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2 tag containing a combination of alternating double-stranded and single-stranded DNA (dsDNA and ssDNA
3 ust uracil DNA glycosylase that only acts on double-stranded and single-stranded uracil-containing DN
4 ple DNA into circular vectors, which contain double-stranded barcodes for computational error correct
5 e a method, termed CypherSeq, which combines double-stranded barcoding error correction and rolling c
6 s enhanced, and the complex was recruited to double-stranded break (DSB) sites in response to etoposi
8 te ICL removal and repair of the ensuing DNA double-stranded break by homology-dependent repair (HDR)
9 structure, thereby hiding telomere ends from double-stranded break repair and ATM signaling, whereas
10 on human chromosome 2, in which synchronized double stranded breaks (DSB) within the echinoderm micro
11 s ATM and DNA-PKcs through the generation of double stranded breaks (DSBs) in murine macrophage genom
12 egulate DNA topology by generating transient double stranded breaks during replication and transcript
13 frequently during healing of induced nuclear double-stranded breaks (DSB) but the resulting nuclear i
14 k radiation showed a significant increase in double-stranded breaks (DSB) in the DNA of parotid saliv
15 -resistant cells regain RAD51 loading to DNA double-stranded breaks (DSBs) and stalled replication fo
16 rly remarkable in the examination of how DNA double-stranded breaks (DSBs) are repaired, with many co
19 emplate-driven repair pathway that mends DNA double-stranded breaks (DSBs), and thus helps to maintai
20 deaminases to introduce changes (rather than double-stranded breaks and donor templates) and offers p
24 evidence of ATR inhibition and enhanced DNA double-stranded breaks in response to the combination.
27 ortion of S/G2-phase cells transduced by the double-stranded but not the single-stranded recombinant
28 tion is required for repairing lesions using double-stranded, but not single-stranded DNA as a templa
31 separate the Watson and Crick strands of the double-stranded chromosomal DNA in a single cell and to
32 t during homologous recombination, repair of double stranded DNA breaks, and integron recombination.
35 robe (single stranded DNA-ssDNA) and hybrid (double stranded DNA-dsDNA) both via 3-NT reduction and g
37 hematosus (SLE), IgE antibodies specific for double-stranded DNA (dsDNA) activated plasmacytoid dendr
38 ently repressed to prevent the generation of double-stranded DNA (dsDNA) breaks in cycling large pre-
39 ing via homology-directed repair (HDR) after double-stranded DNA (dsDNA) cleavage facilitates functio
41 cant correlation between the release of host double-stranded DNA (dsDNA) following rhinovirus infecti
42 Each strain encodes a 9.8- to 9.9-kb linear double-stranded DNA (dsDNA) genome with large inverted t
44 rategies that enable recognition of specific double-stranded DNA (dsDNA) regions has been a longstand
46 onjugate accumulation was dependent upon the double-stranded DNA (dsDNA) sensor cyclic GMP-AMP syntha
47 e can form a nucleoprotein filament (NPF) on double-stranded DNA (dsDNA) that is capable of unwrappin
48 cryo-EM), we show that the binding of target double-stranded DNA (dsDNA) to a type I-F CRISPR system
49 tion releases granule proteins together with double-stranded DNA (dsDNA) to form extracellular fibers
50 ies to prevent active infection with certain double-stranded DNA (dsDNA) viruses after allogeneic hem
54 u magnetic nanoparticles functionalized with double-stranded DNA (dsDNA), a sequence of the breast ca
55 dynamics, the division between the rates of double-stranded DNA (dsDNA), single-stranded RNA (ssRNA)
56 nsible for pairing the ssDNA with homologous double-stranded DNA (dsDNA), which serves as the templat
58 are studied as models for viruses containing double-stranded DNA (polymer) and condensing proteins (p
59 oprotein C1/C2 (hnRNPC1/C2) can also bind to double-stranded DNA and function in trans as a vitamin D
61 dro-2'-deoxyguanine (8-oxoG) often occurs in double-stranded DNA and poses a threat to genomic integr
62 psid shell, must be reverse transcribed into double-stranded DNA and released from the capsid (in a p
64 ting such models have been reported that use double-stranded DNA as donors, but their efficiency is t
65 assembly of head-to-head CMGs that encircle double-stranded DNA at the origin, the two CMGs must pas
66 hermore, our data indicate that the entry of double-stranded DNA beyond a short threshold distance fr
68 al chromatin organization before and after a double-stranded DNA break (DSB), to estimate the level o
73 Unrepaired DNA lesions, such as single- and double-stranded DNA breaks (SSBs and DSBs), and single-s
74 pyogenes (SpCas9) is more active in creating double-stranded DNA breaks at 37 degrees C than at 22 de
78 cycle progression through mitosis following double-stranded DNA breaks leads to the formation of mic
79 antage that it does not require formation of double-stranded DNA breaks or provision of a donor DNA t
80 ed replication forks, insufficient repair of double-stranded DNA breaks, and improper segregation of
81 et (UV)-C radiation and reagents that induce double-stranded DNA breaks, but exhibit normal responses
82 BRCA1 has no equivalent role at chromosomal double-stranded DNA breaks, indicating that tandem dupli
87 n a large set of 438 GQ forming sequences in double-stranded DNA by integrating fluorescence measurem
89 sembly and utilization of a surface-attached double-stranded DNA catenane composed of two intact inte
90 ersion of one base pair into another without double-stranded DNA cleavage, excess stochastic insertio
97 nthetic DNA, through the in vivo excision of double-stranded DNA from an episomal replicon by CRISPR/
98 ination events are associated with repair of double-stranded DNA gaps and/or involve Mlh1-independent
99 illus subtilis phage whose uracil-containing double-stranded DNA genome encodes distant homologs of b
103 enovirus (HAdV), a medium-sized virus with a double-stranded DNA genome, needs to be identified.
104 ruses, which we denote magroviruses, possess double-stranded DNA genomes of 65 to 100 kilobases in si
105 inner cavity, large enough to accommodate a double-stranded DNA helix, as well as a protruding Tower
107 on) to analyze the differential stability of double-stranded DNA in complex with either cisplatin or
111 finely designing the curvature and torsion, double-stranded DNA knots were accessed by hybridizing a
113 tes DNA topology by transiently breaking one double-stranded DNA molecule (cleavage), allowing a seco
114 s (Cas) that utilize RNA to find and cut the double-stranded DNA molecules at specific locations.
115 ombination, in which the repair of breaks in double-stranded DNA molecules is taking place with a hel
116 l plastid (chloroplast) genomes are circular double-stranded DNA molecules, typically between 100 and
119 linear HCR is a hairpin-free system in which double-stranded DNA monomers could dendritically assembl
121 and chromosomal gene conversion with either double-stranded DNA or single-stranded oligonucleotide d
123 action of cauliflower mosaic virus (CaMV), a double-stranded DNA pararetrovirus, with the model plant
124 s for T4, we show how the energetic costs of double-stranded DNA phages scale with the capsid size, r
127 Here, we show that mice deficient in the double-stranded DNA sensor AIM2 are protected from both
128 ize the replication origin (oriC) by binding double-stranded DNA sequences (DnaA-boxes); subsequently
129 PR)-associated 9 (Cas9) endonuclease cleaves double-stranded DNA sequences specified by guide RNA mol
131 es with a CRISPR RNA (crRNA) and cleaves the double-stranded DNA target complementary to the crRNA gu
136 t single-stranded RNA of the viral genome to double-stranded DNA that is then integrated into the DNA
137 genome of HIV-1 is reverse transcribed into double-stranded DNA that ultimately integrates into the
138 unreported conductance states that occur as double-stranded DNA translocates through a 2.4 nm solid-
139 V E2.IMPORTANCE The papillomavirus (PV) is a double-stranded DNA tumor virus infecting cervix, mouth,
140 Human cytomegalovirus (HCMV) is an enveloped double-stranded DNA virus that causes severe disease in
141 Human cytomegalovirus (HCMV) is a large, double-stranded DNA virus that causes significant human
143 acmanvirus is a newly discovered icosahedral double-stranded DNA virus that was isolated from an envi
144 e fever virus (ASFV) is a highly pathogenic, double-stranded DNA virus with a marked tropism for cell
145 dataset to present a global map of abundant, double-stranded DNA viruses complete with genomic and ec
146 and complex genomes make evolution in these double-stranded DNA viruses more efficient than that in
149 simplex virus 1 (HSV-1) and HSV-2 are large, double-stranded DNA viruses that cause lifelong persiste
151 s) are an ancient and heterogeneous group of double-stranded DNA viruses that preferentially infect t
152 e that Epstein-Barr virus and possible other double-stranded DNA viruses use TRIM29 to suppress local
153 ighlight the emergence of previously unknown double-stranded DNA viruses which delineate and extend t
155 ckaging is strongly conserved in the complex double-stranded DNA viruses, including the herpesviruses
159 ity to telomeric DNA substrates comprised of double-stranded DNA with a 3' single-stranded extension.
160 ApoE4 undergoes nuclear translocation, binds double-stranded DNA with high affinity (low nanomolar),
162 ct a single DNA-nanogold conjugate, an 84-bp double-stranded DNA with two 5-nm nanogold particles for
163 plex led to the release of the AuNPs-S2 from double-stranded DNA(dsDNA) and the recovery of the ECL s
164 facilitation of primer strand invasion into double-stranded DNA, and a suppression of non-homologous
165 igher in single-stranded DNA (ssDNA) than in double-stranded DNA, and copying the resulting uracils c
166 ystal structures of cyclic GMP-AMP synthase, double-stranded DNA, and inhibitors within the enzymatic
168 hich preferentially bind the minor groove of double-stranded DNA, inhibit vaccinia virus infection by
169 P-AMP synthase (cGAS), a cytosolic sensor of double-stranded DNA, is activated in autoinflammatory di
170 e analyze smFRET data of structurally rigid, double-stranded DNA-oligonucleotides in aqueous buffer a
171 ulator of interferon genes, a key adaptor in double-stranded DNA-sensing pathway, followed by its rap
180 The latter allows MjAgo to process long double-stranded DNAs, including circular plasmid DNAs an
181 urrent genome-editing technologies introduce double-stranded (ds) DNA breaks at a target locus as the
182 e-stranded (ss) RNAs with cognate homologous double-stranded (ds) DNA in vitro Using magnetic tweezer
185 s were labeled with three distinct monolayer double-stranded (ds) DNA-gold nanoparticles (DNA-AuNPs).
189 ate that turnover of damage-induced nuclear, double-stranded (ds) RNA requires additional phosphoryla
190 n of adenosine (A) to produce inosine (I) in double-stranded (ds) RNA structures, a process known as
193 and Toll-like receptors recognize microbial double-stranded (ds)DNA, dsRNA, and LPS to induce the ex
194 Here, we report that linear DNAs (single and double stranded) engage in a high-efficiency HDR mechani
196 were applied for the screening test for the double stranded HLA-B*58:01 and HLA-B*57:01 genes that a
197 und that XPA binds different single-stranded/double-stranded junction DNA substrates with a common su
198 eishmania Viannia (L.V.) subgenus harbor the double-stranded Leishmania RNA virus 1 (LRV-1), previous
200 closed promoter complex (RPc), where DNA is double stranded, must isomerize into an open promoter co
203 pectroscopy and HPLC on different single and double stranded oligonucleotides containing a cyclobutan
206 into nanocarrier by intercalating inside the double-stranded pH-responsive DNAs on the GNR surface to
207 cond strategy, using magnetic capture of the double-stranded product followed by denaturing, produces
208 ss complex was dependent on RHA binding to a double-stranded region of the primer binding site (PBS)-
209 geting unmethylated sequences generate local double stranded regions resulting to digestion of unmeth
210 rium Bacillus thuringiensis; next-generation double-stranded ribonucleic acid (dsRNA) PIPs have been
211 lasmid for in planta transient expression of double stranded RNA (dsRNA) homologous to the acetylchol
212 propose that bivalent interactions with the double stranded RNA binding domain and the basic region
217 essive steps in mRNA degradation and prevent double-stranded RNA (dsRNA) accumulation, whereas the vi
218 We also tested the effects of injecting double-stranded RNA (dsRNA) against XDH1, XDH2, or both.
219 ions that fully separate the strands of long double-stranded RNA (dsRNA) and allow the released RNAs
221 abundance 22-nucleotide siRNAs produced from double-stranded RNA (dsRNA) by DCL4 and DCL2, respective
224 Topical application of pathogen-specific double-stranded RNA (dsRNA) for virus resistance in plan
227 are positive-sense RNA viruses that generate double-stranded RNA (dsRNA) intermediates during replica
228 tinct Dicer-like (DCL) proteins that process double-stranded RNA (dsRNA) into small-interfering RNAs
230 that the biogenesis of viral siRNAs from IAV double-stranded RNA (dsRNA) precursors in infected cells
231 eviously, our group has shown that noncoding double-stranded RNA (dsRNA) released during wounding is
232 storically been used as a model to study the double-stranded RNA (dsRNA) Reoviridae family, the membe
233 t encode an ExoN, which functions to degrade double-stranded RNA (dsRNA) replication intermediates.
234 only egress, cells were transfected with the double-stranded RNA (dsRNA) targeting an individual ESCR
236 ting the cascade of antiviral responses that double-stranded RNA (dsRNA) triggers in host cells.
239 Invertebrates rely on Dicer to cleave viral double-stranded RNA (dsRNA), and Drosophila Dicer-2 dist
240 nting translational shutdown mediated by the double-stranded RNA (dsRNA)-activated kinase PKR and the
242 Injection of female mosquitoes with either double-stranded RNA (dsRNA)-ALAT1 or dsRNA ALAT2 signifi
243 y, a previously unidentified mutation in the double-stranded RNA (dsRNA)-binding domain (I64T) decrea
244 ble protein I (RIG-I)-like receptors (RLRs), double-stranded RNA (dsRNA)-dependent protein kinase rec
246 In this study, we analyzed how non-coding double-stranded RNA (dsRNAs) act as a DAMP in the skin a
247 kinase PKR was originally characterized as a double-stranded RNA activated enzyme it can be stimulate
248 ory cytokine and type I IFN responses to the double-stranded RNA analogue poly(I:C) are reduced in mo
250 NAs also activate PKR constructs lacking the double-stranded RNA binding domain and bind to a basic r
251 ng at the Q/R site of GRIA2 Furthermore, the double-stranded RNA binding domains of ADAR3 are require
252 non-catalytic factors containing one or more double-stranded RNA binding motif (dsRBM) that play impo
253 we retrace the evolutionary history of plant double-stranded RNA binding proteins (DRBs), a group of
254 factors activated by the detection of viral double-stranded RNA by pattern-recognition receptors (RI
255 cleaved precursor fragments are converted to double-stranded RNA by RNA-dependent RNA polymerase 6 (R
257 the process of reassortment, whereby the 11 double-stranded RNA genome segments are exchanged among
258 e of toll-like receptor 3 and the binding of double-stranded RNA in the pathogenesis of sterile injur
259 ally, pretreatment with toll-like receptor 3/double-stranded RNA ligand inhibitor led to a reduction
260 kness behavior, single-stranded RNA viruses, double-stranded RNA ligands, and IFNs shared pathways in
262 h broadly acting, because it is triggered by double-stranded RNA molecules derived from virtually any
263 enosine deaminases that edit and destabilize double-stranded RNA reducing its immunostimulatory activ
265 a RNA helicase Dhx9, Nlrp9b recognizes short double-stranded RNA stretches and forms inflammasome com
266 mmunity is independent of a 5' triphosphate, double-stranded RNA structure, or the primary sequence o
267 itro for efficient nuclease activity against double-stranded RNA substrates, particularly at lower te
268 gulation of AsFAR expression by injection of double-stranded RNA suppresses ovarian development and f
269 ny Leishmania (Viannia) parasites harbor the double-stranded RNA virus Leishmania RNA virus 1 (LRV1),
270 isolates of L. braziliensis (>25%) contain a double-stranded RNA virus named Leishmaniavirus 1 (LRV1)
271 catalyzed by Adenosine DeAminases acting on double-stranded RNA(dsRNA) (ADAR), occurs predominantly
272 vation with poly(I:C), a synthetic analog of double-stranded RNA, and longitudinally imaged postsynap
273 er-235 phosphorylated NS5A co-localized with double-stranded RNA, consistent with its role in HCV rep
274 ich encodes an innate immune sensor of viral double-stranded RNA, depends on the interferon regulator
279 uding those coding for Dicer, Argonaute, and double-stranded RNA-binding proteins (dsRBP) as well as
280 ough inhibiting eIF-2alpha kinases including double-stranded RNA-dependent protein kinase (PKR), whic
288 Recent new studies demonstrate that spraying double-stranded RNAs (dsRNAs) and small RNAs (sRNAs) tha
291 terize the AlucJHEH gene, three fragments of double-stranded RNAs (dsRNAs) were designed to target di
295 RNA polymerases (RDRs) catalyze synthesis of double-stranded RNAs that can serve to initiate or ampli
297 ene expression from both single-stranded and double-stranded (self-complementary) recombinant AAV2 ve
299 s, methylated cytosines can be found in both double-stranded (symmetric) and single-stranded (asymmet
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