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1 late and one fewer carboxylate ligand to the divalent metal ion.
2 ow if these effects themselves depend on the divalent metal ion.
3 reaction using a catalytic nucleobase and a divalent metal ion.
4 ectron and a solvent-separated monovalent or divalent metal ion.
5 into insoluble spherical nanoparticles with divalent metal ions.
6 e activity as well as a reduced affinity for divalent metal ions.
7 ivity of aqueous silver nanoparticles toward divalent metal ions.
8 led on a membrane surface in the presence of divalent metal ions.
9 ities and high selectivity compared to other divalent metal ions.
10 a catalyst without explicit participation by divalent metal ions.
11 ions, owing to increased charge transfer to divalent metal ions.
12 catalytic activity is strongly stimulated by divalent metal ions.
13 iates resistance to toxic levels of selected divalent metal ions.
14 even side chains for the coordination of two divalent metal ions.
15 ans and responsible for transport of various divalent metal ions.
16 e terminal carboxylates of each subunit with divalent metal ions.
17 Both sites can bind monovalent and divalent metal ions.
18 three acidic amino acids that coordinate two divalent metal ions.
19 l formation within 30 min in the presence of divalent metal ions.
20 s less than that observed in the presence of divalent metal ions.
21 uble-stranded DNA and RNA in the presence of divalent metal ions.
22 has been examined in the presence of various divalent metal ions.
23 a compact conformation in the absence of any divalent metal ions.
24 e N-hydroxyimide with two closely positioned divalent metal ions.
25 a single oxygen atom bridges between the two divalent metal ions.
26 Both enzyme-catalyzed reactions require divalent metal ions.
27 hymena group I ribozyme in monovalent and in divalent metal ions.
28 vage of a 12 nt RNA target in the absence of divalent metal ions.
29 on how isoforms other than syt I respond to divalent metal ions.
30 r Mg2+, Mn2+, Co2+ or a combination of these divalent metal ions.
31 on negative supercoiling and the presence of divalent metal ions.
32 designing fluorescent sensors or probes for divalent metal ions.
33 roposal that the active site coordinates two divalent metal ions.
34 most effectively achieved in the presence of divalent metal ions.
35 eriophages fd and M13 induced by a number of divalent metal ions.
36 e ribozyme can fold and cleave without using divalent metal ions.
37 by a cytosine side chain and involvement of divalent metal ions.
38 d in the presence of Cu(II) but not by other divalent metal ions.
39 reaction without catalytic participation of divalent metal ions.
40 he scissile phosphate diester on active site divalent metal ions.
41 ssile phosphate diester to contact catalytic divalent metal ions.
42 denatured form of DNA and in the presence of divalent metal ions.
43 cal conformation of conRl-B is stabilized by divalent metal ions.
44 ly with the tRNA structure and with specific divalent metal ions.
45 used as colorimetric sensors for a series of divalent metal ions.
46 associated noncovalently in the presence of divalent metal ions.
47 MOSCs), are constructed from the assembly of divalent metal ions, 1,4-benzenedicarboxylate (BDC) link
48 /- 0.1 x 10(6) M(-1).s(-1) in the absence of divalent metal ions, 14.7 +/- 2.2 s(-1) and 25.1 +/- 7.4
49 in the active site required the presence of divalent metal ions, a free 5'-flap (if present), a Wats
50 iously been developed to assess transport of divalent metal ions across the small-intestinal brush bo
51 HNH nuclease domain, and identifying how the divalent metal ions affect the HNH domain conformational
52 change that leads to a decrease in the local divalent metal ion affinity and release of a catalytic m
54 (Kd approximately 960 nm) in the absence of divalent metal ions allowed the free energy for the cont
56 1 is observed to directly chelate a hydrated divalent metal ion and Arg124, on the putative substrate
59 t, is formed by the spatial convergence of a divalent metal ion and two conserved sequence motifs tha
60 ive at near neutral pH, and that it requires divalent metal ions and an intact Nudix motif for enzyma
61 n" is highly selective for zinc versus other divalent metal ions and is relatively pH-insensitive wit
62 Thus, a consistent picture emerges in which divalent metal ions and RNA functional groups are intima
63 ombinant hTPSTs are active in the absence of divalent metal ions and that optimal activity is at pH 6
64 zyme activity was observed in the absence of divalent metal ions and the presence of high concentrati
66 ET requires an appropriate 12/23 RSS pair, a divalent metal ion, and high-mobility-group protein HMGB
67 pH 7.0 and 25 degrees C in the absence of a divalent metal ion, and it is 40 in the presence of 1 mM
68 in vitro only in the presence of appropriate divalent metal ions, and repression of IRP6 by DtxR in a
69 also exhibits high selectivity against other divalent metal ions, and the application of the sensor f
73 nomeric I-SceI indicate that three catalytic divalent metal ions are distributed across a pair of ove
76 ents with noncognate sequences indicate that divalent metal ions are not important to nonspecific DNA
87 hrough simultaneous binding of more than one divalent metal ion at intermediate Mn2+ and Co2+ concent
88 ta reveal two major groove binding sites for divalent metal ions at the EBS1-dIBS1 helix, and surface
89 392S/C394S, and C392H/C394H could bind other divalent metal ions at the transmembrane site and retain
90 assay-the inability to examine the effect of divalent metal ions (at high concentrations) on MIPS act
92 It also shows some kinetic differences in divalent metal ion binding as well as structural variati
94 on the amide chemical shifts, implying that divalent metal ion binding is important for stabilizing
95 imetry, we directly quantified the effect of divalent metal ion binding on the mechanical unfolding f
96 romonas proteolytica (AAP), and the observed divalent metal ion binding properties are discussed with
99 hepatitis delta virus (HDV) ribozyme show a divalent metal ion bound in the active site that is rele
102 NucA inhibition by NuiA involves an unusual divalent metal ion bridge that connects the nuclease wit
103 show an active site containing two adjacent divalent metal ions bridged by a water molecule or hydro
104 cleavage by RNase H requires the presence of divalent metal ions, but the role of metal ions in the m
105 rate revealed bidentate interaction with the divalent metal ion by C1-carboxyl and C2-carbonyl oxygen
106 e propose the following model for the use of divalent metal ions by human type II topoisomerases.
107 than in monovalent cations, and a variety of divalent metal ions can act as catalysts in supporting t
108 by themselves but in the presence of various divalent metal ions can significantly reduce the total p
109 Synthetic supercontainers constructed from divalent metal ions, carboxylate linkers, and sulfonylca
112 including the scissile phosphate bound by a divalent metal ion cofactor (Cd(2)(+)) that supports DNA
113 The catalytic and structural properties of divalent metal ion cofactor binding sites in the dapE-en
114 ut not all of these deoxyribozymes require a divalent metal ion cofactor such as Mg2+ to catalyze att
115 rmore, taking advantage of its dependence on divalent metal ion cofactors, we were able to freeze tra
117 ption is driven by the cooperative effect of divalent metal ion condensation along polynucleotides an
120 ses, telomerase is believed to use a pair of divalent metal ions (coordinated by a triad of aspartic
121 ded cupped structure, with the potential for divalent metal ion coordination at 5'-OH, 8'-OH, and the
124 regulation of the citM gene, which encodes a divalent metal ion-coupled citrate transporter, was show
125 s) DNA molecules in the absence of proteins, divalent metal ions, crowding agents, or free DNA ends.
126 global fold is preserved and suggests that a divalent metal ion crucial to catalysis is destabilized
128 -1,7-dioate aldolase (HpcH), a member of the divalent metal ion dependent class II aldolase enzymes t
130 hat is often within approximately 10-fold of divalent metal ion-dependent activity, these results sug
132 te of the reaction is limited in part by the divalent metal ion-dependent assembly of a complex betwe
133 P), the ribonucleoprotein that catalyzes the divalent metal ion-dependent maturation of the 5' end of
136 ions and the presence of other monovalent or divalent metal ions do not affect its detection ability.
137 nt beta-elimination step, all catalyzed by a divalent metal ion (e.g., Fe(2+) or Co(2+)) and two gene
139 tudies permit direct comparison of different divalent metal-ion effects (Mg(2+), Mn(2+), Co(2+)) on m
140 nd enzyme activity was found among mono- and divalent metal ions except Pb(2+); higher charge density
141 rease sensitivity to paraquat, sodium azide, divalent metal ions (Fe(II) or Cu(II)), or etoposide com
144 ependent isocitrate dehydrogenase requires a divalent metal ion for catalysis, and metal-isocitrate i
146 efine the role of the newly discovered third divalent metal ion for DNA polymerase-catalyzed nucleoti
151 tant of 1.0 mum and a strict requirement for divalent metal ions for consensus (DQNAT) sequon binding
152 is a HNH superfamily endonuclease requiring divalent metal ions for DNA cleavage but not for binding
154 alyte, a peptide, and/or an amino acid and a divalent metal ion (for 16 different monosaccharide isom
155 r cleavage and that a catalytically critical divalent metal ion from the active site is ejected.
159 an organic solid, is highly amenable to host divalent metal ions, i.e., Mg(2+) and Ca(2+), in aqueous
160 with the unique dependence of each phase on divalent metal ion identity and pH, support the hypothes
163 een known that the type II enzyme requires a divalent metal ion in order to cleave DNA, the role of t
164 ucture also reveals a binding pocket for the divalent metal ion in the active site and a binding site
167 e, contributes to the proper coordination of divalent metal ion in the presence of isocitrate, and ma
168 C8) is catalytically active with a number of divalent metal ions in a 1:1 stoichiometry with the foll
169 and catalytic triplex jointly coordinate two divalent metal ions in a configuration that is consisten
170 esence of bestatin revealed that both of the divalent metal ions in AAP are involved in binding besta
172 ypothesis that RNase H can accommodate three divalent metal ions in its catalytic pocket and provide
173 rst direct evidence for the specific role of divalent metal ions in mediating protein-membrane intera
175 osing before chemical reaction requires both divalent metal ions in the active site while opening aft
179 ovalent cations can partially substitute for divalent metal ions in the HDV ribozymes, although a div
182 del is presented for functional roles of two divalent metal ions in the RNase III catalytic mechanism
183 ions that are analogous to those occupied by divalent metal ions in the structures of a number of pal
184 n inhibitor of ribonucleases that employ two divalent metal ions in their catalytic sites--inhibits E
185 ngle-molecule junctions (M=Co, Ni, Cu, or Zn divalent metal ions), in which the current flows perpend
186 ism from the monovalent metal ions and other divalent metal ions; in the presence of latter metal ion
187 dependent on the pK(a) value of the hydrated divalent metal ion included in the reaction, providing e
189 n, we first investigated the effect of eight divalent metal ions, including Ca(2+), Co(2+), Cu(2+), F
190 DFsc stoichiometrically binds a variety of divalent metal ions, including Zn(II), Co(II), Fe(II), a
192 s, it has been proposed that the active site divalent metal ions interact with type II topoisomerases
194 metal ions in the HDV ribozymes, although a divalent metal ion is more effective in supporting catal
195 ty as the Zn-substituted enzyme and thus the divalent metal ion is not required for enzymatic activit
196 178A EcMetAP-I indicate that the active site divalent metal ion is pentacoordinate, identical to the
199 t conformational change in which the role of divalent metal ions is to stabilize the sharply bent DNA
200 ell-defined subsites for the binding of four divalent metal ions (M1--M4) and two phosphates (P1, P2)
201 e correlation spectroscopy (FCS) also reveal divalent metal ion (Me(2+))-induced cluster formation or
203 EC-MALLS) in the presence and absence of the divalent metal ion Mg(2+), which suggests that Spd1 exis
204 n calorimetry studies revealed that a single divalent metal ion (Mg(2+) or Mn(2+)), coordinated by a
206 phosphate (Km = 13 +/- 2 microm) and certain divalent metal ions (Mg(II) Km = 82 +/- 8 microm; Mn(II)
208 e and offers mechanistic insight for how the divalent metal ions modulate catalysis through effects o
209 d the importance of structural and catalytic divalent metal ions observed in the crystal structures.
213 centrations, our results suggest that, among divalent metal ions, only Mg(2+) can directly modulate T
216 d folding into the kinked form is induced by divalent metal ions, or by binding of proteins of the L7
221 ery high resolution of 1.25 A, ten mono- and divalent metal ions per asymmetric unit could be identif
225 with an acid-base catalytic mechanism, and a divalent metal ion plays a role in this reaction probabl
227 pete effectively for association relative to divalent metal ions, presumably because of its lower cha
228 study of how bacteria respond to and obtain divalent metal ions provides insight into the regulation
229 RAD51 DNA strand exchange in the absence of divalent metal ions required for ATP binding and offsets
230 ctions, has evolved to have a more stringent divalent metal ion requirement for high activity as comp
232 its an exceptionally strong affinity for all divalent metal ions resulting in strong [OT + X](2+) pea
234 is highly active at low pH in the absence of divalent metal ions, similar to eukaryotic DNase II.
236 tes: a structural Zn2+ site and a regulatory divalent metal ion site that preferentially binds Fe2+ o
238 R signal can be enhanced and stabilized by a divalent metal ion such as Zn(2+), indicating the format
241 asurements showed that N1-ZntA can bind both divalent metal ions such as Cd(II), Pb(II), and Zn(II) a
244 , Sma0114 has a conserved active site, binds divalent metal ions such as Mg(2+) and Ca(2+) that are r
245 ounterions are required for RNA folding, and divalent metal ions such as Mg(2+) are often critical.
248 vironmental toxin that mimics the effects of divalent metal ions, such as zinc and calcium, in the co
249 t activity of urocanic acid is suppressed by divalent metal ions, suggesting a possible strategy for
251 hepatitis delta virus (HDV) cleave faster in divalent metal ions than in monovalent cations, and a va
252 rmed more stable duplexes in the presence of divalent metal ions than in the absence thereof, but wit
253 with the binding of at least one structural divalent metal ion that does not participate in catalysi
254 ions 9, 12, and 60 are involved with binding divalent metal ions that are important for aminoacylatio
255 deoxyadenosine to be close to one of the two divalent metal ions that are necessary for catalysis.
256 lone-induced DNA cleavage and restricted the divalent metal ions that could support quinolone activit
257 the binding of vardenafil causes loss of the divalent metal ions that have been observed in all the p
258 gest that the outer membrane is a barrier to divalent metal ions that requires a selective channel to
259 purified enzyme can be activated by several divalent metal ions, the exact metal ion used by MetAP i
261 the ratio of 2alpha:1beta:1gamma, requires a divalent metal ion to catalyze the oxidative decarboxyla
266 ions, and the addition of metal chelators or divalent metal ions to the assay mixtures does not affec
267 n, which depend on the ability of juxtaposed divalent metal ions to unpair the end of duplex DNA, may
269 reduction of dietary iron for uptake by the divalent metal ion transport system in the intestine.
273 ated macrophage protein 1), a proton-coupled divalent metal ion transporter, has been identified as a
275 jor iron transporters in the small intestine divalent metal-ion transporter 1 (DMT1) and ferroportin
276 cal membrane of the intestinal enterocyte by divalent metal-ion transporter 1 (DMT1) and is exported
283 mation of tunicamycin complexes with various divalent metal ions was confirmed experimentally by MALD
285 en bonds and coordination to the active site divalent metal ion, whereas the C-terminal domain is com
286 ependent with either Mg(2+) or Mn(2+) as the divalent metal ion, whereas V/K(alpha-Kg) (with Mn(2+))
287 g2+ ion without participation of a catalytic divalent metal ion, while channel 3 involves both struct
288 14 in the catalytic center bind a variety of divalent metal ions with a clear preference for Cu(2+) (
289 , Ni, Zn), reveal distorted square-pyramidal divalent metal ions with four equatorial nitrogen donors
290 ty of MJ0936 had an absolute requirement for divalent metal ions with Ni(2+) and Mn(2+) being most ef
292 ssue, the present study utilized a series of divalent metal ions with varying thiophilicities in conj
295 g RNA transesterification in the presence of divalent metal ions, with activity following the order P
296 aPP can be activated several-fold by various divalent metal ions, with Mn(2+) and Ni(2+) providing th
297 condensation is overcome in the presence of divalent metal ions, with the following order of prefere
298 motif and is fully active in the absence of divalent metal ions, yet is strikingly similar in struct
299 both aztR and aztA expression are induced by divalent metal ions Zn(II), Cd(II), and Pb(II) but not b
300 addition Mg(2+) and is not enhanced by other divalent metal ions (Zn(2+) and Mn(2+)), consistent with
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