 is dependent on many factors (e.g., linkage disequilibrium, allele frequencies, genetic architecture
25 ic, nonparametric, joint linkage and linkage disequilibrium analyses using a microsatellite marker pa
26 This result was supported by transmission disequilibrium analyses using a subset of 541 case famil
28 kage that performs joint linkage and linkage disequilibrium analysis between a marker and a putative
29 In particular, the differences in linkage disequilibrium and allele frequency patterns across ethn
30 enetic estimates of Ne computed from linkage disequilibrium and approximate Bayesian computation were
31 six novel SNPs in PRPF6 were in high linkage disequilibrium and associated with PRPF6 mRNA expression
34 fectionate bonds may contribute to emotional disequilibrium and confer elevated risk for the onset of
35 on, Manhattan plot visualization for linkage disequilibrium and eQTL data, and an ontology search for
36 de Polymorphisms (SNPs) according to linkage disequilibrium and P-value or use all SNPs, handles geno
37 ased on flux assessments from (238)U:(234)Th disequilibrium and sediment traps, we found 2 to 3 times
39 ecause of the uncertainty induced by linkage disequilibrium and the fact that some loci harbor multip
41 sal could be explained by breakup of linkage disequilibrium, and direct selection on wing shape is al
42 ed polymorphism, unusual patterns of linkage disequilibrium, and lower levels of population different
45 mating type; IA(s) values show high linkage disequilibrium as is expected in clonal reproduction.
47 -Gly85-Pro86-Met87) in near-complete linkage disequilibrium at the edge of the peptide-binding groove
48 tion, we also detected long-distance linkage disequilibrium at two underlying loci, GS-OH and GS-ELON
51 e examine various mechanisms that may induce disequilibrium behaviour in modern seep carbonates, and
52 ignal may be delayed due to the geographical disequilibrium between climate and tree populations.
53 eraged differences in the pattern of linkage disequilibrium between diverse populations to fine-map t
54 ging differences in the structure of linkage disequilibrium between diverse populations, and increase
56 networks in an NMD mutant could be linked to disequilibrium between functional and nonsense mRNAs.
57 how hexokinase and mTORC1 cooperate to sense disequilibrium between glucose uptake and utilization an
58 that have no shared markers based on linkage disequilibrium between loci appearing in different datas
59 ce computational burden and to limit linkage disequilibrium between single-nucleotide polymorphisms (
60 lincRNAs, we examined the pattern of linkage disequilibrium between SNPs in the lincRNAs and SNPs tha
61 Restricted recombination may promote linkage disequilibrium between the colour locus and incompatibil
63 rong enough to establish significant linkage disequilibrium between the mitochondrial and nuclear gen
64 iatric PTSD is accompanied by a connectivity disequilibrium between the salience and default-mode net
65 rm a high-resolution genome scan for linkage disequilibrium between unlinked genomic regions in natur
66 ial/ethnic groups creates long-range linkage disequilibrium between variants with different allelic f
68 and detected an approximately 33-kb linkage disequilibrium block (containing the lead SNP rs965513)
69 all six environments and tagged to a linkage disequilibrium block comprising two promising candidate
70 e chromosome 12E signal to a 1.95 Mb linkage disequilibrium block containing only one gene, sel-1 sup
72 itive sites overlapping the rs874040 linkage disequilibrium block in human memory, but not in naive C
74 nd that are also sole members of the linkage disequilibrium block surrounding a PGC-SCZ GWAS hit.
76 tially methylated regions within the linkage disequilibrium blocks of the single nucleotide polymorph
77 e same pH (3.3) and comparable thermodynamic disequilibrium but different equilibrated pressures of C
78 ave low genetic variability and high linkage disequilibrium, but relatively few autozygous segments a
79 o and uses a model that accounts for linkage disequilibrium by explicitly modeling haplotype frequenc
80 e through colonization of habitats in severe disequilibrium by pre-adapted individuals, rather than b
81 ve sweep, characteristic patterns of linkage disequilibrium can arise in the genomic region surroundi
82 from 3 breeds to compare the SNP and linkage disequilibrium characteristics together with the power a
83 these findings indicate the predominance of disequilibrium clumped isotope behaviour in modern cold
84 iate most of the risk, but extensive linkage disequilibrium complicates the localization of independe
85 bit a clear gradient of short--range linkage disequilibrium consistent with a Central Asian domestica
86 trong relation between magma ascent rate and disequilibrium crystallization and exsolution plays a ke
89 e in southern Chad and estimate from linkage-disequilibrium decay that this occurred 4,750-7,200 year
90 ication which, combined with a rapid linkage disequilibrium decay, makes it difficult to perform geno
94 re selected based on the short-range linkage disequilibrium distance, which is inherent with long bre
95 rring hard selective sweeps based on linkage disequilibrium distortions under different conditions, i
96 Two patients had a rapid progression with disequilibrium, dysarthria, dysphagia, and central hypov
97 mple lag hypotheses have become prominent in disequilibrium ecology, proposing that communities track
98 functional annotations and allow for linkage disequilibrium estimated from reference genotype data.
99 global array of ocean-atmosphere radiocarbon disequilibrium estimates to demonstrate a approximately
100 eristics such as allele frequencies, linkage disequilibrium etc., is an integral component of many st
101 ed 3 common genetic variants in high linkage disequilibrium for severe pre-treatment pain, representi
102 We used two methods (patterns of linkage disequilibrium from whole-genome SNPs and MSMC estimates
103 because it prevents the breakdown of linkage disequilibrium generated by migration; the selective adv
104 and colouration, such as fine-scale linkage disequilibrium, genomic rearrangements and pleiotropy, t
106 gulatory variants in regions of high linkage disequilibrium identified by expression quantitative tra
109 he adult heart is particularly vulnerable to disequilibrium in homeostasis because its regenerative a
110 sh a link between GSH deficiency and Th1/Th2 disequilibrium in LP-BM5 infection and indicate that I-1
113 We assessed the ability of histones to cause disequilibrium in the redox status and intracellular [Ca
118 1980s, through the hypothesized creation of disequilibrium in water-sediment balance following decou
119 d genetic maps that capture detailed linkage disequilibrium information in European and African Ameri
125 e number of significant SNPs in high linkage disequilibrium (LD) (r(2) > 0.8) with rs3865444 to just
129 Meiotic recombination breaks down linkage disequilibrium (LD) and forms new haplotypes, meaning th
133 We demonstrate that heterogeneity in linkage disequilibrium (LD) between causal variants and SNPs bia
134 stence of moderate to high levels of linkage disequilibrium (LD) between genetic markers and quantita
135 effective population size (Ne) from linkage disequilibrium (LD) between unlinked pairs of genetic ma
136 oaches require information about the linkage disequilibrium (LD) between variants, there has not been
139 et genes and often extend beyond the linkage disequilibrium (LD) blocks containing risk SNPs identifi
141 across multiple individuals based on linkage disequilibrium (LD) can facilitate the analysis of low t
142 -wide association studies (GWAS) and linkage disequilibrium (LD) data from a reference sample with in
145 ublicly available GWAS associations, linkage disequilibrium (LD) measures, functional genomic and var
146 ion size (Ne) can be estimated using linkage disequilibrium (LD) observed across pairs of loci presum
147 sed an algorithm that considers both linkage disequilibrium (LD) patterns and familial transmission i
148 ene statistics are constructed using linkage disequilibrium (LD) patterns from a relevant reference p
149 ethnic comparison revealed different linkage disequilibrium (LD) patterns in HLA-DOA and HLA-DRB1, ex
150 ence requires leveraging the complex linkage disequilibrium (LD) patterns in the cohort to compensate
151 GWAS signals to gene-dense and high linkage disequilibrium (LD) regions, and correlations of gene si
153 tations (e.g., exon or 5'UTR), total linkage disequilibrium (LD) scores and heterozygosity to constru
155 Based on statistical evidence and linkage disequilibrium (LD) structure, we have curated and narro
156 mapping resolution due to extensive linkage disequilibrium (LD) that is characteristic of crosses am
158 association studies, are usually in linkage disequilibrium (LD) with each other within a small genom
160 ants that represent or are in strong linkage disequilibrium (LD) with previously-identified signals a
161 dditional SNP, IL17RA rs41433045, in linkage disequilibrium (LD) with rs41396547, was associated with
163 genetic information sources, namely, linkage disequilibrium (LD), co-segregation (CS) and pedigree re
164 markers, often by pruning markers in Linkage Disequilibrium (LD), ignoring the information contained
165 ssociation studies that benefit from linkage disequilibrium (LD), the main challenge in identifying c
166 genome-wide variants to account for linkage disequilibrium (LD), thus prioritizing associations base
167 dividual-based, population-based and linkage disequilibrium (LD)-aware methods with stringent quality
168 ge sequencing has been combined with linkage-disequilibrium (LD)-based genotype refinement to accurat
169 for calculating risk scores involves linkage disequilibrium (LD)-based marker pruning and applying a
171 d on SNP prior information including linkage disequilibrium (LD)-weighted genic annotation scores, to
182 at rs744373 itself or a variation in linkage disequilibrium may provide a neurogenetic mechanism for
184 ference in adMixed Populations using Linkage Disequilibrium method (LAMP-LD) and evaluated the associ
185 structed and combined with locus ordering by disequilibrium methodology to generate an integrated gen
186 Non-parametric-linkage analysis, linkage-disequilibrium-model analysis, single-SNP analysis, clus
187 L1; the latter is a region with high linkage disequilibrium) nearest to these SNPs has previously bee
188 lation genetic variation, background linkage disequilibrium, number of ancestral populations, between
189 1 traits could be linked through the linkage disequilibrium of 115 associated loci and these links re
191 sclerosis (MS) risk, the ubiquitous linkage disequilibrium operating across the genome has stalled e
193 user's dataset, as well as visualize linkage disequilibrium pattern, infer haplotypes and design tagS
195 ssess the extent to which the unique linkage disequilibrium patterns in African Americans can contrib
196 iversity, haplotype distribution and linkage disequilibrium patterns in the G. hirsutum and G. barbad
199 hat basaltic magmas may rise fast enough for disequilibrium processes to play a key role on the ascen
200 entified 44 of these Alu elements in linkage disequilibrium (r(2) > 0.7) with the trait-associated SN
201 First, all known genes in strong linkage disequilibrium (r(2) > 0.8) with the reported single nuc
202 that though these SNPs were in high linkage disequilibrium (r(2) > 0.8), the rare alleles of these S
204 ourteen noncoding variants in strong linkage disequilibrium (r(2) >/= 0.8) with rs4888378 were identi
205 tide polymorphism (SNP) is in strong linkage disequilibrium (r(2) = 0.90, D' = 0.96) with the previou
206 SNP rs8041357, which is in complete linkage disequilibrium (r(2) = 1) with rs11543198, was also asso
208 ngle-nucleotide polymorphism in high linkage disequilibrium (r(2)=0.7) with rs10995, which both could
209 ulation support the view that accounting for disequilibrium range dynamics will be essential for real
222 te set and conducted association and linkage disequilibrium (standardized index of association, IA(s)
223 ecreasing over time as niches are filled, or disequilibrium states and progression rules, where richn
224 y affected by selection, calculating linkage disequilibrium statistics, performing haplotype reconstr
225 tes of nucleotide diversity metrics, linkage disequilibrium statistics, recombination rates, a batter
226 oach properly takes into account the linkage-disequilibrium structure among variants, and its time co
228 llele frequency, effect size and the linkage disequilibrium structure of credible set variants with t
229 We further show that the strong linkage disequilibrium structure within the human MHC that typic
232 and was not exclusively a result of linkage disequilibrium, suggesting that multiple HLA epitopes ma
233 o cerebellar ataxia, mental retardation, and disequilibrium syndrome 2, cause severe congenital hydro
234 3 single-nucleotide polymorphisms in linkage disequilibrium: T/A at -663, T/C at -470, and C/T at -34
236 developed a RV extension of the generalized disequilibrium test (GDT) to analyze sequence data obtai
237 these, based on significance in the sibship disequilibrium test (P<0.05) or protein-altering propert
238 sed to construct a rare-variant transmission disequilibrium test (rvTDT) in the case-parent data.
240 t-child trio data, by using the transmission disequilibrium test (TDT), which is robust to population
241 l approach called the polygenic transmission disequilibrium test and data from 6,454 families with a
242 sion in NSOFC cases through the transmission disequilibrium test and through analyses of the family-b
243 statistical significance in the transmission-disequilibrium test in the full cohort (rs112439957: P =
246 c HLA alleles identified two in high linkage disequilibrium that are associated with fIIP (DRB1*15:01
247 abundance in the plume signals thermodynamic disequilibrium that favors the formation of methane from
249 selection, haplotype frequencies and linkage disequilibrium to estimate the effects of both selection
250 A GWAS risk loci, and adjustment for linkage disequilibrium to propose target genes of immune cell en
251 sing rapidly and drastically reduced linkage disequilibrium to very low levels even at short map dist
257 uring mature mRNA levels and in high linkage disequilibrium with 65 lead type 2 diabetes GWAS SNPs, w
258 usly screen 2,756 variants in strong linkage disequilibrium with 75 sentinel variants associated with
260 associates with two polymorphisms in linkage disequilibrium with a known IBD susceptibility variant.
261 sion of HLA-A RNA in vivo, in strong linkage disequilibrium with an HLA-A allele that confers *02:01
262 ariant, rs11556924, is not in strong linkage disequilibrium with any other variant and introduces a c
267 e-nucleotide polymorphisms in strong linkage disequilibrium with causative polymorphisms that can be
268 These polymorphisms were in high linkage disequilibrium with each other (r(2) = 0.96) meaning tha
269 analyses identified multiple SNPs in linkage disequilibrium with each other that were significantly a
270 rCa-risk SNPs, including all SNPs in linkage disequilibrium with each risk SNP, resulting in 100 uniq
271 polymorphism rs1295686 (in complete linkage disequilibrium with functional variant rs20541) is assoc
272 equence a small number of regions in linkage disequilibrium with heading date QTL in thousands of sam
275 relevant candidate loci that are in linkage disequilibrium with MICA*008 i.e. HLA-B*08:01, rs3131619
276 s identified, two thirds were not in linkage disequilibrium with nearby SNPs, implicating these varia
277 IL23R, PTGER4, and SNX20 (in strong linkage disequilibrium with NOD2) for CD; and KCNQ2 (near TNFRSF
278 xcept the more than 100 GMAS SNVs in linkage disequilibrium with polymorphisms reported by genome-wid
280 HI, but only rs12243326 is in strong linkage disequilibrium with rs12255372 in our Hispanic populatio
282 intron 8 of the gene, is in complete linkage disequilibrium with rs17026688 and is predicted to affec
284 m in the ADCY9 gene, the majority in linkage disequilibrium with rs1967309, were associated with the
285 tter residual cognition is in strong linkage disequilibrium with rs1990622A (r2 = 0.66), a previously
288 f single-nucleotide polymorphisms in linkage disequilibrium with rs61183828 was located close to two
289 variant-tagging SNP (rs117026326; in linkage disequilibrium with rs73366469), whose minor allele is c
290 olymorphism (SNP) rs2235749 (in high linkage disequilibrium with rs910080) modifies striatal PDYN exp
292 rait-associated SNPs to be in strong linkage disequilibrium with SVs and demonstrate that our panel f
293 thic and soil environments at profound redox disequilibrium with the atmosphere, such as biological s
294 t RNA splicing, but it was in strong linkage disequilibrium with the G allele of the promoter polymor
296 R = 1.63), which is in near complete linkage disequilibrium with the HLA-DRB1*07:01 allele we previou
297 e trait locus (cis-eQTL) variants in linkage disequilibrium with the index variant in 29 of the 41 PD
298 long-range meQTL was found to be in linkage disequilibrium with the most replicated locus of multipl
299 de polymorphism rs6800541 is in high linkage disequilibrium with the nonsynonymous variant in SCN10A,
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