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1 oligonucleotide and by a consensus cold Sp-1 ds oligonucleotide, indicating specific Sp-1 binding.
4 e identified from ants, and detection of 3,5-ds pyrrolizidine 251O in A. grandidieri represents the f
6 CRISPR adaptation by revealing that it is a ds-DNA-binding protein functioning at the quaternary str
10 ctors demonstrated rapid formation of active ds-linear genomes that persisted stably as concatamers o
12 und to depend upon buffer concentration, and ds-DNA length, demonstrating a dependence on the double
15 le-stranded poly(dG-dC).(dG-dC) (GC-DNA) and ds poly(dA-dT).(dA-dT) (AT-DNA) were observed by atomic
17 rols and the production of high titer ss and ds DNA antibodies of the IgG subclass that are not norma
18 lexes to areas of the telomere where ss- and ds-DNA are in close proximity, such as the 3'-telomeric
21 icant improvement in SLEDAI score, ANA, anti-ds DNA, complement, and carbon monoxide diffusion lung c
22 thralgia and fever did not relapse, and anti-ds DNA antibody returned to normal during a follow-up pe
23 ng irreversible height change of the arrayed ds[RNA-DNA], as measured by atomic force microscopy, pro
25 e data suggest that the two polymerases bind ds-DNA very differently, but that both bind pt-DNA and s
31 The Drosophila genes fat (ft) and dachsous (ds) encode large atypical cadherins that collaborate to
34 d to improved models for potential-dependent ds-DNA reorientation at electrode surfaces and will faci
36 rences in substrate specificity of desulpho (ds)-Gl SOTs and to understand the reaction mechanism of
37 r knowledge, detection of 5,8-disubstituted (ds) indolizidine iso-217B in T. electrum represents the
38 particular type of intermolecular disulfide (ds) bond is formed in the capsid of a cytoplasmically re
39 e in levels of constraint as estimated by dN/ds ratios, with the NGF proregion showing the lowest deg
41 ion-induced cytidine deaminase initiates DNA ds break formation by deamination of cytosines in S regi
43 lgidus PCNA trimer with double-stranded DNA (ds DNA) using multi-nanosecond classical molecular dynam
44 nce (5'-GCTGGTGG-3') in double-stranded DNA (ds DNA), an event critical to the generation of the 3'-s
45 tor for the presence of double-stranded DNA (ds-DNA) and (2) hybridization response of a secondary si
46 orientation dynamics of double-stranded DNA (ds-DNA) attached to planar glassy carbon electrode (GCE)
48 ion and denaturation of double-stranded DNA (ds-DNA) is opened up to evaluate the hyperthermia perfor
50 (pt-DNA), and blunt-end double-stranded DNA (ds-DNA) show that the binding selectivity pattern is sim
51 The ratio of double-stranded to total DNA (ds/total ratio) in the buccal samples was the only labor
54 and hRap1 are in a complex, its affinity for ds telomeric sequences is 2-fold higher than TRF2 alone
57 /or intrinsic immunity that causes impaired (ds)RNA sensing, reduced IFN induction, and susceptibilit
61 oxidized by [Os(bpy)2(PVP)10Cl](+) in intact ds-DNA to provide catalytic square wave voltammograms (S
62 Co(bpy)(3)(3+) binds more strongly to intact ds-DNA, and its SWV peaks at 0.04 V decreased as DNA was
63 rom viral uncoating is either converted into ds DNA efficiently or degraded by cellular DNA repair me
65 intricacy of extracellular and intracellular ds-RNA recognition in viral infections of the central ne
66 induced the expression of the intracellular ds-RNA sensor proteins, retinoic acid inducible gene I (
67 pproximately 20-fold less efficient than its ds activity, depending on the oligonucleotide employed.
69 the non-cooperative association constants (K(ds)) to double-stranded DNA to determine K(ds) as a func
70 e the noncooperative association constants K(ds) to double-stranded DNA for gp32 and *I, a truncated
71 K(ds)) to double-stranded DNA to determine K(ds) as a function of salt concentration for gp32 and *I.
74 with BLM A5 and A2, however, CD-BLM mediates ds-DNA cleavage through cooperative binding of a second
77 proportion of duplex nucleic acids in mixed ds/ss nucleic acid solutions, demonstrating significant
78 the reconstituted domains on ss versus mixed ds-ss DNA approximate the activity of intact RAG1 in the
79 an silence gene expression as well as native ds-siRNA, suggesting that boranophosphate-modified ss-si
83 approximately 5 d, and sufficient amounts of ds-cDNA can be obtained from single-cell RNA template fo
86 ults in dramatically increased efficiency of ds DNA photocleavage, the most therapeutically valuable
87 as prepared by electrochemical entrapment of ds-DNA and Au nanoparticles in the o-phenylenediamine ne
88 The addition of ds-DNA caused formation of ds-DNA/IDA complex and recovered the RTP signal of Mn-do
89 tion phenotypes suggest that the gradient of ds expression is necessary for correct PCP throughout th
90 4 alkylates residues in the minor groove of ds DNA, cross-linking with the same 5'-d(CG) sequence sp
96 d a buccal sample characteristic, a ratio of ds/total DNA <34%, which distinguished buccal DNA sample
102 ysteine)/Fe3O4 nanoparticles-graphene oxide (ds-DNA/p(L-Cys)/Fe3O4 NPs-GO/CPE) for sensitive detectio
103 and show that it is sufficient to alter PCP, ds expression is permissive or redundant with other PCP
104 gh-resolution crystal structure of the plant ds-Gl SOT AtSOT18 in complex with 3'-phosphoadenosine 5'
105 d discrimination of double-stranded plasmid (ds-Pl) without the need for denaturation of the target p
106 plementary double-strand plasmid to form PNA/ds-Pl triplex structure is the principle of target plasm
109 NAi), double-stranded short interfering RNA (ds-siRNA) inhibits expression from complementary mRNAs.
110 s a cytosolic sensor of double-stranded RNA (ds)RNA including viral byproducts and intermediates.
111 esults in expression of double-stranded RNA (ds-RNA) molecules that trigger innate immune responses t
112 lts with the FTIR analysis of extracted RNA, ds-DNA, ss-cDNA and isolated nuclei, we verified that th
114 (32)P]-hairpin technology harboring a single ds cleavage site reveal a ss:ds ratio of 6.7 +/- 1.2:1 f
115 own that a Rep monomer bound to such a 3'-ss/ds DNA substrate is unable to unwind the DNA and that a
116 "closed" conformation when bound to a 3'-ss/ds DNA, similar to the orientation observed in the compl
119 to a 3'-single-stranded-double-stranded (ss/ds) DNA junction in solution, as well as the relative or
121 pattern similar to that observed with the ss/ds junction, consistent with disruption of the interacti
122 quired to unwind the fork compared to the ss/ds junction, suggesting that binding to the fork leads t
125 oiled plasmid relaxation assay revealed a ss:ds ratio of 2.8:1 for CD-BLM in comparison with 7.3:1 an
126 boring a single ds cleavage site reveal a ss:ds ratio of 6.7 +/- 1.2:1 for CD-BLM and 3.4:1 and 3.1 +
131 ugated single-strand (ss) and double-strand (ds) 20-base oligonucleotides (ONs) immobilized on single
134 here pH-gated light-activated double-strand (ds) DNA cleavage is controlled by variations in electron
135 DNG-H) conjugates with 30-mer double-strand (ds) DNA, d(CGCCGCGCGCGCGAAAAACCCGGCGCGCGC)/d(GCGGCGCGCGC
137 t searches for a homologous double stranded (ds) DNA and catalyzes the exchange of complementary base
138 ng single stranded (ss) and double stranded (ds) DNA, and, in addition, develop glomerulonephritis.
139 DNA when the target is in a double stranded (ds) form and compare the response to single stranded (ss
140 as been shown to respond to double stranded (ds) RNA, a replication intermediary for many viruses.
141 examined the involvement of double stranded (ds) RNA-activated protein kinase PKR in tunicamycin-indu
143 styrene oxide reacted with double stranded (ds)-DNA in the same film, mimicking metabolism and DNA d
144 pyrene [(+/-)-anti-BPDE] to double-stranded (ds) 5'-PO4--ACCCGCGTCCGCGC-3'/5'-GCGCGGGCGCGGGT-3' oligo
145 =50 mM) of KCl, whereas its double-stranded (ds) activity favors 10 mM MgCl(2) and 50 mM KCl or 2 mM
148 f adenosine (A) in RNA with double-stranded (ds) character, leading to the destabilization of RNA dup
149 man tissue predominantly as double-stranded (ds) circular episomes derived from input linear single-s
154 ting technologies introduce double-stranded (ds) DNA breaks at a target locus as the first step to ge
155 th single-stranded (ss) and double-stranded (ds) DNA damage with the latter thought to be the major s
156 e AID access to transcribed double-stranded (ds) DNA during immunoglobulin light chain and heavy chai
158 n(2+) blocks end-joining of double-stranded (ds) DNA fragments with 3' overhangs mimicking double-str
159 NAs with cognate homologous double-stranded (ds) DNA in vitro Using magnetic tweezers, we measured th
161 e homologous pairing of two double-stranded (ds) DNA molecules in the absence of proteins, divalent m
162 alt hexamine ions condensed double-stranded (ds) DNA oligomers but not their more highly charged dsRN
163 been well characterized on double-stranded (ds) DNA substrates, where the complementary strand provi
164 (MB) label conjugated to a double-stranded (ds) DNA tethered to gold strongly depend on the charge o
165 to predict the response of double-stranded (ds) DNA to tension is a cornerstone of understanding DNA
168 e in the assembly of linear double-stranded (ds) DNA viruses is that their genome is translocated int
170 mposed of G-rich repetitive double-stranded (ds) DNA with a 3' single-stranded (ss) overhang and asso
171 el for aqueous solutions of double-stranded (ds) DNA with explicit consideration of electrostatic int
172 tudy of the interactions of double-stranded (ds) DNA with the dirhodium carboxylate compounds Rh(2)(O
173 ear antibody [ANA] and anti-double-stranded (ds) DNA), complement C3 and C4, and changes in renal and
185 tween stacked 6-MI bases in double-stranded (ds) DNA; this coupling is reduced in single-stranded (ss
186 fficiency of LX ligation of double-stranded (ds) ends is critically dependent upon the length of the
188 is in an ss form, not in a double-stranded (ds) form, ss AAV genomes with BrdU can be readily tracke
190 nuclear extract to labeled double-stranded (ds) oligonucleotide containing this sequence resulted in
191 xidized a 32 base pair (bp) double-stranded (ds) oligonucleotide representing exon 7 of the p53 gene.
192 nce (RNAi) elicited by long double-stranded (ds) or base-paired viral RNA constitutes the major mecha
196 cells can take up exogenous double-stranded (ds) RNA and use it to initiate an RNA silencing response
199 iphosphate containing viral double-stranded (ds) RNA from self-RNA by an incompletely understood mech
200 ortance of short, isolated, double-stranded (ds) RNA helices and calls for a complete understanding o
204 y are the primary agents of double-stranded (ds) RNA processing in prokaryotic and eukaryotic cells.
205 of damage-induced nuclear, double-stranded (ds) RNA requires additional phosphorylation of carboxy-t
206 ) to produce inosine (I) in double-stranded (ds) RNA structures, a process known as A-to-I RNA editin
207 degrading a 5' triphosphate double-stranded (ds) RNA substrate, a typical pathogen-associated molecul
209 gene transcription produced double-stranded (ds) RNA to activate PKR during vaccinia virus (VACV) inf
213 TLR3)-mediated signaling by double-stranded (ds) RNA, which culminates in the activation of the trans
214 of interferon (IFN)-induced double-stranded (ds) RNA-activated protein kinase (PKR) and is an importa
217 e responses and up-regulate double-stranded (ds) RNA-induced innate responses through Toll-like recep
218 interferon (IFN)-inducible double-stranded (ds) RNA-specific adenosine deaminase, downregulates host
220 rprisingly, Cap-0 and 5'ppp double-stranded (ds) RNAs bind to RIG-I with nearly identical Kd values a
221 nce (RNAi) screen of 19,470 double-stranded (ds) RNAs in cultured cells to characterize the function
222 eport that small, noncoding double-stranded (ds) RNAs play a critical role in mediating neuronal diff
223 to bind specifically to the double-stranded (ds) RSS heptamer, but with both weak specificity and aff
224 KR is activated by RNA with double-stranded (ds) structure and subsequently impairs translation throu
225 Ribonuclease III cleaves double-stranded (ds) structures in bacterial RNAs and participates in div
226 sing evidence suggests that double-stranded (ds) T-DNA, converted from T-strands, are potent substrat
229 TTP, but not ATP, to unwind double-stranded (ds)DNA as it translocates from 5' to 3' along single-str
230 hermore, only ssDNA and not double-stranded (ds)DNA competitively inhibits the annealing activity, al
231 AID activity on transcribed double-stranded (ds)DNA containing somatic hypermutation or CSR target se
232 bility to recognize foreign double-stranded (ds)DNA of pathogenic origin in the intracellular environ
233 ction enzyme reactions with double-stranded (ds)DNA oligomers confined in relatively large (and flat)
238 ceptors recognize microbial double-stranded (ds)DNA, dsRNA, and LPS to induce the expression of type
242 eeding of CYP3RNA, a 791-nt double-stranded (ds)RNA complementary to CYP51A, CYP51B, and CYP51C, resu
244 ritis, contains a segmented double-stranded (ds)RNA genome that replicates using viral mRNAs as templ
248 study, CXCL-8 regulation by double-stranded (ds)RNA pathways was analyzed in the context of HCV infec
249 itic cells are activated by double-stranded (ds)RNA present in virally infected cells but absent from
251 Recent studies suggest double-stranded (ds)RNA sequestration is a potential mechanism that allow
252 is activated by blunt-ended double-stranded (ds)RNA with or without a 5'-triphosphate (ppp), by singl
253 rotein kinase that binds to double-stranded (ds)RNA, autophosphorylates its kinase domain, and subseq
255 iral nucleic acids, such as double-stranded (ds)RNA--and in turn activate effector functions, includi
256 unctions in tandem with the double-stranded (ds)RNA-binding protein Loquacious (Loqs) to catalyze the
257 It is now apparent that the double-stranded (ds)RNA-dependent protein kinase, PKR, is a regulator of
259 monstrate that ingestion of double-stranded (ds)RNAs supplied in an artificial diet triggers RNA inte
260 faecalis Csn2 protein as a double-stranded (ds-) DNA-binding protein and report its 2.7 A tetrameric
261 (RNase III; EC 3.1.24) is a double-stranded(ds)-RNA-specific endonuclease with key roles in diverse
262 mbled monolayers of a short, double-stranded(ds)[RNA-DNA] chimera enable permanent digital detection
264 c-polycytidylic acid (poly I:C), a synthetic ds-RNA molecule designed to mimic RNA virus infection.
266 gle BLM can lead to ds-DNA cleavage and that ds cleavage can occur using one or two BLM molecules.
268 However, our studies have suggested that ds cleavage occurs by partial intercalation of BLM's bit
269 a-galactosidase dsRNA (dsbetagal; note that "ds" is used as a prefix to indicate the dsRNA derived fr
272 V vs open circuit potential, OCP) caused the ds-DNA to align parallel to the electrode surface, resul
273 tive values (i.e., -0.2 V vs OCP) caused the ds-DNA to reorient perpendicular to the electrode surfac
274 the basis of this finding, we developed the ds-NIF (nucleoside with intrinsic fluorescence)-probe me
277 eling of docking of oxidizing species on the ds-oligonucleotide were consistent with the experimental
281 terminus of micro 1, was shown to form this ds bond with the Cys679 residue from another micro 1 sub
282 ntegration of T-DNA molecules occurs through ds intermediates and requires active participation of th
284 le binding modes of a single BLM can lead to ds-DNA cleavage and that ds cleavage can occur using one
285 (D) = 1.3-1.5 x 10(-9) M) and selectively to ds/ss-DNA junctions that carry both a binding site for P
286 turated calomel electrode (SCE), specific to ds-ON and highly sensitive to base pair mismatches, was
290 hift which was inhibited by excess unlabeled ds oligonucleotide and by a consensus cold Sp-1 ds oligo
293 n the Delta C(p) of binding to pt-DNA versus ds-DNA, and a difference in pI for these two complexes,
294 The affinities of the protein for ss- vs. ds-DNA are comparable, and inversely proportional to sal
297 ethylmmonium chloride), PDDA, decorated with ds-DNA was employed in this study to identify DNA damage
299 ed on a carbon paste electrode modified with ds-DNA/poly(L-cysteine)/Fe3O4 nanoparticles-graphene oxi
300 maximum amount of Cl(2)(*-) is produced with ds (double-stranded) DNA, where the one-electron-oxidize
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