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3 e identified from ants, and detection of 3,5-ds pyrrolizidine 251O in A. grandidieri represents the f
5 CRISPR adaptation by revealing that it is a ds-DNA-binding protein functioning at the quaternary str
9 ctors demonstrated rapid formation of active ds-linear genomes that persisted stably as concatamers o
11 und to depend upon buffer concentration, and ds-DNA length, demonstrating a dependence on the double
15 lexes to areas of the telomere where ss- and ds-DNA are in close proximity, such as the 3'-telomeric
18 icant improvement in SLEDAI score, ANA, anti-ds DNA, complement, and carbon monoxide diffusion lung c
19 thralgia and fever did not relapse, and anti-ds DNA antibody returned to normal during a follow-up pe
20 ng irreversible height change of the arrayed ds[RNA-DNA], as measured by atomic force microscopy, pro
22 te that the bis-NQIM-R probes possess better ds-DNA bisintercalating ability compared to their mono-a
23 e data suggest that the two polymerases bind ds-DNA very differently, but that both bind pt-DNA and s
30 wever, the second enzyme (designated CsGA1ox/ds) performed multiple reactions, including 1beta-oxidat
31 were changed to the ones present in CsGA1ox/ds was unable to convert GA(9) to GA(4), highlighting th
32 Substitution of three amino acids in CsGA1ox/ds, Phe(93), Pro(106), and Ser(202), with those typicall
34 , conferred GA 3-oxidase activity to CsGA1ox/ds and thereby augmented its potential to form bioactive
35 The Drosophila genes fat (ft) and dachsous (ds) encode large atypical cadherins that collaborate to
38 d to improved models for potential-dependent ds-DNA reorientation at electrode surfaces and will faci
40 rences in substrate specificity of desulpho (ds)-Gl SOTs and to understand the reaction mechanism of
41 r knowledge, detection of 5,8-disubstituted (ds) indolizidine iso-217B in T. electrum represents the
43 ion-induced cytidine deaminase initiates DNA ds break formation by deamination of cytosines in S regi
45 lgidus PCNA trimer with double-stranded DNA (ds DNA) using multi-nanosecond classical molecular dynam
46 nce (5'-GCTGGTGG-3') in double-stranded DNA (ds DNA), an event critical to the generation of the 3'-s
47 tor for the presence of double-stranded DNA (ds-DNA) and (2) hybridization response of a secondary si
48 orientation dynamics of double-stranded DNA (ds-DNA) attached to planar glassy carbon electrode (GCE)
50 ion and denaturation of double-stranded DNA (ds-DNA) is opened up to evaluate the hyperthermia perfor
52 (pt-DNA), and blunt-end double-stranded DNA (ds-DNA) show that the binding selectivity pattern is sim
53 The ratio of double-stranded to total DNA (ds/total ratio) in the buccal samples was the only labor
56 and hRap1 are in a complex, its affinity for ds telomeric sequences is 2-fold higher than TRF2 alone
58 ntegrate a discriminative noise analysis for ds and ss DNA topologies into the threshold detection, r
59 expression of this amino acid-modified GA1ox/ds variant in Arabidopsis accelerated plant growth and d
61 /or intrinsic immunity that causes impaired (ds)RNA sensing, reduced IFN induction, and susceptibilit
64 oxidized by [Os(bpy)2(PVP)10Cl](+) in intact ds-DNA to provide catalytic square wave voltammograms (S
65 rom viral uncoating is either converted into ds DNA efficiently or degraded by cellular DNA repair me
67 intricacy of extracellular and intracellular ds-RNA recognition in viral infections of the central ne
68 induced the expression of the intracellular ds-RNA sensor proteins, retinoic acid inducible gene I (
69 pproximately 20-fold less efficient than its ds activity, depending on the oligonucleotide employed.
71 the non-cooperative association constants (K(ds)) to double-stranded DNA to determine K(ds) as a func
72 e the noncooperative association constants K(ds) to double-stranded DNA for gp32 and *I, a truncated
73 K(ds)) to double-stranded DNA to determine K(ds) as a function of salt concentration for gp32 and *I.
75 with BLM A5 and A2, however, CD-BLM mediates ds-DNA cleavage through cooperative binding of a second
78 proportion of duplex nucleic acids in mixed ds/ss nucleic acid solutions, demonstrating significant
79 the reconstituted domains on ss versus mixed ds-ss DNA approximate the activity of intact RAG1 in the
80 an silence gene expression as well as native ds-siRNA, suggesting that boranophosphate-modified ss-si
82 n of the sample solution, containing Ag NPs, ds-DNA of EGFR exon 21 point mutant gene, GEM as a templ
85 approximately 5 d, and sufficient amounts of ds-cDNA can be obtained from single-cell RNA template fo
87 ults in dramatically increased efficiency of ds DNA photocleavage, the most therapeutically valuable
88 as prepared by electrochemical entrapment of ds-DNA and Au nanoparticles in the o-phenylenediamine ne
89 The addition of ds-DNA caused formation of ds-DNA/IDA complex and recovered the RTP signal of Mn-do
90 tion phenotypes suggest that the gradient of ds expression is necessary for correct PCP throughout th
91 4 alkylates residues in the minor groove of ds DNA, cross-linking with the same 5'-d(CG) sequence sp
96 d a buccal sample characteristic, a ratio of ds/total DNA <34%, which distinguished buccal DNA sample
101 ysteine)/Fe3O4 nanoparticles-graphene oxide (ds-DNA/p(L-Cys)/Fe3O4 NPs-GO/CPE) for sensitive detectio
102 and show that it is sufficient to alter PCP, ds expression is permissive or redundant with other PCP
103 gh-resolution crystal structure of the plant ds-Gl SOT AtSOT18 in complex with 3'-phosphoadenosine 5'
104 d discrimination of double-stranded plasmid (ds-Pl) without the need for denaturation of the target p
105 plementary double-strand plasmid to form PNA/ds-Pl triplex structure is the principle of target plasm
108 NAi), double-stranded short interfering RNA (ds-siRNA) inhibits expression from complementary mRNAs.
109 s a cytosolic sensor of double-stranded RNA (ds)RNA including viral byproducts and intermediates.
110 esults in expression of double-stranded RNA (ds-RNA) molecules that trigger innate immune responses t
111 lts with the FTIR analysis of extracted RNA, ds-DNA, ss-cDNA and isolated nuclei, we verified that th
113 (32)P]-hairpin technology harboring a single ds cleavage site reveal a ss:ds ratio of 6.7 +/- 1.2:1 f
114 own that a Rep monomer bound to such a 3'-ss/ds DNA substrate is unable to unwind the DNA and that a
115 "closed" conformation when bound to a 3'-ss/ds DNA, similar to the orientation observed in the compl
118 to a 3'-single-stranded-double-stranded (ss/ds) DNA junction in solution, as well as the relative or
120 pattern similar to that observed with the ss/ds junction, consistent with disruption of the interacti
121 quired to unwind the fork compared to the ss/ds junction, suggesting that binding to the fork leads t
125 oiled plasmid relaxation assay revealed a ss:ds ratio of 2.8:1 for CD-BLM in comparison with 7.3:1 an
126 boring a single ds cleavage site reveal a ss:ds ratio of 6.7 +/- 1.2:1 for CD-BLM and 3.4:1 and 3.1 +
131 ugated single-strand (ss) and double-strand (ds) 20-base oligonucleotides (ONs) immobilized on single
134 here pH-gated light-activated double-strand (ds) DNA cleavage is controlled by variations in electron
136 cing is attributed to a 1:1 double stranded (ds) complex that does not fit and cannot traverse this n
137 t searches for a homologous double stranded (ds) DNA and catalyzes the exchange of complementary base
138 DNA when the target is in a double stranded (ds) form and compare the response to single stranded (ss
139 nistration of the synthetic double stranded (ds) RNA polyinosinic-polycytidylic acid (poly (I:C)) wid
140 as been shown to respond to double stranded (ds) RNA, a replication intermediary for many viruses.
141 examined the involvement of double stranded (ds) RNA-activated protein kinase PKR in tunicamycin-indu
143 ting in upregulation of the double stranded (ds)RNA sensor proteins RIG-I and MDA5, and a release of
144 pyrene [(+/-)-anti-BPDE] to double-stranded (ds) 5'-PO4--ACCCGCGTCCGCGC-3'/5'-GCGCGGGCGCGGGT-3' oligo
145 =50 mM) of KCl, whereas its double-stranded (ds) activity favors 10 mM MgCl(2) and 50 mM KCl or 2 mM
148 f adenosine (A) in RNA with double-stranded (ds) character, leading to the destabilization of RNA dup
149 man tissue predominantly as double-stranded (ds) circular episomes derived from input linear single-s
151 with force while encircling double-stranded (ds) DNA and that in the presence of Mcm10 the CMG melts
155 ting technologies introduce double-stranded (ds) DNA breaks at a target locus as the first step to ge
156 th single-stranded (ss) and double-stranded (ds) DNA damage with the latter thought to be the major s
157 e AID access to transcribed double-stranded (ds) DNA during immunoglobulin light chain and heavy chai
159 n(2+) blocks end-joining of double-stranded (ds) DNA fragments with 3' overhangs mimicking double-str
160 NAs with cognate homologous double-stranded (ds) DNA in vitro Using magnetic tweezers, we measured th
162 e homologous pairing of two double-stranded (ds) DNA molecules in the absence of proteins, divalent m
163 alt hexamine ions condensed double-stranded (ds) DNA oligomers but not their more highly charged dsRN
165 been well characterized on double-stranded (ds) DNA substrates, where the complementary strand provi
166 guided by an RNA to cleave double-stranded (ds) DNA targets near a short sequence termed a protospac
167 (MB) label conjugated to a double-stranded (ds) DNA tethered to gold strongly depend on the charge o
168 to predict the response of double-stranded (ds) DNA to tension is a cornerstone of understanding DNA
171 e in the assembly of linear double-stranded (ds) DNA viruses is that their genome is translocated int
173 mposed of G-rich repetitive double-stranded (ds) DNA with a 3' single-stranded (ss) overhang and asso
175 el for aqueous solutions of double-stranded (ds) DNA with explicit consideration of electrostatic int
176 tudy of the interactions of double-stranded (ds) DNA with the dirhodium carboxylate compounds Rh(2)(O
177 ear antibody [ANA] and anti-double-stranded (ds) DNA), complement C3 and C4, and changes in renal and
189 tween stacked 6-MI bases in double-stranded (ds) DNA; this coupling is reduced in single-stranded (ss
192 is in an ss form, not in a double-stranded (ds) form, ss AAV genomes with BrdU can be readily tracke
194 xidized a 32 base pair (bp) double-stranded (ds) oligonucleotide representing exon 7 of the p53 gene.
195 nce (RNAi) elicited by long double-stranded (ds) or base-paired viral RNA constitutes the major mecha
198 cells can take up exogenous double-stranded (ds) RNA and use it to initiate an RNA silencing response
200 iphosphate containing viral double-stranded (ds) RNA from self-RNA by an incompletely understood mech
201 ortance of short, isolated, double-stranded (ds) RNA helices and calls for a complete understanding o
205 y are the primary agents of double-stranded (ds) RNA processing in prokaryotic and eukaryotic cells.
206 of damage-induced nuclear, double-stranded (ds) RNA requires additional phosphorylation of carboxy-t
207 ) to produce inosine (I) in double-stranded (ds) RNA structures, a process known as A-to-I RNA editin
208 degrading a 5' triphosphate double-stranded (ds) RNA substrate, a typical pathogen-associated molecul
210 gene transcription produced double-stranded (ds) RNA to activate PKR during vaccinia virus (VACV) inf
213 TLR3)-mediated signaling by double-stranded (ds) RNA, which culminates in the activation of the trans
214 of interferon (IFN)-induced double-stranded (ds) RNA-activated protein kinase (PKR) and is an importa
216 e responses and up-regulate double-stranded (ds) RNA-induced innate responses through Toll-like recep
217 interferon (IFN)-inducible double-stranded (ds) RNA-specific adenosine deaminase, downregulates host
220 rprisingly, Cap-0 and 5'ppp double-stranded (ds) RNAs bind to RIG-I with nearly identical Kd values a
221 nce (RNAi) screen of 19,470 double-stranded (ds) RNAs in cultured cells to characterize the function
222 eport that small, noncoding double-stranded (ds) RNAs play a critical role in mediating neuronal diff
224 KR is activated by RNA with double-stranded (ds) structure and subsequently impairs translation throu
225 Ribonuclease III cleaves double-stranded (ds) structures in bacterial RNAs and participates in div
226 sing evidence suggests that double-stranded (ds) T-DNA, converted from T-strands, are potent substrat
231 responses against cytosolic double-stranded (ds)DNA arising from genotoxic stress and pathogen invasi
232 TTP, but not ATP, to unwind double-stranded (ds)DNA as it translocates from 5' to 3' along single-str
233 CMG is a closed ring around double-stranded (ds)DNA at origins yet must transition to single-stranded
234 hermore, only ssDNA and not double-stranded (ds)DNA competitively inhibits the annealing activity, al
235 AID activity on transcribed double-stranded (ds)DNA containing somatic hypermutation or CSR target se
236 bility to recognize foreign double-stranded (ds)DNA of pathogenic origin in the intracellular environ
237 ction enzyme reactions with double-stranded (ds)DNA oligomers confined in relatively large (and flat)
241 ceptors recognize microbial double-stranded (ds)DNA, dsRNA, and LPS to induce the expression of type
244 eeding of CYP3RNA, a 791-nt double-stranded (ds)RNA complementary to CYP51A, CYP51B, and CYP51C, resu
246 ritis, contains a segmented double-stranded (ds)RNA genome that replicates using viral mRNAs as templ
249 which trigger formation of double-stranded (ds)RNA intermediates via DNA-RNA hybrid intermediates to
250 nse to challenge with RV or double-stranded (ds)RNA mimic, Poly Inosinic-polycytidylic acid (Poly I:C
251 study, CXCL-8 regulation by double-stranded (ds)RNA pathways was analyzed in the context of HCV infec
252 itic cells are activated by double-stranded (ds)RNA present in virally infected cells but absent from
254 Recent studies suggest double-stranded (ds)RNA sequestration is a potential mechanism that allow
255 is activated by blunt-ended double-stranded (ds)RNA with or without a 5'-triphosphate (ppp), by singl
256 rotein kinase that binds to double-stranded (ds)RNA, autophosphorylates its kinase domain, and subseq
258 iral nucleic acids, such as double-stranded (ds)RNA--and in turn activate effector functions, includi
259 unctions in tandem with the double-stranded (ds)RNA-binding protein Loquacious (Loqs) to catalyze the
260 It is now apparent that the double-stranded (ds)RNA-dependent protein kinase, PKR, is a regulator of
263 monstrate that ingestion of double-stranded (ds)RNAs supplied in an artificial diet triggers RNA inte
264 faecalis Csn2 protein as a double-stranded (ds-) DNA-binding protein and report its 2.7 A tetrameric
266 (RNase III; EC 3.1.24) is a double-stranded(ds)-RNA-specific endonuclease with key roles in diverse
267 mbled monolayers of a short, double-stranded(ds)[RNA-DNA] chimera enable permanent digital detection
269 c-polycytidylic acid (poly I:C), a synthetic ds-RNA molecule designed to mimic RNA virus infection.
271 gle BLM can lead to ds-DNA cleavage and that ds cleavage can occur using one or two BLM molecules.
273 However, our studies have suggested that ds cleavage occurs by partial intercalation of BLM's bit
274 a-galactosidase dsRNA (dsbetagal; note that "ds" is used as a prefix to indicate the dsRNA derived fr
276 V vs open circuit potential, OCP) caused the ds-DNA to align parallel to the electrode surface, resul
277 tive values (i.e., -0.2 V vs OCP) caused the ds-DNA to reorient perpendicular to the electrode surfac
278 the basis of this finding, we developed the ds-NIF (nucleoside with intrinsic fluorescence)-probe me
280 eling of docking of oxidizing species on the ds-oligonucleotide were consistent with the experimental
283 ntegration of T-DNA molecules occurs through ds intermediates and requires active participation of th
285 le binding modes of a single BLM can lead to ds-DNA cleavage and that ds cleavage can occur using one
286 (D) = 1.3-1.5 x 10(-9) M) and selectively to ds/ss-DNA junctions that carry both a binding site for P
287 turated calomel electrode (SCE), specific to ds-ON and highly sensitive to base pair mismatches, was
293 n the Delta C(p) of binding to pt-DNA versus ds-DNA, and a difference in pI for these two complexes,
294 The affinities of the protein for ss- vs. ds-DNA are comparable, and inversely proportional to sal
297 ethylmmonium chloride), PDDA, decorated with ds-DNA was employed in this study to identify DNA damage
299 ed on a carbon paste electrode modified with ds-DNA/poly(L-cysteine)/Fe3O4 nanoparticles-graphene oxi
300 maximum amount of Cl(2)(*-) is produced with ds (double-stranded) DNA, where the one-electron-oxidize